Cell Division
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Mobile Genetic Elements in Streptococci
Curr. Issues Mol. Biol. (2019) 32: 123-166. DOI: https://dx.doi.org/10.21775/cimb.032.123 Mobile Genetic Elements in Streptococci Miao Lu#, Tao Gong#, Anqi Zhang, Boyu Tang, Jiamin Chen, Zhong Zhang, Yuqing Li*, Xuedong Zhou* State Key Laboratory of Oral Diseases, National Clinical Research Center for Oral Diseases, West China Hospital of Stomatology, Sichuan University, Chengdu, PR China. #Miao Lu and Tao Gong contributed equally to this work. *Address correspondence to: [email protected], [email protected] Abstract Streptococci are a group of Gram-positive bacteria belonging to the family Streptococcaceae, which are responsible of multiple diseases. Some of these species can cause invasive infection that may result in life-threatening illness. Moreover, antibiotic-resistant bacteria are considerably increasing, thus imposing a global consideration. One of the main causes of this resistance is the horizontal gene transfer (HGT), associated to gene transfer agents including transposons, integrons, plasmids and bacteriophages. These agents, which are called mobile genetic elements (MGEs), encode proteins able to mediate DNA movements. This review briefly describes MGEs in streptococci, focusing on their structure and properties related to HGT and antibiotic resistance. caister.com/cimb 123 Curr. Issues Mol. Biol. (2019) Vol. 32 Mobile Genetic Elements Lu et al Introduction Streptococci are a group of Gram-positive bacteria widely distributed across human and animals. Unlike the Staphylococcus species, streptococci are catalase negative and are subclassified into the three subspecies alpha, beta and gamma according to the partial, complete or absent hemolysis induced, respectively. The beta hemolytic streptococci species are further classified by the cell wall carbohydrate composition (Lancefield, 1933) and according to human diseases in Lancefield groups A, B, C and G. -
Transposable Elements Drive Reorganisation of 3D Chromatin
bioRxiv preprint doi: https://doi.org/10.1101/523712; this version posted January 17, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Transposable elements drive reorganisation of 3D chromatin during early embryogenesis Kai Kruse1, Noelia Díaz1, §, Rocio Enriquez-Gasca1, §, Xavier Gaume2, 4, Maria-Elena Torres-Padilla2, 3 and Juan M. Vaquerizas1, * 1. Max Planck Institute for Molecular Biomedicine, Roentgenstrasse 20, 48149 Muenster, Germany. 2. Institute of Epigenetics and Stem Cells (IES), Helmholtz Zentrum München, Marchioninistraße 25, 81377 Munich, Germany. 3. Faculty of Biology, Ludwig Maximilians Universität, Großhaderner Str. 2, 82152 Planegg-Martinsried, Germany. 4. Present address: Cancer Research Center of Lyon, 28 Rue Laennec, Lyon 69008, France. §. These authors have contributed equally to this work. *. Correspondence to J.M.V. ([email protected], @vaquerizasjm) Keywords: Chromosome conformation capture; low-input Hi-C; early embryonic development; totipotency; transposable elements; MERVL; TAds; 2-cell embryo; 2-cell-like cells; zygotic genome activation; CAF-1; dux. Transposable elements are abundant genetic components of eukaryotic genomes with important regulatory features affecting transcription, splicing, and recombination, among others. Here we demonstrate that the Murine Endogenous Retroviral Element (MuERV-L/MERVL) family of transposable elements drives the 3D reorganisation of the genome in the early mouse embryo. By generating Hi-C data in 2-cell-like cells, we show that MERLV elements promote the formation of insulating domain boundaries through- out the genome in vivo and in vitro. -
Keystone Review Module B BIO.B.1.1 – Describe the Three Stages of the Cell Cycle: Interphase, Nuclear Division, Cytokinesis
Keystone Review Module B BIO.B.1.1 – Describe the three stages of the cell cycle: interphase, nuclear division, cytokinesis. ● Describe the events that occur during the cell cycle: interphase, nuclear division, and cytokinesis. ● Compare the processes and outcomes of mitotic and meiotic nuclear division. Which statement BEST describes the phase of the cell cycle shown? A. The cell is in prophase of mitosis because the number of chromosomes has doubled. B. The cell is in prophase I of meiosis because of the number of chromosomes has doubled. C. The cell is in telophase of mitosis because the cell is separating and contains two copies of each chromosome. D. The cell is in telophase of meiosis because the cell is separating and contains two copies of each chromosome. Answer - C A. Incorrect - The cell is not in prophase. This is obvious as the cell contains two nuclei, a condition which only occurs in telophase. B. Incorrect - The cell is not in prophase. This is obvious as the cell contains two nuclei, a condition which only occurs in telophase. C. Correct - The cell is in telophase, which can be seen from the two nuclei. Only telophase of mitosis includes two copies of each chromosome. D. Incorrect - The cell is in telophase, but in meiosis each cell contains only 1 copy of each chromosome. Mitosis and meiosis are processes by which animal and plant cells divide. Which statement best describes a difference between mitosis and meiosis? A. Meiosis is a multi-step process. B. Mitosis occurs only in eukaryotic cells. C. Meiosis is used in the repair of an organism. -
Review Cell Division from a Genetic Perspective
REVIEW CELL DIVISION FROM A GENETIC PERSPECTIVE LELAND H. HARTWELL From the Department of Genetics, University of Washington, Seattle, Washington 98195 Recently, a number of laboratories have begun to incubation at the restrictive condition for that study mutant cells that are defective in specific mutation, whereas mutants with defects in one of stages of the eukaryotic cell cycle. The long-range the continuously required functions will arrest at goals of this work are to identify the genes that the restrictive temperature with cells at a variety code for division-related proteins, to define the of positions in the cell cycle. roles that these gene products play and to investi- Classes of mutants may be distinguished from gate the hierarchies of order that assure their one another and the roles of their products delim- coordinated activity. It is my intent in this brief ited by determining the stage-specific event at review to discuss the strategies employed in this which they arrest. It is convenient to have a genetic approach and to enumerate some of the designation for the first landmark of the cell cycle new conclusions that have come to light. A recent that is blocked in a particular mutant, and I shall review on the genetics of meiosis (2) complements call it the diagnostic landmark for that mutant. this review on mitosis. Mutants of Saccharomyces cerevisiae have been identified that have diagnostic landmarks at spin- MUTANTS dle pole body (SPB) duplication, SPB separation, Mutations that inactivate gene products essential initiation of DNA synthesis, DNA replication, for division would be lethal. -
Proper Division Plane Orientation and Mitotic Progression Together Allow Normal Growth of Maize
Proper division plane orientation and mitotic progression together allow normal growth of maize Pablo Martineza,b, Anding Luoc, Anne Sylvesterc, and Carolyn G. Rasmussena,1 aDepartment of Botany and Plant Sciences, Center for Plant Cell Biology, University of California, Riverside, CA 92521; bBiochemistry and Molecular Biology Graduate Program, University of California, Riverside, CA 92521; and cDepartment of Molecular Biology, University of Wyoming, Laramie, WY 82071 Edited by Elliot M. Meyerowitz, Howard Hughes Medical Institute and California Institute of Technology, Pasadena, CA, and approved January 17, 2017 (received for review November 23, 2016) How growth, microtubule dynamics, and cell-cycle progression are dynamics during mitosis. Similar to mutants with defects in both coordinated is one of the unsolved mysteries of cell biology. A interphase and mitotic microtubule dynamics, maize tan1 mu- maize mutant, tangled1, with known defects in growth and proper tants have short stature and misoriented cell patterns (23), as do division plane orientation, and a recently characterized cell-cycle mutants of TAN1-interacting partners phragmoplast orienting delay identified by time-lapse imaging, was used to clarify the re- kinesin-1;2 (24). TAN1 is similar to the microtubule binding lationship between growth, cell cycle, and proper division plane domain of adenomapolyposis coli (22), a multifunctional protein orientation. The tangled1 mutant was fully rescued by introduction that promotes proper division orientation in animal cells (25–27). of cortical division site localized TANGLED1-YFP. A CYCLIN1B de- In Arabidopsis thaliana, AtTAN1 fused to yellow fluorescent struction box was fused to TANGLED1-YFP to generate a line that protein (YFP) was the first identified positive marker of the cor- mostly rescued the division plane defect but still showed cell-cycle tical division site, remaining at the site after PPB disassembly (20). -
Cell Division and Cycle
Name: _______________________ Date:_____________ Period_________ Subject: ________ Cell Division and Cycle Read the phase to answer the questions 1 through 10. Living organisms are constantly making new cells. They make new cells in order to grow and also to replace old dead cells. The process by which new cells are made is called cell division. Cell division is occurring all the time. Around two trillion cell divisions occur in the average human body every day! Types of Cell Division There are three main types of cell division: binary fission, mitosis, and meiosis. Binary fission is used by simple organisms like bacteria. More complex organisms gain new cells by either mitosis or meiosis. Mitosis Mitosis is used when a cell needs to be replicated into exact copies of itself. Everything in the cell is duplicated. The two new cells have the same DNA, functions, and genetic code. The original cell is called the mother cell and the two new cells are called daughter cells. The full process, or cycle, of mitosis is described in more detail below. Examples of cells that are produced through mitosis include cells in the human body for the skin, blood, and muscles. Cell Cycle for Mitosis Cells go through different phases called the cell cycle. The "normal" state of a cell is called the "interphase". The genetic material is duplicated during the interphase stage of the cell. When a cell gets the signal that it is to duplicate, it will enter the first state of mitosis called the "prophase". Prophase - During this phase the chromatin condenses into chromosomes and the nuclear membrane and nucleolus break down. -
Mitosis Vs. Meiosis
Mitosis vs. Meiosis In order for organisms to continue growing and/or replace cells that are dead or beyond repair, cells must replicate, or make identical copies of themselves. In order to do this and maintain the proper number of chromosomes, the cells of eukaryotes must undergo mitosis to divide up their DNA. The dividing of the DNA ensures that both the “old” cell (parent cell) and the “new” cells (daughter cells) have the same genetic makeup and both will be diploid, or containing the same number of chromosomes as the parent cell. For reproduction of an organism to occur, the original parent cell will undergo Meiosis to create 4 new daughter cells with a slightly different genetic makeup in order to ensure genetic diversity when fertilization occurs. The four daughter cells will be haploid, or containing half the number of chromosomes as the parent cell. The difference between the two processes is that mitosis occurs in non-reproductive cells, or somatic cells, and meiosis occurs in the cells that participate in sexual reproduction, or germ cells. The Somatic Cell Cycle (Mitosis) The somatic cell cycle consists of 3 phases: interphase, m phase, and cytokinesis. 1. Interphase: Interphase is considered the non-dividing phase of the cell cycle. It is not a part of the actual process of mitosis, but it readies the cell for mitosis. It is made up of 3 sub-phases: • G1 Phase: In G1, the cell is growing. In most organisms, the majority of the cell’s life span is spent in G1. • S Phase: In each human somatic cell, there are 23 pairs of chromosomes; one chromosome comes from the mother and one comes from the father. -
The Involvement of Ubiquitination Machinery in Cell Cycle Regulation and Cancer Progression
International Journal of Molecular Sciences Review The Involvement of Ubiquitination Machinery in Cell Cycle Regulation and Cancer Progression Tingting Zou and Zhenghong Lin * School of Life Sciences, Chongqing University, Chongqing 401331, China; [email protected] * Correspondence: [email protected] Abstract: The cell cycle is a collection of events by which cellular components such as genetic materials and cytoplasmic components are accurately divided into two daughter cells. The cell cycle transition is primarily driven by the activation of cyclin-dependent kinases (CDKs), which activities are regulated by the ubiquitin-mediated proteolysis of key regulators such as cyclins, CDK inhibitors (CKIs), other kinases and phosphatases. Thus, the ubiquitin-proteasome system (UPS) plays a pivotal role in the regulation of the cell cycle progression via recognition, interaction, and ubiquitination or deubiquitination of key proteins. The illegitimate degradation of tumor suppressor or abnormally high accumulation of oncoproteins often results in deregulation of cell proliferation, genomic instability, and cancer occurrence. In this review, we demonstrate the diversity and complexity of the regulation of UPS machinery of the cell cycle. A profound understanding of the ubiquitination machinery will provide new insights into the regulation of the cell cycle transition, cancer treatment, and the development of anti-cancer drugs. Keywords: cell cycle regulation; CDKs; cyclins; CKIs; UPS; E3 ubiquitin ligases; Deubiquitinases (DUBs) Citation: Zou, T.; Lin, Z. The Involvement of Ubiquitination Machinery in Cell Cycle Regulation and Cancer Progression. 1. Introduction Int. J. Mol. Sci. 2021, 22, 5754. https://doi.org/10.3390/ijms22115754 The cell cycle is a ubiquitous, complex, and highly regulated process that is involved in the sequential events during which a cell duplicates its genetic materials, grows, and di- Academic Editors: Kwang-Hyun Bae vides into two daughter cells. -
Cell Division- Ch 5
Cell Division- Mitosis and Meiosis When do cells divide? Cell size . One of most important factors affecting size of the cell is size of cell membrane . Cell must remain relatively small to survive (why?) – Cell membrane has to be big enough to take in nutrients and eliminate wastes – As cells get bigger, the volume increases faster than the surface area – Small cells have a larger surface area to volume ratio than larger cells to help with nutrient intake and waste elimination . When a cell reaches its max size, the nucleus starts cell division: called MITOSIS or MEIOSIS Mitosis . General Information – Occurs in somatic (body) cells ONLY!! – Nickname: called “normal” cell division – Produces somatic cells only . Background Info – Starts with somatic cell in DIPLOID (2n) state . Cell contains homologous chromosomes- chromosomes that control the same traits but not necessarily in the same way . 1 set from mom and 1 set from dad – Ends in diploid (2n) state as SOMATIC cells – Goes through one set of divisions – Start with 1 cell and end with 2 cells Mitosis (cont.) . Accounts for three essential life processes – Growth . Result of cell producing new cells . Develop specialized shapes/functions in a process called differentiation . Rate of cell division controlled by GH (Growth Hormone) which is produced in the pituitary gland . Ex. Nerve cell, intestinal cell, etc. – Repair . Cell regenerates at the site of injury . Ex. Skin (replaced every 28 days), blood vessels, bone Mitosis (cont.) – Reproduction . Asexual – Offspring produced by only one parent – Produce offspring that are genetically identical – MITOSIS – Ex. Bacteria, fungi, certain plants and animals . -
Cell Growth and Reproduction Lesson 6.2: Chromosomes and DNA Replication
Chapter 6: Cell Growth and Reproduction Lesson 6.2: Chromosomes and DNA Replication Cell reproduction involves a series of steps that always begin with the processes of interphase. During interphase the cell’s genetic information which is stored in its nucleus in the form of chromatin, composed of both mitotic and interphase chromosomes molecules of protein complexes and DNA strands that are loosely coiled winds tightly to be replicated. It is estimated that the DNA in human cells consists of approximately three billion nucleotides. If a DNA molecule was stretched out it would measure over 20 miles in length and all of it is stored in the microscopic nuclei of human cells. This lesson will help you to understand how such an enormous amount of DNA is coiled and packed in a complicated yet organized manner. During cell reproduction as a cell gets ready to divide the DNA coils even more into tightly compact structures. Lesson Objectives • Describe the coiled structure of chromosomes. • Understand that chromosomes are coiled structures made of DNA and proteins. They form after DNA replicates and are the form in which the genetic material goes through cell division. • Discover that DNA replication is semi-conservative; half of the parent DNA molecule is conserved in each of the two daughter DNA molecules. • Outline discoveries that led to knowledge of DNA’s structure and function. • Examine the processes of DNA replication. Vocabulary • centromere • double helix • Chargaff’s rules • histones • chromatid • nucleosomes • chromatin • semi-conservative DNA replication • chromosome • sister chromatids • DNA replication • transformation Introduction In eukaryotic cells, the nucleus divides before the cell itself divides. -
The Obscure World of Integrative and Mobilizable Elements Gérard Guédon, Virginie Libante, Charles Coluzzi, Sophie Payot-Lacroix, Nathalie Leblond-Bourget
The obscure world of integrative and mobilizable elements Gérard Guédon, Virginie Libante, Charles Coluzzi, Sophie Payot-Lacroix, Nathalie Leblond-Bourget To cite this version: Gérard Guédon, Virginie Libante, Charles Coluzzi, Sophie Payot-Lacroix, Nathalie Leblond-Bourget. The obscure world of integrative and mobilizable elements: Highly widespread elements that pirate bacterial conjugative systems. Genes, MDPI, 2017, 8 (11), pp.337. 10.3390/genes8110337. hal- 01686871 HAL Id: hal-01686871 https://hal.archives-ouvertes.fr/hal-01686871 Submitted on 26 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License G C A T T A C G G C A T genes Review The Obscure World of Integrative and Mobilizable Elements, Highly Widespread Elements that Pirate Bacterial Conjugative Systems Gérard Guédon *, Virginie Libante, Charles Coluzzi, Sophie Payot and Nathalie Leblond-Bourget * ID DynAMic, Université de Lorraine, INRA, 54506 Vandœuvre-lès-Nancy, France; [email protected] (V.L.); [email protected] (C.C.); [email protected] (S.P.) * Correspondence: [email protected] (G.G.); [email protected] (N.L.-B.); Tel.: +33-037-274-5142 (G.G.); +33-037-274-5146 (N.L.-B.) Received: 12 October 2017; Accepted: 15 November 2017; Published: 22 November 2017 Abstract: Conjugation is a key mechanism of bacterial evolution that involves mobile genetic elements. -
U6-Life-Cycle-Background.Pdf
UNIT 6: LIFE CYCLE CORAL REEF ECOLOGY CURRICULUM This unit is part of the Coral Reef Ecology Curriculum that was developed by the Education Department of the Khaled bin Sultan Living Oceans Foundation. It has been designed for secondary school students, but can be adapted for other uses. The entire curriculum can be found online at lof.org/CoralReefCurriculum. Author and Design/Layout: Amy Heemsoth, Director of Education Editorial assistance provided by: Andrew Bruckner, Ken Marks, Melinda Campbell, Alexandra Dempsey, and Liz Rauer Thompson Illustrations by: Amy Heemsoth Cover Photo: ©Michele Westmorland/iLCP ©2014 Khaled bin Sultan Living Oceans Foundation. All rights reserved. Unless otherwise noted, photos are property of the Khaled bin Sultan Living Oceans Foundation. The Khaled bin Sultan Living Oceans Foundation and authors disclaim any liability for injury or damage related to the use of this curriculum. These materials may be reproduced for education purposes. When using any of the materials from this curriculum, please include the following attribution: Khaled bin Sultan Living Oceans Foundation Coral Reef Ecology Curriculum www.lof.org The Khaled bin Sultan Living Oceans Foundation (KSLOF) was incorporated in California as a 501(c)(3), public benefit, Private Operating Foundation in September 2000. The Living Oceans Foundation is dedicated to providing science-based solutions to protect and restore ocean health through research, outreach, and education. The educational goals of the Khaled bin Sultan Living Oceans Foundation and