Upregulation of Thioredoxin Reductase 1 in Human Oral Squamous Cell Carcinoma

Total Page:16

File Type:pdf, Size:1020Kb

Upregulation of Thioredoxin Reductase 1 in Human Oral Squamous Cell Carcinoma 637-644.qxd 19/1/2011 09:58 Ì ™ÂÏ›‰·637 ONCOLOGY REPORTS 25: 637-644, 2011 637 Upregulation of thioredoxin reductase 1 in human oral squamous cell carcinoma SHUNICHIRO IWASAWA1, YUKIO YAMANO2, YUICHI TAKIGUCHI1, HIDEKI TANZAWA2,3, KOICHIRO TATSUMI1 and KATSUHIRO UZAWA2,3 Departments of 1Respirology, and 2Clinical Molecular Biology, Graduate School of Medicine, Chiba University; 3Division of Dentistry and Oral-Maxillofacial Surgery, Chiba University Hospital, 1-8-1 Inohana, Chuo-ku, Chiba 260-8670, Japan Received September 3, 2010; Accepted October 29, 2010 DOI: 10.3892/or.2010.1131 Abstract. Thioredoxin reductase 1 (TrxR1) catalyzes the nico- advances in surgical and radiation therapies in recent decades, tinamide adenine dinucleotide phosphate-dependent reduction patients diagnosed with stages I and II have a relatively of oxidized thioredoxin (Trx). Trx, which is over-expressed in good prognosis. However, patients with stages III and IV, many human tumors, is a selenocysteine-containing protein which account for more than two-thirds of cases, have a high associated with cell proliferation and apoptosis inhibition. recurrence rate at regional and distal sites of metastasis This selenium-containing redox system regulates the activity (6,7). The resulting survival rates of all patients with OSCC of various enzymes and counteracts oxidative stress in cells remain poor. To improve the prognosis, strategies have such as hypoxia and cytotoxic agents. Consequently, TrxR1 been developed to integrate systemic chemotherapy into the could play an important role in tumor progression and resis- perioperative period. Moreover, molecular targeted therapy tance to chemotherapy due to its anti-apoptotic functions. To recently has been extensively investigated as a single modality characterize cancer-related gene expression changes in oral and in combination with cytotoxic treatments (8). Although squamous cell carcinomas (OSCC), we compared the gene these developments have significantly improved patient out- expression profiles in OSCC primary tumors with patient- comes, the 5-year survival rates are less than 50% (9). In matched normal oral epithelium. Microarray analysis showed addition, the mechanisms behind tumor progression of TrxR1 upregulation in primary tumors. Gene ontology analysis OSCC are known to a limited extent, indicating a clear need showed highly significant cancer-related function. The TrxR1 for comprehensive knowledge leading to more specific and expression examined by immunohistochemistry was correlated effective molecular target. with regional lymph node metastasis (P<0.05) and the clinical Microarray technology facilitates simultaneous evaluation stages of 50 patients (P<0.01). Overexpression of TrxR1 of tens of thousands of genes within a specimen. The results could contribute to cancer progression and might be a potential of microarray analysis provide researchers with high-through- molecular marker for therapy. put screening to study the roles played by specific genes in cancer development and progression. Previous studies have Introduction identified a number of novel genes with altered expression in OSCC (10,11); however, these studies have not yet Head and neck squamous cell carcinoma (HNSCC) is one of elucidated the role of these genes in a regulatory network of the leading malignancies and major causes of morbidity and tumor progression. We performed microarray analysis using mortality (1-3). Oral cancer is the most common cancer of high-density Affymetrix Human Genome-U133A plus 2.0 HNSCC. The most frequent type of oral cancer is squamous GeneChip arrays containing 54,675 probe sets (Affymetrix, cell carcinoma (OSCC) that accounts for more than 90% Santa Clara, CA) to compare gene expression patterns among of all oral malignancies (4). The number of OSCC cases OSCC primary tumors and patient-matched normal oral epi- occurring worldwide annually exceeds 300,000 (1,5). With thelium. We also adopted a computational tool, Ingenuity path- way analysis (IPA) software (Ingenuity Systems, Mountain _________________________________________ View, CA), to identify regulatory networks of differentially expressed genes related to OSCC. In the current study, we analyzed the gene expression Correspondence to: Dr Katsuhiro Uzawa, Department of profiles of OSCC using microarray technology in combination Clinical Molecular Biology, Graduate School of Medicine, Chiba University, 1-8-1 Inohana, Chuo-ku, Chiba 260-8670, Japan with network and gene ontology by IPA to identify networks E-mail: [email protected] of interacting genes and other functional groups. We also verified experimentally that the selenocysteine-containing Key words: thioredoxin reductase 1, oral squamous cell carci- redox protein, thioredoxin reductase 1 (TrxR1), is upregulated noma, pathway analysis, microarray analysis, qRT-PCR, immuno- in OSCC. In addition, we evaluated the correlation between histochemistry TrxR1 expression and clinicopathological parameters to explore the therapeutic potential of TrxR1. 637-644.qxd 19/1/2011 09:58 Ì ™ÂÏ›‰·638 638 IWASAWA et al: THIOREDOXIN REDUCTASE 1 IN ORAL SQUAMOUS CELL CARCINOMA Materials and methods Software 1.1 (Affymetrix) and GeneSpring 6.1 (Silicon Genetics, Redwood City, CA). Fold changes were calculated Tissue specimens and cell lines. Tumors and patient- by comparing transcripts between OSCC primary tumors with matched normal epithelial specimens were obtained during patient-matched normal oral epithelium. surgical resection at Chiba University Hospital after the study patients provided informed consent for a protocol mRNA extraction. mRNA was extracted when the cells reviewed and approved by the institutional review board of reached 80-90% confluence; they were washed twice with Chiba University. The resected tissues were divided; one part phosphate-buffered saline (PBS), scraped into a tube, and was frozen immediately after removal of the surrounding centrifuged briefly. Total RNA was extracted using TRIzol normal tissues and stored at -80˚C until protein isolation, and Reagent (Invitrogen Life Technologies) according to the the second part was fixed in 10% buffered formaldehyde manufacturer's instructions. The extracted RNA samples solution for pathological diagnosis and immunohistochemical were stored separately at -80˚C until use. staining. The Department of Pathology, Chiba University Hospital, performed histopathological diagnosis of each neo- mRNA expression analysis. Real-time quantitative reverse plastic tissue according to the World Health Organization transcriptase-polymerase chain reaction (qRT-PCR) was criteria. Clinicopathological staging was determined by the performed to evaluate the expression level of TrxR1 mRNA TNM classification of the International Union against Cancer. in the OSCC-derived cell lines (HSC-2, HSC-3, HSC-4, All patients had histologically confirmed SCC, and tumor KON, H1 and Sa3) and HNOKs. Primary tumors and paired samples were checked to ensure that tumor tissue was present specimens of normal oral tissues from 50 patients also were in more than 80% of the specimens. The OSCC-derived cell evaluated. qRT-PCR was performed with a single method lines used in this study were HSC-2, HSC-3, HSC-4, KON using a LightCycler FastStart DNA Master SYBR-Green 1 (Human Science Research Resources Bank, Osaka, Japan), Kit (Roche Diagnostics GmbH, Mannheim, Germany), H1, and Sa3 (provided by Dr Shigeyuki Fujita at Wakayama according to the procedure provided by the manufacturer. The Medical University, Wakayama, Japan). All OSCC-derived cell primer sequences used to analyze TrxR1 mRNA expression lines were grown in Dulbecco's modified Eagle's medium/F-12 were forward: 5'-GTTGCCAAGACTGCAAACCAC-3' and HAM (Sigma-Aldrich Co., St. Louis, MO) supplemented with reverse: 5'-CCCTGCCAAATGTCAGCTTC-3'. The sequence 10% fetal bovine serum (Sigma) and 50 units/ml penicillin of specific primers was checked before use to avoid and streptomycin (Sigma). Healthy oral gingival specimens amplification of genomic DNA or pseudogenes by Primer3 were collected from 27- to 86-year old patients at Chiba program (available at http://www-genome.wi.mit.edu/cgi- University Hospital. Five primary independent HNOKs were bin/primer/primer3_www.cgi). Amplified products were cultured and maintained in defined keratinocyte-SFM (Gibco- analyzed by 3% agarose gel electrophoresis to ascertain size BRL, Gaithusberg, Germany) (12). and purity. The PCR reactions using the LightCycler (Roche) apparatus were carried out in a final volume of 20 μl of a Affymetrix GeneChip hybridization. Double-stranded cDNA reaction mixture consisting of 2 μl of FirstStart DNA Master was synthesized from 20 μg of total RNA using the Superscript SYBR-Green I mix, 3 mM MgCl2, and 0.2 μl of the primers, Choice system (Invitrogen Life Technologies, Carlsbad, according to the manufacturer's instructions. The reaction CA, USA). After phenol/chloroform extraction and ethanol mixture then was loaded into glass capillary tubes and precipitation, a biotin-labeled in vitro transcription reaction subjected to an initial denaturation at 95˚C for 10 min, was carried out using the cDNA template (Enzo Bioarray, followed by 45 rounds of amplification at 95˚C (10 sec) for Farmingdale, NY). cRNA (7 μg) was fragmented according denaturation, 63˚C (10 sec) for annealing, and 72˚C for to Affymetrix protocols and added to the recommended extension, with a temperature slope of 20˚C/sec, performed hybridization mixture. Expression profiles were created using
Recommended publications
  • Cellular and Synaptic Network Defects in Autism
    Cellular and synaptic network defects in autism The MIT Faculty has made this article openly available. Please share how this access benefits you. Your story matters. Citation Peca, Joao, and Guoping Feng. “Cellular and Synaptic Network Defects in Autism.” Current Opinion in Neurobiology 22, no. 5 (October 2012): 866–872. As Published http://dx.doi.org/10.1016/j.conb.2012.02.015 Publisher Elsevier Version Author's final manuscript Citable link http://hdl.handle.net/1721.1/102179 Terms of Use Creative Commons Attribution-Noncommercial-NoDerivatives Detailed Terms http://creativecommons.org/licenses/by-nc-nd/4.0/ NIH Public Access Author Manuscript Curr Opin Neurobiol. Author manuscript; available in PMC 2013 October 01. Published in final edited form as: Curr Opin Neurobiol. 2012 October ; 22(5): 866–872. doi:10.1016/j.conb.2012.02.015. Cellular and synaptic network defects in autism João Peça1 and Guoping Feng1,2 $watermark-text1McGovern $watermark-text Institute $watermark-text for Brain Research, Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, USA 2Stanley Center for Psychiatric Research, Broad Institute, Cambridge, MA 02142, USA Abstract Many candidate genes are now thought to confer susceptibility to autism spectrum disorder (ASD). Here we review four interrelated complexes, each composed of multiple families of genes that functionally coalesce on common cellular pathways. We illustrate a common thread in the organization of glutamatergic synapses and suggest a link between genes involved in Tuberous Sclerosis Complex, Fragile X syndrome, Angelman syndrome and several synaptic ASD candidate genes. When viewed in this context, progress in deciphering the molecular architecture of cellular protein-protein interactions together with the unraveling of synaptic dysfunction in neural networks may prove pivotal to advancing our understanding of ASDs.
    [Show full text]
  • S100B Promotes Glioma Growth Through Chemoattraction of Myeloid-Derived Macrophages
    Published OnlineFirst May 29, 2013; DOI: 10.1158/1078-0432.CCR-12-3725 Clinical Cancer Human Cancer Biology Research S100B Promotes Glioma Growth through Chemoattraction of Myeloid-Derived Macrophages Huaqing Wang1, Leying Zhang5, Ian Y. Zhang5, Xuebo Chen2, Anna Da Fonseca8, Shihua Wu3, Hui Ren2, Sam Badie5, Sam Sadeghi5, Mao Ouyang4, Charles D. Warden6, and Behnam Badie5,7 Abstract þ Purpose: S100B is member of a multigenic family of Ca2 -binding proteins, which is overexpressed by gliomas. Recently, we showed that low concentrations of S100B attenuated microglia activation through the induction of Stat3. We hypothesized that overexpression of S100B in gliomas could promote tumor growth by modulating the activity of tumor-associated macrophages (TAM). Experimental Design: We stably transfected GL261 glioma cell lines with constructs that overexpressed (S100Bhigh) or underexpressed (S100Blow) S100B and compared their growth characteristics to intracranial wild-type (S100Bwt) tumors. Results: Downregulation of S100B in gliomas had no impact on cell division in vitro but abrogated tumor growth in vivo. Interestingly, compared to S100Blow tumors, S100Bwt and S100Bhigh intracranial gliomas exhi- bited higher infiltration of TAMs, stronger inflammatory cytokine expression, and increased vascularity. To identify the potential mechanisms involved, the expression of the S100B receptor, receptor for advanced glycation end products (RAGE), was evaluated in gliomas. Although S100B expression induced RAGE in vivo, RAGE ablation in mice did not significantly inhibit TAM infiltration into gliomas, suggesting that other pathways were involved in this process. To evaluate other mechanisms responsible for TAM chemoattraction, we then examined chemokine pathways and found that C-C motif ligand 2 (CCL2) was upregulated in S100Bhigh tumors.
    [Show full text]
  • Protein Interaction Network of Alternatively Spliced Isoforms from Brain Links Genetic Risk Factors for Autism
    ARTICLE Received 24 Aug 2013 | Accepted 14 Mar 2014 | Published 11 Apr 2014 DOI: 10.1038/ncomms4650 OPEN Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism Roser Corominas1,*, Xinping Yang2,3,*, Guan Ning Lin1,*, Shuli Kang1,*, Yun Shen2,3, Lila Ghamsari2,3,w, Martin Broly2,3, Maria Rodriguez2,3, Stanley Tam2,3, Shelly A. Trigg2,3,w, Changyu Fan2,3, Song Yi2,3, Murat Tasan4, Irma Lemmens5, Xingyan Kuang6, Nan Zhao6, Dheeraj Malhotra7, Jacob J. Michaelson7,w, Vladimir Vacic8, Michael A. Calderwood2,3, Frederick P. Roth2,3,4, Jan Tavernier5, Steve Horvath9, Kourosh Salehi-Ashtiani2,3,w, Dmitry Korkin6, Jonathan Sebat7, David E. Hill2,3, Tong Hao2,3, Marc Vidal2,3 & Lilia M. Iakoucheva1 Increased risk for autism spectrum disorders (ASD) is attributed to hundreds of genetic loci. The convergence of ASD variants have been investigated using various approaches, including protein interactions extracted from the published literature. However, these datasets are frequently incomplete, carry biases and are limited to interactions of a single splicing isoform, which may not be expressed in the disease-relevant tissue. Here we introduce a new interactome mapping approach by experimentally identifying interactions between brain-expressed alternatively spliced variants of ASD risk factors. The Autism Spliceform Interaction Network reveals that almost half of the detected interactions and about 30% of the newly identified interacting partners represent contribution from splicing variants, emphasizing the importance of isoform networks. Isoform interactions greatly contribute to establishing direct physical connections between proteins from the de novo autism CNVs. Our findings demonstrate the critical role of spliceform networks for translating genetic knowledge into a better understanding of human diseases.
    [Show full text]
  • Ahnaks Are a Class of Giant Propeller-Like Proteins That Associate with Calcium Channel Proteins of Cardiomyocytes and Other Cells
    The AHNAKs are a class of giant propeller-like proteins that associate with calcium channel proteins of cardiomyocytes and other cells Akihiko Komuro*, Yutaka Masuda*, Koichi Kobayashi, Roger Babbitt, Murat Gunel, Richard A. Flavell, and Vincent T. Marchesi† Departments of Pathology and Immunobiology, Boyer Center for Molecular Medicine, Yale University School of Medicine, New Haven, CT 06510 Contributed by Vincent T. Marchesi, December 31, 2003 To explore the function of the giant AHNAK molecule, first de- mechanisms, one operating at the cell surface in collaboration with scribed in 1992 [Shtivelman, E., Cohen, F. E. & Bishop, J. M. (1992) calcium channels, and the second, PLC activation, which is a process Proc. Natl. Acad. Sci. USA 89, 5472–5476], we created AHNAK null that could potentially take place at multiple points throughout the mice by homologous recombination. Homozygous knockouts cell. showed no obvious phenotype, but revealed instead a second The arrangement of channel proteins at the cell surface is AHNAK-like molecule, provisionally designated AHNAK2. Like the believed to be controlled by multidomain polypeptides known as original AHNAK, AHNAK2 is a 600-kDa protein composed of a large scaffolding proteins that link together activated channels at specific number of highly conserved repeat segments. Structural predic- points on the membrane surface. Scaffolding proteins also coordi- tions suggest that the repeat segments of both AHNAKs may have nate the activities of multienzyme complexes by physically linking as their basic framework a series of linked, antiparallel ␤-strands them together, and as in the case with AHNAK, they are often similar to those found in ␤-propeller proteins.
    [Show full text]
  • A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
    Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated.
    [Show full text]
  • Glial Protein S100B Modulates Long-Term Neuronal Synaptic Plasticity
    Glial protein S100B modulates long-term neuronal synaptic plasticity Hiroshi Nishiyama*†, Thomas Kno¨ pfel†, Shogo Endo‡, and Shigeyoshi Itohara*§ *Laboratories for Behavioral Genetics and †Neuronal Circuit Dynamics, and ‡Neuronal Circuit Mechanisms Research Group, Brain Science Institute (BSI), Institute of Physical and Chemical Research (RIKEN), 2-1 Hirosawa, Wako-shi, Saitama 351-0198, Japan Communicated by Richard F. Thompson, University of Southern California, Los Angeles, CA, January 11, 2002 (received for review August 1, 2001) Glial cells are traditionally regarded as elements for structural subject of debate (1). Transgenic mice overexpressing human support and ionic homeostasis, but have recently attracted atten- S100B exhibit impaired hippocampal LTP and spatial learning tion as putative integral elements of the machinery involved in (11). Transgenic mice overexpressing S100B might not be ap- synaptic transmission and plasticity. Here, we demonstrate that propriate for evaluating the physiological roles of S100B, how- calcium-binding protein S100B, which is synthesized in consider- ever, because overexpression of S100B partly mimics patholog- able amounts in astrocytes (a major glial cell subtype), modulates ical conditions in some neuronal diseases, such as Down’s long-term synaptic plasticity. Mutant mice devoid of S100B devel- syndrome and Alzheimer’s disease (12, 13). The constitutive oped normally and had no detectable abnormalities in the cyto- overexpression of S100B might cause chronic neuronal damage architecture of the brain. These mutant mice, however, had (14, 15). Thus, there is no clear consensus regarding the signif- strengthened synaptic plasticity as identified by enhanced long- icance of this glial protein in neuronal synaptic plasticity. term potentiation (LTP) in the hippocampal CA1 region.
    [Show full text]
  • Rage (Receptor for Advanced Glycation End Products) in Melanoma
    RAGE (RECEPTOR FOR ADVANCED GLYCATION END PRODUCTS) IN MELANOMA PROGRESSION A Dissertation Submitted to the Graduate Faculty of the North Dakota State University of Agriculture and Applied Science By Varsha Meghnani In Partial Fulfillment for the Degree of DOCTOR OF PHILOSOPHY Major Department: Pharmaceutical Sciences May 2014 Fargo, North Dakota North Dakota State University Graduate School Title RAGE (RECEPTOR FOR ADVANCED GLYCATION END PRODUCTS) IN MELANOMA PROGRESSION By VARSHA MEGHNANI The Supervisory Committee certifies that this disquisition complies with North Dakota State University’s regulations and meets the accepted standards for the degree of DOCTOR OF PHILOSOPHY SUPERVISORY COMMITTEE: ESTELLE LECLERC Chair BIN GUO STEPHEN O’ROURKE JANE SCHUH Approved: 5/22/2014 JAGDISH SINGH Date Department Chair ABSTRACT The Receptor for Advanced Glycation End Products (RAGE) and its ligands are expressed in multiple cancer types and are implicated in cancer progression. Our lab has previously reported higher transcript levels of RAGE and S100B in advanced staged melanoma patients. The contribution of RAGE in the pathophysiology of melanoma has not been well studied. Based on previous reports, we hypothesized that RAGE, when over-expressed in melanoma cells, promotes melanoma progression. To study the pathogenic role of RAGE in melanoma, a primary melanoma cell line, WM115, was selected and stably transfected with full length RAGE (FL_RAGE) to generate a model cell line over-expressing RAGE (WM115_RAGE). WM266, a sister cell line of WM115, originated from a metastatic tumor of the same patient was used as a metastatic control cell line in the study. After assessing the expression levels of RAGE in the transfected cells, the influence of RAGE on their cellular properties was examined.
    [Show full text]
  • Identification of Proteins That Are Differentially Expressed in Brains
    Journal of Proteomics 139 (2016) 103–121 Contents lists available at ScienceDirect Journal of Proteomics journal homepage: www.elsevier.com/locate/jprot Identification of proteins that are differentially expressed in brains with Alzheimer's disease using iTRAQ labeling and tandem mass spectrometry Benito Minjarez a,1, Karla Grisel Calderón-González a, Ma. Luz Valero Rustarazo b,2, María Esther Herrera-Aguirre a,MaríaLuisaLabra-Barriosa, Diego E. Rincon-Limas c,d, Manuel M. Sánchez del Pino b,3,RaulMenae,4, Juan Pedro Luna-Arias a,⁎ a Departamento de Biología Celular, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional (Cinvestav-IPN), Av. Instituto Politécnico Nacional 2508, Col. San Pedro Zacatenco, Gustavo A. Madero, C.P. 07360 Ciudad de México, México b Unidad de Proteómica, Centro de Investigación Príncipe Felipe, C/Rambla del Saler 16, 46012 Valencia, España c Department of Neurology, McKnight Brain Institute, University of Florida, Gainesville, FL 32611, USA d Department of Neuroscience, McKnight Brain Institute, University of Florida, Gainesville, FL 32611, USA e Departamento de Fisiología, Biofísica y Neurociencias, Cinvestav-IPN, Av. Instituto Politécnico Nacional 2508, Col. San Pedro Zacatenco, Gustavo A. Madero, C.P. 07360 Ciudad de México, México article info abstract Article history: Alzheimer's disease is one of the leading causes of dementia in the elderly. It is considered the result of complex Received 5 November 2015 events involving both genetic and environmental factors. To gain further insights into this complexity, we Received in revised form 26 February 2016 quantitatively analyzed the proteome of cortex region of brains from patients diagnosed with Alzheimer's Accepted 11 March 2016 disease, using a bottom-up proteomics approach.
    [Show full text]
  • Expression of a Phosphoglucomutase Gene in Rainbow Trout (Polymorphism/Developmental Rate/Glycolysis/Salmo Gairdneri) FRED W
    Proc. Natt Acad. Sci. USA Vol. 80, pp. 1397-1400, March 1983 Genetics Adaptive significance of differences in the tissue-specific expression of a phosphoglucomutase gene in rainbow trout (polymorphism/developmental rate/glycolysis/Salmo gairdneri) FRED W. ALLENDORF, KATHY L. KNUDSEN, AND ROBB F. LEARY Department of Zoology,, University of Montana, Missoula, Montana 59812 Communicated by G. Ledyard Stebbins, November 17, 1982 ABSTRACT We have investigated the phenotypic effects of fold increase in the expression of a phosphoglucomutase (PGM; a mutant allele that results in the expression of a phosphogluco- a-D-glucose-1,6-bisphosphate:a-D-glucose-l-phosphate phos- mutase locus (Pgml) in the liver of rainbow trout. Embryos with photransferase EC 2.7.5. 1) locus, Pgml, in liver tissue (14, 15). liver Pgml expression hatch earlier than embryos without liver The results of inheritance experiments are consistent with a sin- Pgml expression. These differences apparently result from in- gle regulatory gene, Pgml-t, with additive inheritance being re- creased flux through glycolysis in embryos with liver PGM1 ac- sponsible for the differences in the expression of this locus (15). tivity while they are dependent on the yolk for energy. Fish with We report here that the presence or absence of PGM1 in the liver PGM1 activity are also more developmentally buffered, as liver rise to indicated by less fluctuating asymmetry of five bilateral meristic gives important differences in several phenotypic traits. The more rapidly developing individuals begin exogenous characteristics of adaptive significance (developmental rate, de- feeding earlier and achieve a size advantage that is maintained velopmental stability, body size, and age at first maturity).
    [Show full text]
  • Viewed BMC Genomics 2001, 2:10
    BMC Genomics BioMed Central BMC Genomics :10 Research2 2001, article Genomic organisation and alternative splicing of mouse and human thioredoxin reductase 1 genes Simone A Osborne and Kathryn F Tonissen* Address: School of Biomolecular and Biomedical Science, Griffith University, Nathan, Queensland 4111, Australia E-mail: Simone A Osborne - [email protected]; Kathryn F Tonissen* - [email protected] *Corresponding author Published: 22 November 2001 Received: 28 August 2001 Accepted: 22 November 2001 BMC Genomics 2001, 2:10 This article is available from: http://www.biomedcentral.com/1471-2164/2/10 © 2001 Osborne and Tonissen; licensee BioMed Central Ltd. Verbatim copying and redistribution of this article are permitted in any medium for any non-commercial purpose, provided this notice is preserved along with the article's original URL. For commercial use, contact [email protected] Abstract Background: Thioredoxin reductase (TR) is a redox active protein involved in many cellular processes as part of the thioredoxin system. Presently there are three recognised forms of mammalian thioredoxin reductase designated as TR1, TR3 and TGR, that represent the cytosolic, mitochondrial and novel forms respectively. In this study we elucidated the genomic organisation of the mouse (Txnrd1) and human thioredoxin reductase 1 genes (TXNRD1) through library screening, restriction mapping and database mining. Results: The human TXNRD1 gene spans 100 kb of genomic DNA organised into 16 exons and the mouse Txnrd1 gene has a similar exon/intron arrangement. We also analysed the alternative splicing patterns displayed by the mouse and human thioredoxin reductase 1 genes and mapped the different mRNA isoforms with respect to genomic organisation.
    [Show full text]
  • Molecular Diagnosis of Glycogen Storage Disease and Disorders with Overlapping Clinical Symptoms by Massive Parallel Sequencing
    © American College of Medical Genetics and Genomics ORIGINAL RESEARCH ARTICLE Molecular diagnosis of glycogen storage disease and disorders with overlapping clinical symptoms by massive parallel sequencing Ana I Vega, PhD1,2,3, Celia Medrano, BSc1,2,3, Rosa Navarrete, BSc1,2,3, Lourdes R Desviat, PhD1,2,3, Begoña Merinero, PhD1,2,3, Pilar Rodríguez-Pombo, PhD1,2,3, Isidro Vitoria, MD, PhD4, Magdalena Ugarte, PhD1,2,3, Celia Pérez-Cerdá, PhD1,2,3 and Belen Pérez, PhD1,2,3 Purpose: Glycogen storage disease (GSD) is an umbrella term for a Results: Pathogenic mutations were detected in 23 patients. group of genetic disorders that involve the abnormal metabolism of ­Twenty-two mutations were recognized (mostly loss-of-function glycogen; to date, 23 types of GSD have been identified. The nonspe- mutations), including 11 that were novel in GSD-associated genes. In cific clinical presentation of GSD and the lack of specific biomarkers addition, CES detected five patients with mutations in ALDOB, LIPA, mean that Sanger sequencing is now widely relied on for making a NKX2-5, CPT2, or ANO5. Although these genes are not involved in diagnosis. However, this gene-by-gene sequencing technique is both GSD, they are associated with overlapping phenotypic characteristics laborious and costly, which is a consequence of the number of genes such as hepatic, muscular, and cardiac dysfunction. to be sequenced and the large size of some genes. Conclusions: These results show that next-generation sequenc- ing, in combination with the detection of biochemical and clinical Methods: This work reports the use of massive parallel sequencing hallmarks, provides an accurate, high-throughput means of making to diagnose patients at our laboratory in Spain using either a cus- genetic diagnoses of GSD and related diseases.
    [Show full text]
  • Role and Regulation of the P53-Homolog P73 in the Transformation of Normal Human Fibroblasts
    Role and regulation of the p53-homolog p73 in the transformation of normal human fibroblasts Dissertation zur Erlangung des naturwissenschaftlichen Doktorgrades der Bayerischen Julius-Maximilians-Universität Würzburg vorgelegt von Lars Hofmann aus Aschaffenburg Würzburg 2007 Eingereicht am Mitglieder der Promotionskommission: Vorsitzender: Prof. Dr. Dr. Martin J. Müller Gutachter: Prof. Dr. Michael P. Schön Gutachter : Prof. Dr. Georg Krohne Tag des Promotionskolloquiums: Doktorurkunde ausgehändigt am Erklärung Hiermit erkläre ich, dass ich die vorliegende Arbeit selbständig angefertigt und keine anderen als die angegebenen Hilfsmittel und Quellen verwendet habe. Diese Arbeit wurde weder in gleicher noch in ähnlicher Form in einem anderen Prüfungsverfahren vorgelegt. Ich habe früher, außer den mit dem Zulassungsgesuch urkundlichen Graden, keine weiteren akademischen Grade erworben und zu erwerben gesucht. Würzburg, Lars Hofmann Content SUMMARY ................................................................................................................ IV ZUSAMMENFASSUNG ............................................................................................. V 1. INTRODUCTION ................................................................................................. 1 1.1. Molecular basics of cancer .......................................................................................... 1 1.2. Early research on tumorigenesis ................................................................................. 3 1.3. Developing
    [Show full text]