Preparation of Crosslinked Enzyme Aggregates of a Thermostable Cyclodextrin Glucosyltransferase from Thermoanaerobacter Sp
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Bacteria Belonging to Pseudomonas Typographi Sp. Nov. from the Bark Beetle Ips Typographus Have Genomic Potential to Aid in the Host Ecology
insects Article Bacteria Belonging to Pseudomonas typographi sp. nov. from the Bark Beetle Ips typographus Have Genomic Potential to Aid in the Host Ecology Ezequiel Peral-Aranega 1,2 , Zaki Saati-Santamaría 1,2 , Miroslav Kolaˇrik 3,4, Raúl Rivas 1,2,5 and Paula García-Fraile 1,2,4,5,* 1 Microbiology and Genetics Department, University of Salamanca, 37007 Salamanca, Spain; [email protected] (E.P.-A.); [email protected] (Z.S.-S.); [email protected] (R.R.) 2 Spanish-Portuguese Institute for Agricultural Research (CIALE), 37185 Salamanca, Spain 3 Department of Botany, Faculty of Science, Charles University, Benátská 2, 128 01 Prague, Czech Republic; [email protected] 4 Laboratory of Fungal Genetics and Metabolism, Institute of Microbiology of the Academy of Sciences of the Czech Republic, 142 20 Prague, Czech Republic 5 Associated Research Unit of Plant-Microorganism Interaction, University of Salamanca-IRNASA-CSIC, 37008 Salamanca, Spain * Correspondence: [email protected] Received: 4 July 2020; Accepted: 1 September 2020; Published: 3 September 2020 Simple Summary: European Bark Beetle (Ips typographus) is a pest that affects dead and weakened spruce trees. Under certain environmental conditions, it has massive outbreaks, resulting in attacks of healthy trees, becoming a forest pest. It has been proposed that the bark beetle’s microbiome plays a key role in the insect’s ecology, providing nutrients, inhibiting pathogens, and degrading tree defense compounds, among other probable traits. During a study of bacterial associates from I. typographus, we isolated three strains identified as Pseudomonas from different beetle life stages. In this work, we aimed to reveal the taxonomic status of these bacterial strains and to sequence and annotate their genomes to mine possible traits related to a role within the bark beetle holobiont. -
Insulin in Insulin-Secreti
OPEN Rab2A is a pivotal switch protein that SUBJECT AREAS: promotes either secretion or MEMBRANE TRAFFICKING ER-associated degradation of (pro)insulin ORGANELLES in insulin-secreting cells Received 1 1,2 1 8 July 2014 Taichi Sugawara , Fumi Kano & Masayuki Murata Accepted 14 October 2014 1Department of Life Sciences, Graduate School of Arts and Sciences, The University of Tokyo, Tokyo 153-8902, Japan, 2PRESTO, Japan Science and Technology Agency, Saitama 332-0012, Japan. Published 7 November 2014 Rab2A, a small GTPase localizing to the endoplasmic reticulum (ER)-Golgi intermediate compartment (ERGIC), regulates COPI-dependent vesicular transport from the ERGIC. Rab2A knockdown inhibited glucose-stimulated insulin secretion and concomitantly enlarged the ERGIC in insulin-secreting cells. Large Correspondence and aggregates of polyubiquitinated proinsulin accumulated in the cytoplasmic vicinity of a unique large requests for materials spheroidal ERGIC, designated the LUb-ERGIC. Well-known components of ER-associated degradation should be addressed to (ERAD) also accumulated at the LUb-ERGIC, creating a suitable site for ERAD-mediated protein quality M.M. (mmurata@bio. control. Moreover, chronically high glucose levels, which induced the enlargement of the LUb-ERGIC and c.u-tokyo.ac.jp) ubiquitinated protein aggregates, impaired Rab2A activity by promoting dissociation from its effector, glyceraldehyde-3-phosphate dehydrogenase (GAPDH), in response to poly (ADP-ribosyl)ation of GAPDH. The inactivation of Rab2A relieved glucose-induced ER stress and inhibited ER stress-induced apoptosis. Collectively, these results suggest that Rab2A is a pivotal switch that controls whether insulin should be secreted or degraded at the LUb-ERGIC and Rab2A inactivation ensures alleviation of ER stress and cell survival under chronic glucotoxicity. -
Trehalose and Trehalose-Based Polymers for Environmentally Benign, Biocompatible and Bioactive Materials
Molecules 2008, 13, 1773-1816; DOI: 10.3390/molecules13081773 OPEN ACCESS molecules ISSN 1420-3049 www.mdpi.org/molecules Review Trehalose and Trehalose-based Polymers for Environmentally Benign, Biocompatible and Bioactive Materials Naozumi Teramoto 1, *, Navzer D. Sachinvala 2, † and Mitsuhiro Shibata 1 1 Department of Life and Environmental Sciences, Faculty of Engineering, Chiba Institute of Technology, 2-17-1 Tsudanuma, Narashino, Chiba 275-0016, Japan; E-mail: [email protected] 2 Retired, Southern Regional Research Center, USDA-ARS, New Orleans, LA, USA; Home: 2261 Brighton Place, Harvey, LA 70058; E-mail: [email protected] † Dedicated to Professor George Christensen, Department of Psychology, Winona State University, Winona, MN, USA. * Author to whom correspondence should be addressed; E-mail: [email protected]. Received: 13 July 2008 / Accepted: 11 August 2008 / Published: 21 August 2008 Abstract: Trehalose is a non-reducing disaccharide that is found in many organisms but not in mammals. This sugar plays important roles in cryptobiosis of selaginella mosses, tardigrades (water bears), and other animals which revive with water from a state of suspended animation induced by desiccation. The interesting properties of trehalose are due to its unique symmetrical low-energy structure, wherein two glucose units are bonded face-to-face by 1J1-glucoside links. The Hayashibara Co. Ltd., is credited for developing an inexpensive, environmentally benign and industrial-scale process for the enzymatic conversion of α-1,4-linked polyhexoses to α,α-D-trehalose, which made it easy to explore novel food, industrial, and medicinal uses for trehalose and its derivatives. -
Induced Structural Changes in a Multifunctional Sialyltransferase
Biochemistry 2006, 45, 2139-2148 2139 Cytidine 5′-Monophosphate (CMP)-Induced Structural Changes in a Multifunctional Sialyltransferase from Pasteurella multocida†,‡ Lisheng Ni,§ Mingchi Sun,§ Hai Yu,§ Harshal Chokhawala,§ Xi Chen,*,§ and Andrew J. Fisher*,§,| Department of Chemistry and the Section of Molecular and Cellular Biology, UniVersity of California, One Shields AVenue, DaVis, California 95616 ReceiVed NoVember 23, 2005; ReVised Manuscript ReceiVed December 19, 2005 ABSTRACT: Sialyltransferases catalyze reactions that transfer a sialic acid from CMP-sialic acid to an acceptor (a structure terminated with galactose, N-acetylgalactosamine, or sialic acid). They are key enzymes that catalyze the synthesis of sialic acid-containing oligosaccharides, polysaccharides, and glycoconjugates that play pivotal roles in many critical physiological and pathological processes. The structures of a truncated multifunctional Pasteurella multocida sialyltransferase (∆24PmST1), in the absence and presence of CMP, have been determined by X-ray crystallography at 1.65 and 2.0 Å resolutions, respectively. The ∆24PmST1 exists as a monomer in solution and in crystals. Different from the reported crystal structure of a bifunctional sialyltransferase CstII that has only one Rossmann domain, the overall structure of the ∆24PmST1 consists of two separate Rossmann nucleotide-binding domains. The ∆24PmST1 structure, thus, represents the first sialyltransferase structure that belongs to the glycosyltransferase-B (GT-B) structural group. Unlike all other known GT-B structures, however, there is no C-terminal extension that interacts with the N-terminal domain in the ∆24PmST1 structure. The CMP binding site is located in the deep cleft between the two Rossmann domains. Nevertheless, the CMP only forms interactions with residues in the C-terminal domain. -
(12) STANDARD PATENT (11) Application No. AU 2015215937 B2 (19) AUSTRALIAN PATENT OFFICE
(12) STANDARD PATENT (11) Application No. AU 2015215937 B2 (19) AUSTRALIAN PATENT OFFICE (54) Title Metabolically engineered organisms for the production of added value bio-products (51) International Patent Classification(s) C12N 15/52 (2006.01) C12P 19/26 (2006.01) C12P 19/18 (2006.01) C12P 19/30 (2006.01) (21) Application No: 2015215937 (22) Date of Filing: 2015.08.21 (43) Publication Date: 2015.09.10 (43) Publication Journal Date: 2015.09.10 (44) Accepted Journal Date: 2017.03.16 (62) Divisional of: 2011278315 (71) Applicant(s) Universiteit Gent (72) Inventor(s) MAERTENS, Jo;BEAUPREZ, Joeri;DE MEY, Marjan (74) Agent / Attorney Griffith Hack, GPO Box 3125, Brisbane, QLD, 4001, AU (56) Related Art Trinchera, M. et al., 'Dictyostelium cytosolic fucosyltransferase synthesizes H type 1 trisaccharide in vitro', FEBS Letters, 1996, Vol. 395, pages 68-72 GenBank accession no. AF279134, 6 May 2002 van der Wel, H. et al., 'A bifunctional diglycosyltransferase forms the Fuc#1,2Gal#1,3-disaccharide on Skpl in the cytoplasm of Dictyostelium', The Journal of Biological Chemistry, 2002, Vol. 277, No. 48, pages 46527-46534 WO 2010/070104 Al Abstract The present invention relates to genetically engineered organisms, especially microorganisms such as bacteria and yeasts, for the production of added value bio-products such as specialty saccharide, activated saccharide, nucleoside, glycoside, glycolipid or glycoprotein. More specifically, the present invention relates to host cells that are metabolically engineered so that they can produce said valuable specialty products in large quantities and at a high rate by bypassing classical technical problems that occur in biocatalytical or fermentative production processes. -
Synthesis of Fructooligosaccharides by Isla4, a Truncated Inulosucrase
Peña-Cardeña et al. BMC Biotechnology (2015) 15:2 DOI 10.1186/s12896-015-0116-1 RESEARCH ARTICLE Open Access Synthesis of Fructooligosaccharides by IslA4, a truncated inulosucrase from Leuconostoc citreum Arlen Peña-Cardeña, María Elena Rodríguez-Alegría, Clarita Olvera and Agustín López Munguía* Abstract Background: IslA4 is a truncated single domain protein derived from the inulosucrase IslA, which is a multidomain fructosyltransferase produced by Leuconostoc citreum. IslA4 can synthesize high molecular weight inulin from sucrose, with a residual sucrose hydrolytic activity. IslA4 has been reported to retain the product specificity of the multidomain enzyme. Results: Screening experiments to evaluate the influence of the reactions conditions, especially the sucrose and enzyme concentrations, on IslA4 product specificity revealed that high sucrose concentrations shifted the specificity of the reaction towards fructooligosaccharides (FOS) synthesis, which almost eliminated inulin synthesis and led to a considerable reduction in sucrose hydrolysis. Reactions with low IslA4 activity and a high sucrose activity allowed for high levels of FOS synthesis, where 70% sucrose was used for transfer reactions, with 65% corresponding to transfructosylation for the synthesis of FOS. Conclusions: Domain truncation together with the selection of the appropriate reaction conditions resulted in the synthesis of various FOS, which were produced as the main transferase products of inulosucrase (IslA4). These results therefore demonstrate that bacterial fructosyltransferase -
An 1,4-Α-Glucosyltransferase Defines a New Maltodextrin Catabolism Scheme In
bioRxiv preprint doi: https://doi.org/10.1101/2020.03.17.996314; this version posted March 18, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 An 1,4-α-glucosyltransferase defines a new maltodextrin catabolism scheme in 2 Lactobacillus acidophilus 3 4 Authors: Susan Andersena*, Marie S. Møllera*, Jens-Christian N. Poulsenb, Michael J. Pichlera, 5 Birte Svenssona, Yong Jun Gohc#, Leila Lo Leggiob#, Maher Abou Hachema# 6 7 *Equal contribution, SA has initiated the study together with MSM, who has performed the 8 final comprehensive phylogenetic analysis to conclude the work. 9 aDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Kgs. 10 Lyngby, Denmark 11 bDepartment of Chemistry, University of Copenhagen, Copenhagen, Denmark 12 cDepartment of Food, Bioprocessing and Nutrition Sciences, North Carolina State University, 13 Raleigh, North Carolina, United States 14 15 Running title: Maltodextrin metabolism in Lactobacillus acidophilus 16 #Adress correspondence to Maher Abou Hachem, e-mail: [email protected]; Leila Lo Leggio, 17 e-mail: [email protected], Yong Jun Goh, e-mail: [email protected]. 18 Key words: Carbohydrate metabolism, disproportionating enzyme, Lactobacillus, gut 19 microbiota, maltooligosaccharides, microbiota, oligosaccharide 1,4-α-glucanotransferase, 20 prebiotic, probiotic, starch 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.03.17.996314; this version posted March 18, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Ad-Glucose As A
Proc. Nati Acad. Sci. USA Vol. 79, pp. 3716-3719; June 1982 Biochemistry Catalytic mechanism of glycogen phosphorylase: Pyridoxal(5')diphospho(1)-a-D-glucose as a transition-state analogue (pyridoxal 5'-phosphate/pyridoxal 5'-diphosphate/glucosyl, transfer/phosphate-phosphate interaction) MITSURU TAKAGI, TOSHIO FUKUI*, AND SHOJI SHIMOMURA Institute of Scientific and Industrial Research, Osaka University, Suita, Osaka 565, Japan Communicated by Edmond H. Fischer, March 15, 1982 ABSTRACT Pyridoxal(5')diphospho(1)-a-D-glucose was used pearance of this spectrum and its replacement with one char- to reconstitute glycogen phosphorylase b (1,4-a-D-glucan:ortho- acteristic of pyridoxal, 5'-diphosphate (PLPP) bound. to the en- phosphate a-D-glucosyltransferase, EC 2.4.1.1) from rabbit mus- zyme. Therefore, glucose was released from the synthetic cle, replacing the natural pyridoxal 5'-phosphate coenzyme. In- coenzyme. cubation ofthe reconstituted enzyme alone resulted in the gradual This paper describes the results of the identification of pyr- cleavage ofthe synthetic cofactor to pyridoxal 5'-phosphate, which idoxal compounds produced from the enzyme-bound PLPP-a- caused slow reactivation of the enzyme. The addition of malto- Glc undervariousconditions as well as the fate ofthe pentaose or glycogen altered the mode of cleavage; the cofactor radioactive was rapidly decomposed to pyridoxal 5'-diphosphate. The radio- glucose released from the PLPP-a-['4C]Glc in the presence of active glucose moiety released from pyridoxal(5')diphospho(1)-a- glycogen. The glucose was recovered in the outer chain of gly- D-['4C]glucose was incorporated into the outer chain ofglycogen, cogen, bou'nd through an a-1,4-glucosidic linkage. -
Ep 3235907 A1
(19) TZZ¥ ¥Z_T (11) EP 3 235 907 A1 (12) EUROPEAN PATENT APPLICATION (43) Date of publication: (51) Int Cl.: 25.10.2017 Bulletin 2017/43 C12N 15/52 (2006.01) C12P 19/18 (2006.01) C12P 19/26 (2006.01) C12P 19/30 (2006.01) (21) Application number: 17169628.9 (22) Date of filing: 12.07.2011 (84) Designated Contracting States: • Beauprez, Joeri AL AT BE BG CH CY CZ DE DK EE ES FI FR GB 8450 Bredene (BE) GR HR HU IE IS IT LI LT LU LV MC MK MT NL NO • De Mey, Marjan PL PT RO RS SE SI SK SM TR 9000 Gent (BE) (30) Priority: 12.07.2010 EP 10169304 (74) Representative: De Clercq & Partners Edgard Gevaertdreef 10a (62) Document number(s) of the earlier application(s) in 9830 Sint-Martens-Latem (BE) accordance with Art. 76 EPC: 11739017.9 / 2 593 549 Remarks: This application was filed on 05.05.2017 as a (71) Applicant: Universiteit Gent divisional application to the application mentioned 9000 Gent (BE) under INID code 62. (72) Inventors: • Maertens, Jo 9000 Gent (BE) (54) METABOLICALLY ENGINEERED ORGANISMS FOR THE PRODUCTION OF ADDED VALUE BIO-PRODUCTS (57) The present invention relates to genetically en- cells that are metabolically engineered so that they can gineered organisms, especially microorganisms such as produce said valuable specialty products in large quan- bacteria and yeasts, for the production of added value tities and at a high rate by bypassing classical technical bio-products suchas specialty saccharide, activated sac- problems that occur in biocatalytical or fermentative pro- charide, nucleoside,glycoside, glycolipid or glycoprotein. -
The ALG10 Locus of Saccharomyces Cerevisiae Encodes the Α–1
View metadata, citation and similar papers at core.ac.uk brought to you by CORE Glycobiology vol. 8 no. 5 pp. 455–462, 1998 provided by RERO DOC Digital Library The ALG10 locus of Saccharomyces cerevisiae encodes the α–1,2 glucosyltransferase of the endoplasmic reticulum: the terminal glucose of the lipid-linked oligosaccharide is required for efficient N-linked glycosylation Patricie Burda and Markus Aebi1 ALG6 (Runge et al., 1984; Reiss et al., 1996) and ALG8 locus Mikrobiologisches Institut, ETH Zürich, CH-8092 Zürich, Switzerland (Runge and Robbins, 1986; Stagljar et al., 1994), each encoding a putative α-1,3 glucosyltransferase, affect the glucosylation steps of Received on September 19, 1997; revised on December 1, 1997; accepted on the lipid-linked oligosaccharide. The phenotype of mutations in December 6, 1997 these ALG loci, namely, hypoglycosylation of secreted proteins in vivo, as well as additional biochemical data show that glucosylation 1To whom correspondence should be addressed at: Mikrobiologisches Institut, ETH Zentrum, LFV E20, 8092 Zürich, Switzerland of the oligosaccharide is important for the affinity of the oligosaccharyltransferase towards the lipid-linked oligosaccharide The biosynthesis of the lipid-linked oligosaccharide substrate (Kornfeld and Kornfeld, 1985; Trimble and Verostek, 1995). Non- for N-linked protein glycosylation follows a highly conserved or partially glucosylated oligosaccharides can be transferred to pathway at the membrane of the endoplasmic reticulum. protein, albeit with a reduced efficiency. Removal of the three Based on the synthetic growth defect in combination with a terminal glucose residues by glucosidase I (Ray et al., 1991; reduced oligosaccharyltransferase activity (wbp1), we have Shailubhai et al., 1991; Kalz-Füller et al., 1995) and glucosidase identified alg10 mutant strains which accumulate lipid- II (Burns and Touster, 1982; Trombetta et al., 1996) are the first linked Glc2Man9GlcNAc2. -
The Invariant Residues in the Α-Amylase Family: Just the Catalytic Triad
Biologia, Bratislava, 58/6: 1127—1132, 2003 SHORT COMMUNICATION The invariant residues in the α-amylase family: just the catalytic triad Martin Machovič1 &ŠtefanJaneček1,2* 1Department of Biotechnologies, Faculty of Natural Sciences, University of Ss. Cyril and Methodius, J. Herdu 2,SK-91701 Trnava, Slovakia 2Institute of Molecular Biology, Slovak Academy of Sciences, Dúbravská cesta 21,SK-84551 Bratislava, Slovakia; phone: ++ 421 2 5930 7420,fax:++421 2 5930 7416, e-mail: [email protected] MACHOVIČ,M.&JANEČEK, Š., The invariant residues in the α-amylase family: just the catalytic triad. Biologia, Bratislava, 58: 1127—1132, 2003; ISSN 0006-3088. (Biologia). ISSN 1335-6399 (Biologia. Section Cellular and Molecular Biology). The α-amylase family is also known as the glycoside hydrolase clan H (GH- H) consisting of three glycoside hydrolase families GH-13, GH-70, and GH-77. Although the entire α-amylase family can be characterised by several well- conserved sequence regions, the number of the amino acid residues conserved totally invariantly throughout the family has been established in the last few years to be only 4. These were the three catalytic residues (two aspartates and one glutamate) plus the arginine in the position i-2 with respect to the cat- alytic nucleophile Asp located near the strand β4ofthe(β/α)8-barrel. The present protein bioinformatics study deals with the 4-α-glucanotransferase from Borrelia burgdorferi, a putative member of the GH-77. The sequence of this hypothetical protein, present in the complete genome sequence of the Lyme disease spirochete, possesses the otherwise invariant β4-strand Arg sub- stituted by lysine. -
Catalytic Promiscuity of O‑Glcnac Transferase Enables Unexpected Metabolic Engineering of Cytoplasmic Proteins with 2‑Azido-2- Deoxy-Glucose † ‡ † ‡ † † † † David L
Final version published as: Shen, D. L., Liu, T.-W., Zandberg, W., Clark, T., Eskandari, R., Alteen, M. G., Tan, H. Y., Zhu, Y., Cecioni, S., & Vocadlo, D. (2017). Catalytic Promiscuity of O-GlcNAc Transferase Enables Unexpected Metabolic Engineering of Cytoplasmic Proteins with 2-Azido-2-deoxy-glucose. ACS Chemical Biology, 12(1), 206–213. https://doi.org/10.1021/acschembio.6b00876 Catalytic Promiscuity of O‑GlcNAc Transferase Enables Unexpected Metabolic Engineering of Cytoplasmic Proteins with 2‑Azido-2- deoxy-glucose † ‡ † ‡ † † † † David L. Shen, , Ta-Wei Liu, , Wesley Zandberg, Tom Clark, Razieh Eskandari, Matthew G. Alteen, † † ‡ † † ‡ Hong Yee Tan, Yanping Zhu, , Samy Cecioni, and David Vocadlo*, , † Department of Chemistry, Simon Fraser University, Burnaby, British Columbia V5A 1S6, Canada ‡ Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, British Columbia V5A 1S6, Canada ABSTRACT: O-GlcNAc transferase (OGT) catalyzes the installation of N-acetylglucosamine (GlcNAc) O-linked to nucleocytoplasmic proteins (O-GlcNAc) within multicellular eukaryotes. OGT shows surprising tolerance for structural changes in the sugar component of its nucleotide sugar donor substrate, uridine diphosphate N-acetylglucosamine (UDP-GlcNAc). Here, we find that OGT uses UDP-glucose to install O-linked glucose (O-Glc) onto proteins only 25-fold less efficiently than O- GlcNAc. Spurred by this observation, we show that OGT transfers 2-azido-2-deoxy-D-glucose (GlcAz) in vitro from UDP-GlcAz to proteins. Further, feeding cells with per-O-acetyl GlcAz (AcGlcAz), in combination with inhibition or inducible knockout of OGT, shows OGT-dependent modification of nuclear and cytoplasmic proteins with O-GlcAz as detected using microscopy, immunoblot, and proteomics.