RANBP1 Localizes a Subset of Mitotic Regulatory Factors on Spindle Microtubules and Regulates Chromosome Segregation in Human Cells

Total Page:16

File Type:pdf, Size:1020Kb

RANBP1 Localizes a Subset of Mitotic Regulatory Factors on Spindle Microtubules and Regulates Chromosome Segregation in Human Cells 3748 Research Article RANBP1 localizes a subset of mitotic regulatory factors on spindle microtubules and regulates chromosome segregation in human cells Antonio Tedeschi*, Marilena Ciciarello, Rosamaria Mangiacasale, Emanuele Roscioli, Wilhelmina M. Rensen and Patrizia Lavia‡ IBPM Institute of Molecular Biology and Pathology, CNR National Research Council, Via degli Apuli 4, 00185 Rome, Italy *Present address: Research Institute of Molecular Pathology (IMP), Dr Bohr-Gasse 7, A-1030 Vienna, Austria ‡Author for correspondence (e-mail: [email protected]) Accepted 28 August 2007 Journal of Cell Science 120, 3748-3761 Published by The Company of Biologists 2007 doi:10.1242/jcs.009308 Summary The GTPase RAN has an established role in spindle cells frequently showed lagging chromosomes in anaphase, assembly and in mitotic progression, although not all suggesting that merotelic attachments form and are not mechanisms are fully understood in somatic cells. Here, we efficiently resolved. These data indicate that RANBP1 have downregulated RAN-binding protein 1 (RANBP1), a activity is required for the proper localization of specific RAN partner that has highest abundance in G2 and factors that regulate microtubule function; loss of this mitosis, in human cells. RANBP1-depleted cells underwent activity contributes to the generation of aneuploidy in a prolonged prometaphase delay often followed by apoptosis. microtubule-dependent manner. Cells that remained viable assembled morphologically normal spindles; these spindles, however, were hyperstable Supplementary material available online at and failed to recruit cyclin B1 or to restrict the localization http://jcs.biologists.org/cgi/content/full/120/21/3748/DC1 of HURP (DLG7), a microtubule-stabilizing factor, to plus- ends. RANBP1 depletion did not increase the frequency of Key words: RANBP1, GTPase RAN, Mitosis, Spindle microtubules, unattached chromosomes; however, RANBP1-depleted HURP, Cyclin B1 Journal of Cell Science Introduction spindle assembly is driven by chromatin and requires RAN- The GTPase RAN is a well-known regulator of nucleo- GTP. Seminal studies showed that RAN-GTP regulates mitosis cytoplasmic transport across the nuclear envelope (NE) in essentially by acting on classical import complexes containing interphase, of spindle organization after NE breakdown, and of mitotic factors that harbour a nuclear localization sequence nuclear and NE reconstitution at mitotic exit (reviewed by (NLS), an importin ␣ member interacting with the NLS and Weis, 2003). Although diverse, these functions rely on one importin ␤, the import vector in interphase (Carazo-Salas et al., basic conserved mechanism: the ability of GTP-bound RAN to 1999; Kalab et al., 1999). RAN-GTP binds importin ␤ with interact with its effectors. RAN effectors essentially belong to high affinity and causes the release of free NLS factors that can the family of transport vectors [e.g. importin ␤ and exportin then productively regulate mitotic processes. RAN-GTP is (CRM1, XPO1)] and after NE breakdown are functionally generated by chromatin-bound RCC1 and is hydrolyzed away ‘recycled’ from their role as transport vectors to act as mitotic from chromatin: therefore, free NLS-containing mitotic factors regulators. are prevalently released in the proximity of chromatin. This is The nucleotide-bound state of RAN is regulated by the consistent with the mechanism of chromatin-driven spindle nucleotide exchange factor RCC1, which generates GTP- assembly. These data support the idea that a ‘gradient’ of RAN- bound RAN (RAN-GTP), and by RANGAP1, which catalyzes GTP that concentrates at chromosomes, and dilutes away from GTP hydrolysis on RAN. RAN-binding protein 1 (RANBP1) them, regulates spindle formation and function in the Xenopus is a non-catalytic partner that regulates nucleotide turnover on model (Caudron et al., 2005). RAN by modulating the activity of RAN catalytic factors: it Despite the conservation of the basic mechanisms in the stimulates hydrolysis by RANGAP1 and inhibits RCC1 RAN network, we do not fully understand how RAN operates activity, at least in vitro (Bischoff et al., 1995). Physiological to regulate mitosis after spindle assembly in mammalian cells. roles of RANBP1 are probably more complex, because The gradient model explains long-range effects, but does not RANBP1 is found in complexes with RAN and transport seem to explain the diversity and specificity of events that are factors (Plafker and Macara, 2002), and it contributes to influenced by RAN, namely aster organization, spindle pole modulate the assembly and disassembly of these complexes formation and microtubules (MTs)/kinetochores (KTs) (Chi et al., 1996; Kehlenbach et al., 1999). interactions (reviewed by Arnaoutov and Dasso, 2005; Mitotic roles of RAN, its regulators and effectors were Ciciarello et al., 2007). Modelling studies actually indicate originally identified in Xenopus egg-derived systems, in which that the size constraints of somatic cells would limit the RANBP1 depletion and mitosis 3749 efficacy of the gradient (Gorlich et al., 2003; Kalab et al., Results 2006). Rather, increasing evidence from somatic cells RANBP1 downregulation increases RAN-GTP levels, suggests that local assemblies of RAN regulators and effectors induces apoptosis and reduces the mitotic index ‘embedded’ within the overall RAN gradient produce subtle To investigate the requirement for RANBP1 activity in human signals at centrosomes, MTs and KTs. These signals can cells, we downregulated RANBP1 protein levels by RNAi. generate local discontinuity in the gradient at crucial mitotic Asynchronously cycling U20S osteosarcoma cells were sites. Furthermore, an increasing number of mitotic regulators, transfected with RANBP1-specific small interfering (si) RNA including non-NLS factors, are proving responsive to oligonucleotides and analyzed after increasing lengths of regulation by RAN-GTP (Ciciarello et al., 2007), suggesting incubation. RANBP1 protein abundance decreased by 70% that RAN-GTP does not solely operate via disassembly of after 40 hours and by 80% after 64 hours of RNAi, compared ‘classical’ NLS-importin complexes. Together, these lines of with that detected in control cultures, which were either evidence indicate that RAN-dependent mechanisms must untreated (NT) or treated with control siRNAs, including: GL2, satisfy more complex and finely tuned layers of control in against luciferase (Fig. 1A); 116 siRNA, against the murine cells. Ranbp1 gene, which is related but not identical to the human Studies in somatic cells have largely relied on sequence; and GFP siRNA (supplementary material Fig. S1). overexpression of RAN network components. Although The interference was specific and no variations in either RCC1 overexpression has been useful to elucidate the localization- (Fig. 1A) or RAN (data not shown) abundance were observed. function relationship for members of the network, eliminating Similar results were obtained with three different siRNAs the activity of specific members should ultimately provide targeting different regions of the human RANBP1 gene insight into their role during the mitotic division. Thus far, this (supplementary material Fig. S1). approach has been limited to RCC1, for which a temperature- At the single-cell level, RANBP1 signals were barely or sensitive allele exists that can be inactivated in a conditional not detectable in interfered cells processed for immuno - cell line; the results of inactivation experiments indicate that fluorescence (IF; Fig. 1B). The reduction in RANBP1 levels RCC1 is required for the G2/M transition and in the spindle was associated with a two- to three-fold increase in the overall checkpoint (reviewed by Moore, 2001; Arnaoutov and Dasso, RAN-GTP content (Fig. 1B), as revealed by incubating cells 2005). with the conformational antibody AR12, which reacts with the RAN network members have been inactivated by RNA extended C-terminal region of RAN in the GTP-bound interference (RNAi) in Caenorhabditis elegans, revealing conformation (Richards et al., 1995). AR12 faithfully depicts differential roles of RAN, its regulators and effectors in variations in RAN-GTP levels induced by manipulating RAN spindle assembly and NE reformation after mitosis (Askjaer regulators: parallel to the increase measured in RANBP1- et al., 2002; Bamba et al., 2002). In mammalian cells, RNAi depleted cells (Fig. 1B), we observed a decreased reactivity has been employed to inactivate only RANBP2, a SUMO- in response to RANBP1 overexpression and to RCC1 ligase that regulates the subcellular localization of inactivation, both of which decrease RAN-GTP abundance RANGAP1 but has no direct activity on the RAN cycle: these (supplementary material Fig. S2). Interestingly, some Journal of Cell Science experiments demonstrated that the RANBP2-RANGAP1 cytoplasmic AR12 signals were observed in RANBP1- complex regulates the residency of spindle checkpoint factors interfered cells (Fig. 1B), indicating that RAN-GTP hydrolysis at KTs (Salina et al., 2003; Joseph et al., 2004). Members of was inefficient in the absence of RANBP1. the RAN network ‘core’ have not been inactivated in somatic RANBP1 depletion yielded morphological changes in cell cells thus far. shape, with a striking reorganization of MTs in the RANBP1 is the only cell cycle-regulated member of the cytoskeleton and a typically elongated morphology (Fig. 1C). RAN network in mammalian cells, with highest levels Scoring of cells after DAPI and lamin B1 staining visualized
Recommended publications
  • XPO1E571K Mutation Modifies Exportin 1 Localisation And
    cancers Article XPO1E571K Mutation Modifies Exportin 1 Localisation and Interactome in B-Cell Lymphoma Hadjer Miloudi 1, Élodie Bohers 1,2, François Guillonneau 3 , Antoine Taly 4,5 , Vincent Cabaud Gibouin 6,7 , Pierre-Julien Viailly 1,2 , Gaëtan Jego 6,7 , Luca Grumolato 8 , Fabrice Jardin 1,2 and Brigitte Sola 1,* 1 INSERM U1245, Unicaen, Normandie University, F-14000 Caen, France; [email protected] (H.M.); [email protected] (E.B.); [email protected] (P.-J.V.); [email protected] (F.J.) 2 Centre de lutte contre le Cancer Henri Becquerel, F-76000 Rouen, France 3 Plateforme Protéomique 3P5, Université de Paris, Institut Cochin, INSERM, CNRS, F-75014 Paris, France; [email protected] 4 Laboratoire de Biochimie Théorique, CNRS UPR 9030, Université de Paris, F-75005 Paris, France; [email protected] 5 Institut de Biologie Physico-Chimique, Fondation Edmond de Rothschild, PSL Research University, F-75005 Paris, France 6 INSERM, LNC UMR1231, F-21000 Dijon, France; [email protected] (V.C.G.); [email protected] (G.J.) 7 Team HSP-Pathies, University of Burgundy and Franche-Comtée, F-21000 Dijon, France 8 INSERM U1239, Unirouen, Normandie University, F-76130 Mont-Saint-Aignan, France; [email protected] * Correspondence: [email protected]; Tel.: +33-2-3156-8210 Received: 11 September 2020; Accepted: 28 September 2020; Published: 30 September 2020 Simple Summary: Almost 25% of patients with either primary mediastinal B-cell lymphoma (PMBL) or classical Hodgkin lymphoma (cHL) possess a recurrent mutation of the XPO1 gene encoding the major nuclear export protein.
    [Show full text]
  • UNIVERSITY of CALIFORNIA, SAN DIEGO Functional Analysis of Sall4
    UNIVERSITY OF CALIFORNIA, SAN DIEGO Functional analysis of Sall4 in modulating embryonic stem cell fate A dissertation submitted in partial satisfaction of the requirements for the degree Doctor of Philosophy in Molecular Pathology by Pei Jen A. Lee Committee in charge: Professor Steven Briggs, Chair Professor Geoff Rosenfeld, Co-Chair Professor Alexander Hoffmann Professor Randall Johnson Professor Mark Mercola 2009 Copyright Pei Jen A. Lee, 2009 All rights reserved. The dissertation of Pei Jen A. Lee is approved, and it is acceptable in quality and form for publication on microfilm and electronically: ______________________________________________________________ ______________________________________________________________ ______________________________________________________________ ______________________________________________________________ Co-Chair ______________________________________________________________ Chair University of California, San Diego 2009 iii Dedicated to my parents, my brother ,and my husband for their love and support iv Table of Contents Signature Page……………………………………………………………………….…iii Dedication…...…………………………………………………………………………..iv Table of Contents……………………………………………………………………….v List of Figures…………………………………………………………………………...vi List of Tables………………………………………………….………………………...ix Curriculum vitae…………………………………………………………………………x Acknowledgement………………………………………………….……….……..…...xi Abstract………………………………………………………………..…………….....xiii Chapter 1 Introduction ..…………………………………………………………………………….1 Chapter 2 Materials and Methods……………………………………………………………..…12
    [Show full text]
  • 1 Supporting Information for a Microrna Network Regulates
    Supporting Information for A microRNA Network Regulates Expression and Biosynthesis of CFTR and CFTR-ΔF508 Shyam Ramachandrana,b, Philip H. Karpc, Peng Jiangc, Lynda S. Ostedgaardc, Amy E. Walza, John T. Fishere, Shaf Keshavjeeh, Kim A. Lennoxi, Ashley M. Jacobii, Scott D. Rosei, Mark A. Behlkei, Michael J. Welshb,c,d,g, Yi Xingb,c,f, Paul B. McCray Jr.a,b,c Author Affiliations: Department of Pediatricsa, Interdisciplinary Program in Geneticsb, Departments of Internal Medicinec, Molecular Physiology and Biophysicsd, Anatomy and Cell Biologye, Biomedical Engineeringf, Howard Hughes Medical Instituteg, Carver College of Medicine, University of Iowa, Iowa City, IA-52242 Division of Thoracic Surgeryh, Toronto General Hospital, University Health Network, University of Toronto, Toronto, Canada-M5G 2C4 Integrated DNA Technologiesi, Coralville, IA-52241 To whom correspondence should be addressed: Email: [email protected] (M.J.W.); yi- [email protected] (Y.X.); Email: [email protected] (P.B.M.) This PDF file includes: Materials and Methods References Fig. S1. miR-138 regulates SIN3A in a dose-dependent and site-specific manner. Fig. S2. miR-138 regulates endogenous SIN3A protein expression. Fig. S3. miR-138 regulates endogenous CFTR protein expression in Calu-3 cells. Fig. S4. miR-138 regulates endogenous CFTR protein expression in primary human airway epithelia. Fig. S5. miR-138 regulates CFTR expression in HeLa cells. Fig. S6. miR-138 regulates CFTR expression in HEK293T cells. Fig. S7. HeLa cells exhibit CFTR channel activity. Fig. S8. miR-138 improves CFTR processing. Fig. S9. miR-138 improves CFTR-ΔF508 processing. Fig. S10. SIN3A inhibition yields partial rescue of Cl- transport in CF epithelia.
    [Show full text]
  • RANBP1 (NM 002882) Human Recombinant Protein – TP323305 | Origene
    OriGene Technologies, Inc. 9620 Medical Center Drive, Ste 200 Rockville, MD 20850, US Phone: +1-888-267-4436 [email protected] EU: [email protected] CN: [email protected] Product datasheet for TP323305 RANBP1 (NM_002882) Human Recombinant Protein Product data: Product Type: Recombinant Proteins Description: Recombinant protein of human RAN binding protein 1 (RANBP1) Species: Human Expression Host: HEK293T Tag: C-Myc/DDK Predicted MW: 23.1 kDa Concentration: >50 ug/mL as determined by microplate BCA method Purity: > 80% as determined by SDS-PAGE and Coomassie blue staining Buffer: 25 mM Tris.HCl, pH 7.3, 100 mM glycine, 10% glycerol Preparation: Recombinant protein was captured through anti-DDK affinity column followed by conventional chromatography steps. Storage: Store at -80°C. Stability: Stable for 12 months from the date of receipt of the product under proper storage and handling conditions. Avoid repeated freeze-thaw cycles. RefSeq: NP_002873 Locus ID: 5902 UniProt ID: P04049, P43487, L7RRS6, A0A140VK94 RefSeq Size: 884 Cytogenetics: 22q11.21 RefSeq ORF: 603 Synonyms: HTF9A Summary: This gene encodes a protein that forms a complex with Ras-related nuclear protein (Ran) and metabolizes guanoside triphosphate (GTP). This complex participates in the regulation of the cell cycle by controlling transport of proteins and nucleic acids into the nucleus. There are multiple pseudogenes for this gene on chromosomes 9, 12, 17, and X. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2013] This product is to be used for laboratory only. Not for diagnostic or therapeutic use. View online » ©2021 OriGene Technologies, Inc., 9620 Medical Center Drive, Ste 200, Rockville, MD 20850, US 1 / 2 RANBP1 (NM_002882) Human Recombinant Protein – TP323305 Product images: Coomassie blue staining of purified RANBP1 protein (Cat# TP323305).
    [Show full text]
  • Small Gtpase Ran and Ran-Binding Proteins
    BioMol Concepts, Vol. 3 (2012), pp. 307–318 • Copyright © by Walter de Gruyter • Berlin • Boston. DOI 10.1515/bmc-2011-0068 Review Small GTPase Ran and Ran-binding proteins Masahiro Nagai 1 and Yoshihiro Yoneda 1 – 3, * highly abundant and strongly conserved GTPase encoding ∼ 1 Biomolecular Dynamics Laboratory , Department a 25 kDa protein primarily located in the nucleus (2) . On of Frontier Biosciences, Graduate School of Frontier the one hand, as revealed by a substantial body of work, Biosciences, Osaka University, 1-3 Yamada-oka, Suita, Ran has been found to have widespread functions since Osaka 565-0871 , Japan its initial discovery. Like other small GTPases, Ran func- 2 Department of Biochemistry , Graduate School of Medicine, tions as a molecular switch by binding to either GTP or Osaka University, 2-2 Yamada-oka, Suita, Osaka 565-0871 , GDP. However, Ran possesses only weak GTPase activ- Japan ity, and several well-known ‘ Ran-binding proteins ’ aid in 3 Japan Science and Technology Agency , Core Research for the regulation of the GTPase cycle. Among such partner Evolutional Science and Technology, Osaka University, 1-3 molecules, RCC1 was originally identifi ed as a regulator of Yamada-oka, Suita, Osaka 565-0871 , Japan mitosis in tsBN2, a temperature-sensitive hamster cell line (3) ; RCC1 mediates the conversion of RanGDP to RanGTP * Corresponding author in the nucleus and is mainly associated with chromatin (4) e-mail: [email protected] through its interactions with histones H2A and H2B (5) . On the other hand, the GTP hydrolysis of Ran is stimulated by the Ran GTPase-activating protein (RanGAP) (6) , in con- Abstract junction with Ran-binding protein 1 (RanBP1) and/or the large nucleoporin Ran-binding protein 2 (RanBP2, also Like many other small GTPases, Ran functions in eukaryotic known as Nup358).
    [Show full text]
  • Destabilization of Ran C-Terminus Promotes GTP Loading and Occurs
    bioRxiv preprint doi: https://doi.org/10.1101/305177; this version posted April 20, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. Destabilization of Ran C-terminus promotes GTP loading and occurs in multiple Ran cancer mutations Yuqing Zhang1#, Jinhan Zhou1#, Yuping Tan1, Qiao Zhou1, Aiping Tong1, Xiaofei Shen1,2, Da Jia1,2, Xiaodong Sun3, Qingxiang Sun1* 1Department of Pathology and State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, and Collaborative Innovation Center for Biotherapy, Chengdu 610041, China 2Key Laboratory of Birth Defects and Related Diseases of Women and Children, Department of Paediatrics, Division of Neurology, West China Second University Hospital, Sichuan University, Chengdu 610041, China 3 Department of Pharmacology, West China School of Basic Medical Sciences and Forensic Medicine, Sichuan University, Chengdu 610041, China #Equal contribution *Corresponding author: [email protected] Abstract Ran (Ras-related nuclear protein) plays several important roles in nucleo-cytoplasmic transport, mitotic spindle formation, nuclear envelope/nuclear pore complex assembly, and other diverse functions in the cytoplasm, as well as in cellular transformation when activated. Unlike other Ras superfamily proteins, Ran contains an auto-inhibitory C-terminal tail, which packs against its G domain and bias Ran towards binding GDP over GTP. The biological importance of this C- terminal tail is not well understood. By disrupting the interaction between the C-terminus and the G domain, we were able to generate Ran mutants that are innately active and potently bind to RanBP1 (Ran Binding Protein 1), nuclear export factor CRM1 and nuclear import factor KPNB1.
    [Show full text]
  • Distinct Ranbp1 Nuclear Export and Cargo Dissociation Mechanisms
    RESEARCH ARTICLE Distinct RanBP1 nuclear export and cargo dissociation mechanisms between fungi and animals Yuling Li1†, Jinhan Zhou1†, Sui Min1†, Yang Zhang2, Yuqing Zhang1, Qiao Zhou1, Xiaofei Shen3, Da Jia3, Junhong Han2, Qingxiang Sun1* 1Department of Pathology, State Key Laboratory of Biotherapy and Cancer Center, West China Hospital, Sichuan University, Collaborative Innovation Centre of Biotherapy, Chengdu, China; 2Division of Abdominal Cancer, State Key Laboratory of Biotherapy and Cancer Center, West China Hospital, Sichuan University, Collaborative Innovation Centre for Biotherapy, Chengdu, China; 3Key Laboratory of Birth Defects and Related Diseases of Women and Children, Department of Paediatrics, Division of Neurology, West China Second University Hospital, Sichuan University, Chengdu, China Abstract Ran binding protein 1 (RanBP1) is a cytoplasmic-enriched and nuclear-cytoplasmic shuttling protein, playing important roles in nuclear transport. Much of what we know about RanBP1 is learned from fungi. Intrigued by the long-standing paradox of harboring an extra NES in animal RanBP1, we discovered utterly unexpected cargo dissociation and nuclear export mechanisms for animal RanBP1. In contrast to CRM1-RanGTP sequestration mechanism of cargo dissociation in fungi, animal RanBP1 solely sequestered RanGTP from nuclear export complexes. In fungi, RanBP1, CRM1 and RanGTP formed a 1:1:1 nuclear export complex; in contrast, animal RanBP1, CRM1 and RanGTP formed a 1:1:2 nuclear export complex. The key feature for the two mechanistic changes from fungi to animals was the loss of affinity between RanBP1-RanGTP and *For correspondence: CRM1, since residues mediating their interaction in fungi were not conserved in animals. The [email protected] biological significances of these different mechanisms in fungi and animals were also studied.
    [Show full text]
  • A High-Throughput Approach to Uncover Novel Roles of APOBEC2, a Functional Orphan of the AID/APOBEC Family
    Rockefeller University Digital Commons @ RU Student Theses and Dissertations 2018 A High-Throughput Approach to Uncover Novel Roles of APOBEC2, a Functional Orphan of the AID/APOBEC Family Linda Molla Follow this and additional works at: https://digitalcommons.rockefeller.edu/ student_theses_and_dissertations Part of the Life Sciences Commons A HIGH-THROUGHPUT APPROACH TO UNCOVER NOVEL ROLES OF APOBEC2, A FUNCTIONAL ORPHAN OF THE AID/APOBEC FAMILY A Thesis Presented to the Faculty of The Rockefeller University in Partial Fulfillment of the Requirements for the degree of Doctor of Philosophy by Linda Molla June 2018 © Copyright by Linda Molla 2018 A HIGH-THROUGHPUT APPROACH TO UNCOVER NOVEL ROLES OF APOBEC2, A FUNCTIONAL ORPHAN OF THE AID/APOBEC FAMILY Linda Molla, Ph.D. The Rockefeller University 2018 APOBEC2 is a member of the AID/APOBEC cytidine deaminase family of proteins. Unlike most of AID/APOBEC, however, APOBEC2’s function remains elusive. Previous research has implicated APOBEC2 in diverse organisms and cellular processes such as muscle biology (in Mus musculus), regeneration (in Danio rerio), and development (in Xenopus laevis). APOBEC2 has also been implicated in cancer. However the enzymatic activity, substrate or physiological target(s) of APOBEC2 are unknown. For this thesis, I have combined Next Generation Sequencing (NGS) techniques with state-of-the-art molecular biology to determine the physiological targets of APOBEC2. Using a cell culture muscle differentiation system, and RNA sequencing (RNA-Seq) by polyA capture, I demonstrated that unlike the AID/APOBEC family member APOBEC1, APOBEC2 is not an RNA editor. Using the same system combined with enhanced Reduced Representation Bisulfite Sequencing (eRRBS) analyses I showed that, unlike the AID/APOBEC family member AID, APOBEC2 does not act as a 5-methyl-C deaminase.
    [Show full text]
  • A Catalog of Hemizygous Variation in 127 22Q11 Deletion Patients
    A catalog of hemizygous variation in 127 22q11 deletion patients. Matthew S Hestand, KU Leuven, Belgium Beata A Nowakowska, KU Leuven, Belgium Elfi Vergaelen, KU Leuven, Belgium Jeroen Van Houdt, KU Leuven, Belgium Luc Dehaspe, UZ Leuven, Belgium Joshua A Suhl, Emory University Jurgen Del-Favero, University of Antwerp Geert Mortier, Antwerp University Hospital Elaine Zackai, The Children's Hospital of Philadelphia Ann Swillen, KU Leuven, Belgium Only first 10 authors above; see publication for full author list. Journal Title: Human Genome Variation Volume: Volume 3 Publisher: Nature Publishing Group: Open Access Journals - Option B | 2016-01-14, Pages 15065-15065 Type of Work: Article | Final Publisher PDF Publisher DOI: 10.1038/hgv.2015.65 Permanent URL: https://pid.emory.edu/ark:/25593/rncxx Final published version: http://dx.doi.org/10.1038/hgv.2015.65 Copyright information: © 2016 Official journal of the Japan Society of Human Genetics This is an Open Access work distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/). Accessed September 28, 2021 7:41 PM EDT OPEN Citation: Human Genome Variation (2016) 3, 15065; doi:10.1038/hgv.2015.65 Official journal of the Japan Society of Human Genetics 2054-345X/16 www.nature.com/hgv ARTICLE A catalog of hemizygous variation in 127 22q11 deletion patients Matthew S Hestand1, Beata A Nowakowska1,2,Elfi Vergaelen1, Jeroen Van Houdt1,3, Luc Dehaspe3, Joshua A Suhl4, Jurgen Del-Favero5, Geert Mortier6, Elaine Zackai7,8, Ann Swillen1, Koenraad Devriendt1, Raquel E Gur8, Donna M McDonald-McGinn7,8, Stephen T Warren4, Beverly S Emanuel7,8 and Joris R Vermeesch1 The 22q11.2 deletion syndrome is the most common microdeletion disorder, with wide phenotypic variability.
    [Show full text]
  • RANBP1 (1-201, His-Tag) Human Protein – AR50291PU-N | Origene
    OriGene Technologies, Inc. 9620 Medical Center Drive, Ste 200 Rockville, MD 20850, US Phone: +1-888-267-4436 [email protected] EU: [email protected] CN: [email protected] Product datasheet for AR50291PU-N RANBP1 (1-201, His-tag) Human Protein Product data: Product Type: Recombinant Proteins Description: RANBP1 (1-201, His-tag) human recombinant protein, 0.5 mg Species: Human Expression Host: E. coli Tag: His-tag Predicted MW: 25.8 kDa Concentration: lot specific Purity: >95% by SDS - PAGE Buffer: Presentation State: Purified State: Liquid purified protein Buffer System: 20 mM Tris-HCl buffer (pH 8.0) containing 1mM DTT, 10% glycerol, 0.1M NaCl Preparation: Liquid purified protein Protein Description: Recombinant human RANBP1 protein, fused to His-tag at N-terminus, was expressed in E.coli and purified by using conventional chromatography techniques. Storage: Store undiluted at 2-8°C for one week or (in aliquots) at -20°C to -80°C for longer. Avoid repeated freezing and thawing. Stability: Shelf life: one year from despatch. RefSeq: NP_001265568 Locus ID: 5902 UniProt ID: P43487, F6WQW2 Cytogenetics: 22q11.21 Synonyms: HTF9A Summary: This gene encodes a protein that forms a complex with Ras-related nuclear protein (Ran) and metabolizes guanoside triphosphate (GTP). This complex participates in the regulation of the cell cycle by controlling transport of proteins and nucleic acids into the nucleus. There are multiple pseudogenes for this gene on chromosomes 9, 12, 17, and X. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2013] This product is to be used for laboratory only.
    [Show full text]
  • Deregulated Expression of the Ranbp1 Gene Alters Cell Cycle Progression in Murine fibroblasts
    Journal of Cell Science 110, 2345-2357 (1997) 2345 Printed in Great Britain © The Company of Biologists Limited 1997 JCS3614 Deregulated expression of the RanBP1 gene alters cell cycle progression in murine fibroblasts Alessandra Battistoni1,*, Giulia Guarguaglini1,*, Francesca Degrassi1, Carmine Pittoggi1,†, Antonella Palena1, Gigliola Di Matteo1, Claudio Pisano2, Enrico Cundari1 and Patrizia Lavia1,‡ 1National Research Council Center of Evolutionary Genetics, c/o Department of Genetics and Molecular Biology, University of Rome ‘La Sapienza’, Via degli Apuli 4, Rome 00185, Italy 2Department of Cellular Fisiopathology, Sigma Tau Research Institute, Pomezia (Rome), Italy *Both authors contributed equally to this work †Present address: CNR Institute of Biomedical Technology (TBM), Via Morgagni 30, 00185 Rome, Italy ‡Author for correspondence (e-mail: [email protected]) SUMMARY RanBP1 is a molecular partner of the Ran GTPase, which defective mitotic exit and failure of chromatin decondensa- is implicated in the control of several processes, including tion during the telophase-to-interphase transition in cells DNA replication, mitotic entry and exit, cell cycle progres- that achieve nuclear duplication and chromosome segrega- sion, nuclear structure, protein import and RNA export. tion. These results suggest that deregulated RanBP1 While most genes encoding Ran-interacting partners are activity interferes with the Ran GTPase cycle and prevents constitutively active, transcription of the RanBP1 mRNA is the functioning of the Ran signalling system during the cell repressed in non proliferating cells, is activated at the G1/S cycle. transition in cycling cells and peaks during S phase. We report here that forced expression of the RanBP1 gene disrupts the orderly execution of the cell division cycle at Key words: RanBP1, Ran, RCC1, Cell cycle, S phase, Mitosis, several stages, causing inhibition of DNA replication, Chromatin INTRODUCTION formation of Ran-GDP.
    [Show full text]
  • NES Consensus Redefined by Structures of PKI-Type and Rev-Type Nuclear Export Signals Bound to CRM1
    ARTICLES NES consensus redefined by structures of PKI-type and Rev-type nuclear export signals bound to CRM1 Thomas Güttler1,5, Tobias Madl2,3,5, Piotr Neumann4,5, Danilo Deichsel1, Lorenzo Corsini2,3, Thomas Monecke4, Ralf Ficner4, Michael Sattler2,3 & Dirk Görlich1 Classic nuclear export signals (NESs) confer CRM1-dependent nuclear export. Here we present crystal structures of the RanGTP−CRM1 complex alone and bound to the prototypic PKI or HIV-1 Rev NESs. These NESs differ markedly in the spacing of their key hydrophobic (F) residues, yet CRM1 recognizes them with the same rigid set of five F pockets. The different F spacings are compensated for by different conformations of the bound NESs: in the case of PKI, an a-helical conformation, and in the case of Rev, an extended conformation with a critical proline docking into a F pocket. NMR analyses of CRM1-bound and CRM1-free PKI NES suggest that CRM1 selects NES conformers that pre-exist in solution. Our data lead to a new structure-based NES consensus, and explain why NESs differ in their affinities for CRM1 and why supraphysiological NESs bind the exportin so tightly. Nuclear export is essential for eukaryotic life. It proceeds through HIV-1, for example, uses CRM1 to export its genomic RNA from nuclear pore complexes (NPCs) and is typically accomplished by nuclei4,19,20. The HIV-1 Rev protein is an adaptor in this process. It exportins1,2. The most versatile exportin is CRM1 (also called binds the unspliced viral RNA, recruits CRM1 and thereby triggers exportin 1 or Xpo1p)3–7.
    [Show full text]