Species-Specific Gamete Recognition Initiates Fusion-Driving Trimer
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BBA - Biomembranes 1860 (2018) 566–578
BBA - Biomembranes 1860 (2018) 566–578 Contents lists available at ScienceDirect BBA - Biomembranes journal homepage: www.elsevier.com/locate/bbamem Reconstitution of SNARE proteins into solid-supported lipid bilayer stacks T and X-ray structure analysis Yihui Xua, Jan Kuhlmannb, Martha Brennichc, Karlo Komorowskia, Reinhard Jahnd, Claudia Steinemb, Tim Salditta,* a Institut für Röntgenphysik, Universität Göttingen, Friedrich-Hund-Platz 1, 37077 Göttingen, Germany b Institut für Organische und Biomolekulare Chemie, Universität Göttingen, Tammannstraße 2, Göttingen 37077, Germany c Structural Biology Group, European Synchrotron Radiation Facility, 71 Avenue des Martyrs, CS 90181, Grenoble 38042, France d Department of Neurobiology, Max-Planck Institute for Biophysical Chemistry, Am Faßberg 11, Göttingen 37077, Germany ARTICLE INFO ABSTRACT Keywords: SNAREs are known as an important family of proteins mediating vesicle fusion. For various biophysical studies, SNARE reconstitution they have been reconstituted into supported single bilayers via proteoliposome adsorption and rupture. In this Supported lipid bilayer stack study we extended this method to the reconstitution of SNAREs into supported multilamellar lipid membranes, Micelle and vesicle i.e. oriented multibilayer stacks, as an ideal model system for X-ray structure analysis (X-ray reflectivity and SAXS diffraction). The reconstitution was implemented through a pathway of proteomicelle, proteoliposome and X-ray reflectivity multibilayer. To monitor the structural evolution in each step, we used small-angle X-ray scattering for the GISAXS proteomicelles and proteoliposomes, followed by X-ray reflectivity and grazing-incidence small-angle scattering for the multibilayers. Results show that SNAREs can be successfully reconstituted into supported multibilayers, with high enough orientational alignment for the application of surface sensitive X-ray characterizations. -
Molecular Biology and Applied Genetics
MOLECULAR BIOLOGY AND APPLIED GENETICS FOR Medical Laboratory Technology Students Upgraded Lecture Note Series Mohammed Awole Adem Jimma University MOLECULAR BIOLOGY AND APPLIED GENETICS For Medical Laboratory Technician Students Lecture Note Series Mohammed Awole Adem Upgraded - 2006 In collaboration with The Carter Center (EPHTI) and The Federal Democratic Republic of Ethiopia Ministry of Education and Ministry of Health Jimma University PREFACE The problem faced today in the learning and teaching of Applied Genetics and Molecular Biology for laboratory technologists in universities, colleges andhealth institutions primarily from the unavailability of textbooks that focus on the needs of Ethiopian students. This lecture note has been prepared with the primary aim of alleviating the problems encountered in the teaching of Medical Applied Genetics and Molecular Biology course and in minimizing discrepancies prevailing among the different teaching and training health institutions. It can also be used in teaching any introductory course on medical Applied Genetics and Molecular Biology and as a reference material. This lecture note is specifically designed for medical laboratory technologists, and includes only those areas of molecular cell biology and Applied Genetics relevant to degree-level understanding of modern laboratory technology. Since genetics is prerequisite course to molecular biology, the lecture note starts with Genetics i followed by Molecular Biology. It provides students with molecular background to enable them to understand and critically analyze recent advances in laboratory sciences. Finally, it contains a glossary, which summarizes important terminologies used in the text. Each chapter begins by specific learning objectives and at the end of each chapter review questions are also included. -
Micropropagation, Genetic Engineering, and Molecular Biology Expression Vectors Containing the Gene(S) and Promoter(S) of Populus
This file was created by scanning the printed publication. Errors identified by the software have been corrected; however, some errors may remain. Chapter 11 Growth and Development Alteration in Transgenic Populus: Status and Potential Applications1 Bjorn Sundberg, Hannele Tuominen, Ove Nilsson, Thomas Moritz, c. H. Anthony Little, Goran Sandberg, and Olof Olsson Introduction Using Transgenic Populus to Study Growth and Development With the development of gene-transfer techniques appli cable to forest tree species, genetic engineering is becoming in Woody Species an alternative to traditional tree breeding. To date, routine transformation methods for several hardwood species, par The best model system for understanding the genetic ticularly Populus and Eucalyptus, have been established and and physiological control of tree growth and wood for promising advances have occurred in the development ~f mation is a perennial species containing a vascular cam transformation protocols for conifers (Olarest et al. 1996; Ellis bium, which is the meristem that produces secondary et al. 1996; Jouanin et al. 1993; Walters et al. 1995). Rapid xylem and phloem. Presently, Populus is the preferred tree progress in transformation technology makes it possible to model system because it has several useful fea.tures. develop genetic engineering tools that modify economically Populus has a small genome, approximately 5 x lOS base tractable parameters related to growth and yield in tree spe pairs (bp ), which encourages molecular mapping, library cies. Such work will also increase our understanding of ge screening, and rescue cloning. Saturated genetic maps are netic and physiological regulation of growth and already constructed for several Populus spp. (Bradshaw et development in woody species. -
Glossary/Index
Glossary 03/08/2004 9:58 AM Page 119 GLOSSARY/INDEX The numbers after each term represent the chapter in which it first appears. additive 2 allele 2 When an allele’s contribution to the variation in a One of two or more alternative forms of a gene; a single phenotype is separately measurable; the independent allele for each gene is inherited separately from each effects of alleles “add up.” Antonym of nonadditive. parent. ADHD/ADD 6 Alzheimer’s disease 5 Attention Deficit Hyperactivity Disorder/Attention A medical disorder causing the loss of memory, rea- Deficit Disorder. Neurobehavioral disorders character- soning, and language abilities. Protein residues called ized by an attention span or ability to concentrate that is plaques and tangles build up and interfere with brain less than expected for a person's age. With ADHD, there function. This disorder usually first appears in persons also is age-inappropriate hyperactivity, impulsive over age sixty-five. Compare to early-onset Alzheimer’s. behavior or lack of inhibition. There are several types of ADHD: a predominantly inattentive subtype, a predomi- amino acids 2 nantly hyperactive-impulsive subtype, and a combined Molecules that are combined to form proteins. subtype. The condition can be cognitive alone or both The sequence of amino acids in a protein, and hence pro- cognitive and behavioral. tein function, is determined by the genetic code. adoption study 4 amnesia 5 A type of research focused on families that include one Loss of memory, temporary or permanent, that can result or more children raised by persons other than their from brain injury, illness, or trauma. -
Hemifusion and Lateral Lipid Domain Partition in Lipid Membranes of Different Complexity
Dissertation Hemifusion and lateral lipid domain partition in lipid membranes of different complexity zur Erlangung des akademischen Grades doctor rerum naturalium (Dr. rer. nat.) im Fach Biophysik eingereicht an der Mathematisch-Naturwissenschaftlichen Fakultät I der Humboldt-Universität zu Berlin von Diplom Biophysiker Jörg Nikolaus Präsident der Humboldt-Universität zu Berlin Prof. Dr. Jan-Hendrik Olbertz Dekan der Mathematisch-Naturwissenschaftlichen Fakultät I Prof. Dr. Andreas Herrmann Gutachter: 1. Prof. Dr. Andreas Herrmann 2. Prof. Dr. Sandro Keller 3. Prof. Dr. Daniel Huster eingereicht: 16.12.2010 Datum der Promotion: 21.04.2011 „It’s unoptimized - by evolution” Jacob Piehler (* 10.04.1968) Zusammenfassung Die Fusion von Membranen erfordert die Verschmelzung von zwei Phospholipiddoppel- schichten, wobei dies immer über dieselben Zwischenschritte abzulaufen scheint. Eine lokale Störung (‚Stalk’) stellt eine erste Verbindung der äußeren Membranhälften dar, die anschließend lateral expandiert und ein Hemifusionsdiaphragma (HD) bildet. Das Öffnen einer Fusionspore im HD führt zur vollständigen Fusion. Mittels konfokaler Mikroskopie wurde die Fusion von Giant unilamellar vesicles (GUVs) mit negativ geladenen Lipiden und transmembranen (TM) Peptiden in Anwesenheit von zweiwertigen Kationen beobachtet, wobei die Peptide bei der HD Entstehung völlig verdrängt wurden. Eine detaillierte Analyse zeigte, dass es sich bei diesem Mikrometer-großen Bereich um ein HD handelt, dessen Größe von der Lipidzusammensetzung und Peptidkonzentration -
Handbook of Epigenetics: the New Molecular and Medical Genetics
CHAPTER 21 Epigenetics, Stem Cells, Cellular Differentiation, and Associated Hereditary Neurological Disorders Bhairavi Srinageshwar*, Panchanan Maiti*,**, Gary L. Dunbar*,**, Julien Rossignol* *Central Michigan University, Mt. Pleasant, MI, United States; **Field Neurosciences Institute, Saginaw, MI, United States OUTLINE Introduction to Epigenetics 323 Histones and Their Structure 325 Epigenetics and Neurological Disorders 326 Epigenetics and the Human Brain 324 Stem Cells 324 Conclusions 335 Eukaryotic Chromosomal Organization 325 References 336 INTRODUCTION TO EPIGENETICS changes are discussed in detail elsewhere [3,4], but are briefly described later as an overview for this chapter. Epigenetics is defined as structural and functional DNA methylation. DNA methylation and some of the changes occurring in histones and DNA, in the absence histone modifications are interdependent and play an of alterations of the DNA sequence, which, in turn, has important role in gene activation and repression during a significant impact on how gene expression is altered development [5]. DNA methylation reactions are cata- in a cell [1]. The term “epigenetics” was coined by the lyzed by a family of enzymes called DNA methyl trans- famous developmental biologist, Cornard Hal Wad- ferases (DNMTs), which add methyl groups to a cytosine dington, as “the branch of biology that studies the causal base of the DNA at the 5’-end, giving rise to the 5’-methyl interactions between genes and their products, which cytosine. This reaction can either activate or repress gene bring the phenotype into being”[2]. Epigenetics bridge expression, depending on the site of methylation and it the gap between the environment and gene expression, can also determine how well the enzymes for gene tran- which was once believed to function independently [3]. -
Molecular Mechanism of Fusion Pore Formation Driven by the Neuronal SNARE Complex
Molecular mechanism of fusion pore formation driven by the neuronal SNARE complex Satyan Sharmaa,1 and Manfred Lindaua,b aLaboratory for Nanoscale Cell Biology, Max Planck Institute for Biophysical Chemistry, 37077 Göttingen, Germany and bSchool of Applied and Engineering Physics, Cornell University, Ithaca, NY 14850 Edited by Axel T. Brunger, Stanford University, Stanford, CA, and approved November 1, 2018 (received for review October 2, 2018) Release of neurotransmitters from synaptic vesicles begins with a systems in which various copy numbers of syb2 were incorporated narrow fusion pore, the structure of which remains unresolved. To in an ND while the t-SNAREs were present on a liposome have obtain a structural model of the fusion pore, we performed coarse- been used experimentally to study SNARE-mediated mem- grained molecular dynamics simulations of fusion between a brane fusion (13, 17). The small dimensions of the ND compared nanodisc and a planar bilayer bridged by four partially unzipped with a spherical vesicle makes such systems ideally suited for MD SNARE complexes. The simulations revealed that zipping of SNARE simulations without introducing extreme curvature, which is well complexes pulls the polar C-terminal residues of the synaptobrevin known to strongly influence the propensity of fusion (18–20). 2 and syntaxin 1A transmembrane domains to form a hydrophilic MARTINI-based CGMD simulations have been used in several – core between the two distal leaflets, inducing fusion pore forma- studies of membrane fusion (16, 21 23). To elucidate the fusion tion. The estimated conductances of these fusion pores are in good pore structure and the mechanism of its formation, we performed agreement with experimental values. -
Primer on Molecular Genetics
DOE Human Genome Program Primer on Molecular Genetics Date Published: June 1992 U.S. Department of Energy Office of Energy Research Office of Health and Environmental Research Washington, DC 20585 The "Primer on Molecular Genetics" is taken from the June 1992 DOE Human Genome 1991-92 Program Report. The primer is intended to be an introduction to basic principles of molecular genetics pertaining to the genome project. Human Genome Management Information System Oak Ridge National Laboratory 1060 Commerce Park Oak Ridge, TN 37830 Voice: 865/576-6669 Fax: 865/574-9888 E-mail: [email protected] 2 Contents Primer on Molecular Introduction ............................................................................................................. 5 Genetics DNA............................................................................................................................... 6 Genes............................................................................................................................ 7 Revised and expanded Chromosomes ............................................................................................................... 8 by Denise Casey (HGMIS) from the Mapping and Sequencing the Human Genome ...................................... 10 primer contributed by Charles Cantor and Mapping Strategies ..................................................................................................... 11 Sylvia Spengler Genetic Linkage Maps ........................................................................................... -
Structural Proteins from Dengue Virus Caracteriz
INSTITUTO DE BIOLOGÍA MOLECULAR Y CELULAR (IBMC) UNIVERSIDAD MIGUEL HERNÁNDEZ DE ELCHE BIOPHYSICAL CHARACTERIZATION OF MEMBRANE- ACTIVE REGIONS OF STRUCTURAL AND NON- STRUCTURAL PROTEINS FROM DENGUE VIRUS CARACTERIZACIÓN BIOFÍSICA DE LAS REGIONES MEMBRANO-ACTIVAS DE PROTEÍNAS ESTRUCTURALES Y NO ESTRUCTURALES DEL VIRUS DEL DENGUE Henrique de Castro Nemésio PhD Thesis / Tesis Doctoral 2014 2 D. Antonio Ferrer Montiel, Catedrático de Bioquímica y Biología Molecular y Celular y Director del Instituto de Biología Molecular y Celular de la Universidad Miguel Hernández de Elche, DA SU CONFORMIDAD a la lectura de tesis doctoral titulada: “Biophysical characterization of membrane-active regions of structural and non- structural proteins from Dengue Virus” / ” Caracterización biofísica de las regiones membrano-activas de proteínas estructurales y no estructurales del virus del Dengue”, para optar al grado de Doctor en Ciencias presentada por D. Henrique de Castro Nemésio. Para que conste y surta los efectos oportunos, firma el presente certificado en Elche, a 25 de Junio de 2014. Fdo. Prof. Antonio Ferrer Montiel 3 4 Don José Villalaín Boullón, Doctor en Ciencias, Investigador del Instituto de Biología Molecular y Celular y Catedrático de Bioquímica y Biología Molecular de la Universidad Miguel Hernández de Elche, CERTIFICA: Que el trabajo de investigación que conduce a la obtención del grado de doctor titulado: “Biophysical characterization of membrane-active regions of structural and non-structural proteins from Dengue Virus” / ” Caracterización biofísica de las regiones membrano-activas de proteínas estructurales y no estructurales del virus del Dengue”, del que es autor D. Henrique de Castro Nemésio, ha sido realizado bajo su dirección en el Instituto de Biología Molecular y Celular de la Universidad Miguel Hernández de Elche. -
Microbiology and Molecular Genetics 1
Microbiology and Molecular Genetics 1 For certification and completion of the BS degree, students will take MICROBIOLOGY AND one year of clinical internship in program accredited by the National Accrediting Agency for Clinical Laboratory Science (NAACLS) and MOLECULAR GENETICS affiliated with Oklahoma State University. Students have the options of the following hospitals/programs: Comanche County Memorial Hospital, Microbiology/Cell and Molecular Biology Lawton, OK; St. Francis Hospital, Tulsa, OK; Mercy Hospital, Ada, OK; Mercy Hospital, Ardmore, OK. Microbiology is the hands-on study of bacteria, viruses, fungi and algae and their many relationships to humans, animals, plants and the Medical Laboratory Science is unique in allowing students to enter environment. Cell and molecular biology bridges the fields of chemistry, the health profession directly after obtaining a BS degree. Clinical biochemistry and biology as it seeks to understand life and cellular laboratory scientists comprise the third-largest segment of the healthcare processes at the molecular level. Microbiologists apply their knowledge professions and are an important member of the healthcare team, to infectious diseases and pathogenic mechanisms; food production working alongside doctors and nurses. Students who complete and preservation, industrial fermentations which produce chemicals, Microbiology/Cell and Molecular Biology with the MLS option enjoy a drugs, antibiotics, alcoholic beverages and various food products; 100% employment rate upon graduation. biodegradation of toxic chemicals and other materials present in the environment; insect pathology; the exciting and expanding field of Courses biotechnology which endeavors to utilize living organisms to solve GENE 5102 Molecular Genetics important problems in medicine, agriculture, and environmental science; Prerequisites: BIOC 3653 or MICR 3033 and one course in genetics or infectious diseases; and public health and sanitation. -
Coupling Between Refolding of the Influenza Hemagglutinin and Lipid Rearrangements
1384 Biophysical Journal Volume 75 September 1998 1384–1396 A Mechanism of Protein-Mediated Fusion: Coupling between Refolding of the Influenza Hemagglutinin and Lipid Rearrangements Michael M. Kozlov* and Leonid V. Chernomordik# *Department of Physiology and Pharmacology, Sackler Faculty of Medicine, Tel Aviv University, Ramat Aviv, Tel Aviv 69978, Israel, and #The Laboratory of Cellular and Molecular Biophysics, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, Maryland 20892 USA ABSTRACT Although membrane fusion mediated by influenza virus hemagglutinin (HA) is the best characterized example of ubiquitous protein-mediated fusion, it is still not known how the low-pH-induced refolding of HA trimers causes fusion. This refolding involves 1) repositioning of the hydrophobic N-terminal sequence of the HA2 subunit of HA (“fusion peptide”), and 2) the recruitment of additional residues to the a-helical coiled coil of a rigid central rod of the trimer. We propose here a mechanism by which these conformational changes can cause local bending of the viral membrane, priming it for fusion. In this model fusion is triggered by incorporation of fusion peptides into viral membrane. Refolding of a central rod exerts forces that pull the fusion peptides, tending to bend the membrane around HA trimer into a saddle-like shape. Elastic energy drives self-assembly of these HA-containing membrane elements in the plane of the membrane into a ring-like cluster. Bulging of the viral membrane within such cluster yields a dimple growing toward the bound target membrane. Bending stresses in the lipidic top of the dimple facilitate membrane fusion. -
Introduction to Some Aspects of Molecular Genetics
Chapter 4 Aspects of molecular genetcs Introduction to some aspects of molecular genetics Julius van der Werf (partly based on notes from Margaret Katz) University of New England, Armidale, Australia Genetic and Physical maps of the genome .............................................................................................. 35 Molecular markers ................................................................................................................................. 36 Detecting molecular markers.................................................................................................................. 38 Summarizing comments about different molecular markers.................................................................... 41 Linkage maps......................................................................................................................................... 43 Genetic and Physical maps of the genome A layout of the order of genes (loci) as well as the distance between them is called a genetic map. The distances in a genetic map are determined according to the recombination fraction between two loci. The unit of measure is Morgans (or Centi- Morgans-cM), representing the recombination frequency between the two locations. One cM is one recombination event per 100 meiosis on average. Thus if two regions of the genome are 10cMs apart, you would expect a recombination event between these two regions in 10 out of 100 meiosis. The genetic map distance between two genes therefore determines the frequency