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Ontology Engineering in UML: Best Practices & Lessons Learned of a Working Ontologist
Elisa Kendall Thematix Partners LLC OMG Technical Meeting, 19 March, 2013
+ Content management
Mars was photographed by the Hubble Space Telescope in August 2003 as 2 2 the planet passed closer to Earth than it had in nearly 60,000 years. Image Credit: NASA, J. Bell (Cornell U.) and M. Wolff (SSI) A sunset on Mars creates a glow due to the presence of tiny dust particles in the atmosphere. This photo is a combination of four images taken by Mars Pathfinder, which landed on Mars in 1997. Image credit: NASA/JPL
Recent images from instruments on board the Mars Reconnaissance Orbiter take much more detailed, narrower views of specific features of the Martian surface. Image credit: NASA/JPL
The Planetary Data Store (PDS) is a distributed repository of 40+ years’ imagery & data taken by a range of instruments on many diverse missions, available for scientific research.
Copyright © 2013 Thematix Partners LLC + Smart search
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Provenance/sources for tracking family members in the 19th century include early census data (often error prone), military records, passenger & immigration lists, online documents (e.g., county histories, church histories, etc.)
• Historical/forensic research requires cross-domain search of a wide variety of resources within a given geo-spatial/temporal context • Similar capabilities are essential for business intelligence, law enforcement, government applications – all require terminology reconciliation
Copyright © 2013 Thematix Partners LLC + Merchandising
4 4 Attribute 1 Attribute 2 Leg Room Attribute 4 Attribute 5 Attribute 5 On-Off Access “Comfort- Attribute 7 Attribute 8 Oriented” Attribute 9 Flight Media Options Attribute 11 Attribute 12 Meal Options Attribute 14 Attribute 15 Time of Day Attribute 17 Attribute 18 Distance to Gate Attribute 20 Attribute 21 Flight Characteristics Attribute N …
Copyright © 2013 Thematix Partners LLC + Search Engine Optimization
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Use search engines as a front door to transaction
Dramatically increase relevance by inclusion of more meaningful, synonymic tags
Enrich search results, adding ratings, video, prices, avails, amenities, locality etc.
Copyright © 2013 Thematix Partners LLC + Tutorial Outline
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Introduction to Knowledge Representation
OWL Basics & Using UML /ODM for Modeling OWL Ontologies
Putting it all together
Copyright © 2013 Thematix Partners LLC + Part 1: Introduction to Knowledge Representation
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A little background and a few definitions
Layers of abstraction & conceptual modeling
Classifying ontologies
A little methodology
Copyright © 2013 Thematix Partners LLC + Historical Context
8 8 Knowledge Representation Cross-disciplinary field with historical roots in philosophy, linguistics, computer science, and cognitive science Goal is to represent the meaning of knowledge unambiguously, so that it can be understood, shared, and used by computational agents acting on behalf of people to accomplish some task
Philosophical origins Socrates questioning, Plato’s studies of epistemology – the nature of knowledge Aristotle’s shift to terminology, development of logic as a precise method for reasoning about knowledge Arguments for the existence of God dating back to Anselm of Canterbury Medieval theories of reference and of mental language, Scholastic logic
Plato and Aristotle at the School of Athens, by Raphael
Copyright © 2013 Thematix Partners LLC + Historical Context
“Brain Cells for Grandmother” 9 9 Neuroscientists continue to debate today how we store memories One theory, documented as recently as this month in a Scientific American article, suggests that single neurons hold our memories, as concept cells “Each concept – each person or thing in everyday experience – may have a set of corresponding neurons assigned to it” Rodrigo Quian Quiroga, Itzhak Fried and Christof Koch, February 2013 issue, Scientific American “…a relatively few neurons, numbering in the thousands or perhaps even less, constitute a “sparse” representation of an image.” “ Our brain may use a small number of concept cells to represent many instances of one thing as a unique concept – a sparse and invariant representation … What is important is to grasp the gist of particular situations Visual perception - Neural coding involving persons and concepts that are relevant to us, from the University of Leicester, rather than remembering an overwhelming myriad of Department of BioEngineering meaningless detail.” “The full recollection of a single memory episode requires links between different but associated concepts … If two concepts are related, some of the neurons encoding one concept may also fire to the other one.”
Copyright © 2013 Thematix Partners LLC + Definitions
An ontology is a specification of a conceptualization. 10 10 – Tom Gruber
Knowledge engineering is the application of logic and ontology to the task of building computable models of some domain for some purpose. – John Sowa
Artificial Intelligence can be viewed as the study of intelligent behavior achieved through computational means. Knowledge Representation then is the part of AI that is concerned with how an agent uses what it knows in deciding what to do. – Brachman and Levesque, KR&R
Knowledge representation means that knowledge is formalized in a symbolic form, that is, to find a symbolic expression that can be interpreted. – Klein and Methlie
The task of classifying all the words of language, or what's the same thing, all the ideas that seek expression, is the most stupendous of logical tasks. Anybody but the most accomplished logician must break down in it utterly; and even for the strongest man, it is the severest possible tax on the logical equipment and faculty. – Charles Sanders Peirce, letter to editor B. E. Smith of the Century Dictionary
Copyright © 2013 Thematix Partners LLC + What is an Ontology?
An ontology specifies a rich description of the 11 11 Terminology, concepts, nomenclature
Properties explicitly defining concepts
Relations among concepts (hierarchical and lattice)
Rules distinguishing concepts, refining definitions and relations (constraints, restrictions, regular expressions)
relevant to a particular domain or area of interest.
Copyright © 2013 Thematix Partners LLC + Logic and Ontology
12 12 Predicate logic is harder to read than the original English, but is more precise: Every semi-trailer truck has at least 3 axles.
(∀ x)(((SemiTrailerTruck(x) ∧ (∃ y)(SemiTrailer(y) ∧ (hasPart (x,y))) ∧ (SemiTrailerTruck(x) ∧ (∃ z)(TractorUnit(z) ∧ (hasPart (x,z)))) ⊃ (∃ s)(set(s) ∧ (count(s,(≥3)) ∧ (∀ w)(member(w,s) ⊃ (Axle(w) ∧ hasPart(x,w))) )).
Logic is a simple language with few basic symbols. The level of detail depends on the choice of predicates – these predicates represent an ontology of the relevant concepts in the domain. Different choices of predicates represent different ontological commitments.
* Derived from Knowledge Representation: Logical, Philosophical, and Computational Foundations, John F. Sowa, Brooks/Cole, Pacific Grove, CA, 2000.
Copyright © 2013 Thematix Partners LLC + Ontology-based Technologies
13 13 Ontologies provide a common vocabulary for use by independently developed resources, processes, services
Agreements among organizations sharing common services can be made with regard to their usage; the meaning of relevant concepts can be expressed unambiguously
By composing / mapping ontologies and mediating terminology across participating events, resources and services, independently-developed services can work together to share information and processes consistently, accurately, and completely
Ontologies also ensure Valid conversations among agents to collect, process, fuse, and exchange information Accurate searching by ensuring context using concept definitions and relations instead of/in addition to statistical relevance of keywords
Copyright © 2013 Thematix Partners LLC + Features of KR languages
Vocabulary – a collection of symbols 14 14 Domain-independent logical symbols (e.g., ∀ or ⊃) Domain-dependent constants, identifying individuals, properties, or relations in the application domain or universe of discourse Variables, whose range is governed by quantifiers Punctuation that separates or groups other symbols Syntax – formation rules that determine how symbols can be combined in well- formed expressions rules may be stated in a linear grammar, graph grammar, or independent abstract syntax Semantics – a theory of reference that determines how the constants and variables are associated with things in the universe of discourse a theory of truth that distinguishes true statements from false statements Rules of Inference – rules that determine how one pattern can be inferred from another if the logic is sound, the rules of inference must preserve truth as determined by the semantics Copyright © 2013 Thematix Partners LLC + Logic Logics vary from classical FOL along six dimensions: 15 Syntax 15 Subsets limit permissible operators or combinations, e.g., propositional logic (without quantifiers), Horn-clause (excludes disjunctions in conclusions, such as Prolog), terminological or definitional logics (containing additional restrictions, e.g., description logics) Proof Theory restricts or extends permissible proofs: • Intuitionistic logic and relevance logic rule out certain extraneous information • Non-monotonic logics allow introduction of default assumptions • Access-limited logic restricts the number of times a proposition can be used in a proof; Linear logic allows a proposition to be used only once • Modal logic incorporates modal auxiliaries (◊p means p is possibly true; p means p is necessarily true), temporal logic extends model logic to include always, sometimes • Intensional logics express concepts such as need, ought, hope, fear, wish, believe, know, expect, and intend Model Theory modifies the truth value of statements in terms of some model of the world: classical FOL is two-valued; a three-valued logic introduces unknowns; fuzzy logic uses the same notation as FOL but with an infinite range of certainty factors (1.0 to 0.0) Ontology – frameworks may include support for built-in components, such as set theory or time Meta-language – language for encoding information about objects
Copyright © 2013 Thematix Partners LLC + Description logic
16 A family of logic-based Knowledge Representation formalisms 16 Descendants of semantic networks and KL-ONE Describe domain in terms of concepts (classes), roles (relationships), and individuals (instances) Distinguished by Formal semantics • Decidable fragments of FOL • Closely related to Propositional, Modal, and Dynamic Logics Provision of inference services • Sound and complete decision procedures for key problems • Implemented systems (highly optimized) Applications include Configuration – product configurators, consistency checking, constraint propagation, first significant industrial application (e.g., CLASSIC) Ontologies – ontology engineering (design, maintenance, integration), reasoning with ontology-based mark-up, service description and discovery Databases – consistency of conceptual schemata, schema integration, query subsumption (w.r.t. conceptual schemata)
Copyright © 2013 Thematix Partners LLC + Knowledge bases, databases, & ontology
17 17 An ontology is a conceptual model of some aspect of a particular universe of discourse (or of a domain of discourse)
Typically, ontologies contain only “rarified” or “special” individuals, metadata, representing elemental concepts critical to the domain
A knowledge base is a persistent repository for Ontology & metadata representing individuals, facts, & rules about how they can be combined or relate to one another Metadata, facts & rules only – in some applications and frameworks the ontology is separately maintained
Most inference engines require in-memory deductive databases for efficient reasoning (including commercially available reasoners)
A knowledge base may be implemented in a physical, external database, such as a relational database, but reasoning is typically done on a subset (partition) of that knowledge base in memory
Copyright © 2013 Thematix Partners LLC + Reasoning & Truth Maintenance
18 18 Reasoning is the mechanism by which the assertions made in an ontology and related knowledge base are evaluated by an inference engine. In classical logic, the validity of a particular conclusion is retained even if new information is received. This may change if some of the preconditions are actually hypothetical assumptions invalidated by the new information. The same idea applies for arbitrary actions – new information can make preconditions invalid. Generally, there are two issues that a reasoner must address: If some conclusion is invalid, which other conclusions are also invalid? If some action cannot be performed, which others are at risk? The “housekeeping” associated with tracking the threads that support answering these questions is called truth maintenance.
Copyright © 2013 Thematix Partners LLC + Negation
19 19 If all new information is “positive”, then all prior conclusions should remain valid. Problems arise if new information negates a prior assumption, causing it to be withdrawn. What does it mean to negate (withdraw) an assumption? Conclusive information is not available? The assumption cannot be proven? The assumption is not provable using certain methods? The assumption is not provable given a fixed quantity of time? The answers to these questions can result in different definitions of negation and differing interpretations by non-monotonic reasoners. Solutions include chronological and “intelligent” backtracking algorithms, heuristics, circumscription algorithms, justification or assumption based retraction, and so forth, depending on the reasoner and methods used for truth maintenance. Reasoning efficiency is dependent, in part, on the algorithms applied for truth maintenance.
Copyright © 2013 Thematix Partners LLC + Explanations and Proofs
20 20 When a reasoner draws a particular conclusion, many users and applications want to understand why?
Primary motivations include interoperability, reuse, and trust
Understanding the provenance of the information and results is crucial, especially when web-based information is involved What information sources were used (source) How recently they were updated (currency) How reliable these sources are (authoritativeness) Was the information directly available or derived, and if derived, how (method of reasoning) Methods used to explain why a reasoner reached a particular conclusion include explanation generation and proof specification
Copyright © 2013 Thematix Partners LLC + Analysis approaches
21 21 Definitions range from high-level mind mapping and brainstorming … to detailed collaboration, dialog, and information modeling to support knowledge sharing
Tools are equally diverse, from inexpensive brainstorming tools to sophisticated ontology and software model development environments
Common capabilities include
“drawing a picture” that includes concepts and relationships between them
producing sharable artifacts, that vary depending on the tool – often including web sharable drawings
Copyright © 2013 Thematix Partners LLC + Abstraction Layers
• Identify subject areas Contextual 22 22 Ontology • Define the meaning of things in the organization Conceptual
• Describe the logical representation of properties Ontology, Conceptual ER, Conceptual Logical Business Process …
• Describe the physical means by which data is stored ER, Relational, XML Schema Physical
XML, source code, scripting languages, • Represent the coding language on a specific development platform Definition stored procedures…
Physical KBs, • Hold the values of the properties applied to the data in a schema databases, asset repositories… Instance *Layering diagram courtesy Kenn Hussey Knowledge Representation / Management for Large Scale Applications Provide broad metadata, process, service & asset management facilities (including feedback/lessons learned…) Enable rich cross-domain, cross-process, cross organizational modeling supported by mapping & transformation services to provide maximum flexibility, interoperability Leverage standards and best practices in information architecture, metadata modeling, management, registration, and governance, and asset management & registration Provide incremental reasoning capabilities for model validation, transformation services
Repeatable, reusable, interoperable Copyright © 2013 Thematix Partners LLC + Hypothetical Conceptual Model “EU-Rent”
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Produced using Embarcadero EA/Studio Business Modeler Edition, courtesy Kenn Hussey
Copyright © 2013 Thematix Partners LLC + Hypothetical Logical Model “EU-Rent”
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Produced using Embarcadero ER/Studio, courtesy Kenn Hussey Copyright © 2013 Thematix Partners LLC + Hypothetical Physical Model “EU-Rent”
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Produced using Embarcadero ER/Studio, courtesy Kenn Hussey
Copyright © 2013 Thematix Partners LLC + Classifying ontologies
26 26 Classification techniques are as diverse as conceptual models; and generally include understanding
KR System Level of Expressivity Level of Complexity / Structure OO Software Model Granularity Entity – Relationship Target Usage, Relevance Model Amount of Automation, Reasoning Requirements Concept Map Prescriptive vs. Descriptive / Reliability / Level Topic Map
of Authoritativeness Design Methodology Database Schema Governance XML Schema
Vocabulary Management, Metrics Hierarchical Taxonomy Simple Taxonomy
Level of of Level Expressivity Glossary
Level of Complexity
Copyright © 2013 Thematix Partners LLC + Framework of dimensions
27 27 Semantic Dimensions Expressiveness: represents how well a KR language addresses increasingly complex semantics Structure: represents how well an ontology encodes semantics, with the same or less expressivity than the KR language Granularity: represents the level of detail specified in an ontology
Pragmatic Dimensions Intended use: the original use case(es), or purpose for developing a particular ontology Automated reasoning: the extent to which the ontology is designed to be used for automated reasoning Prescriptive vs. Descriptive: the extent to which an ontology was intended to be used for descriptive purposes vs. normative prescriptive use (i.e., with high degree of concern for correctness) Reference: http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2007
Copyright © 2013 Thematix Partners LLC + Considerations
Intended use of ontologies, including domain requirements (e.g., 28 28 scientific and engineering apps require formulas, units of measure, computations that may be challenging to represent) Intended use of KRSs that implement them, including reasoning requirements, questions to be answered For distributed environments, the number and kinds of resources, processes, services requiring ontologies – how distributed, how unique, developed collaboratively or independently, dynamic community participation or static What kinds of transformations are required among processes, resources, services to support semantic mediation Ontology and KRS alignment / de-confliction / ambiguity resolution requirements Ontology and KRS composition requirements, dynamic vs. static composition, in what environment and under what constraints Performance, sizing, timing requirements of target environment
Copyright © 2013 Thematix Partners LLC + A little methodology …
Requirements, domain & use case analysis are critical 29 29 Develop initial source/reference material Focus on system or application requirements Iterative development starting with a “thread” that covers basic capabilities can ground the work and prioritize decisions Need to understand and communicate Architectural trade-offs, cost & technical benefits The nature of the information & kinds of questions that need to be answered drive the architecture, approach, and ontology scoping and design Use discipline from formal domain analysis and use case development in UML to document and explain requirements identify requisite information sources and ontologies needed limit scope creep Reuse standards and well-tested, available ontologies whenever possible
Copyright © 2013 Thematix Partners LLC + What to look for
A controlled vocabulary 30 30 FAA & IATA airport codes, ACRISS car codes, … A hierarchical or taxonomic structure (for query expansion) Vehicle, Ground-based Vehicle, Wheeled Vehicle, Powered Vehicle, Automobile, Sedan… Knowledge supporting structured queries Find all available hybrid SUVs or hybrid sedans that can seat four adults within a reasonable taxi ride of Planet Hollywood, Las Vegas for 3-4 days the week of June 20th Efficient inference (i.e., limited expressive power) vs. increased expressivity (potentially expensive or resource bounded computation) Custom reasoning for temporal relations, geospatial, dynamic algorithm / equation evaluation, process-specific, conditional operations Computational tractability
Copyright © 2013 Thematix Partners LLC + Using use cases to gather requirements
A good summary for every use case should include: A description of the basic business requirement / need the use case is intended to support 31 31 Primary goals Scope – identify any known boundaries as a starting point Pre-conditions and post conditions – any assumptions you know about the state of the “system”/world before and after Actors and interfaces – identify primary actors, information sources, interfaces to existing or new systems Triggers – what kicks off the use case, any particular series of events, situation, activity, etc., and any that affect the flow Performance requirements – including any sizing or timing constraints, “ilities” , etc. Outline the major process steps for both the “normal”, or primary scenario, and alternative flows, such as if things don’t go well Use case and activity diagrams – typically done in UML, but could be visio, power point, or whatever tools your team is comfortable with Usage scenarios – you should have at least two narrative “stories” that describe how one of the main actors would experience the use case, with the intent of identifying additional requirements Competency Questions – identify as many of the questions you want the ontology / knowledge base to answer as possible Resources – describe any known contributing knowledge bases, other external resources that will be participating in the use case to the degree possible
Copyright © 2013 Thematix Partners LLC + Start with canonical definitions
General concepts as well as domain-specific knowledge 32 32 Basic starting point – cross-domain definitions Namespace definitions, metadata, naming conventions, governance policies Commonly used structures & vocabularies, such as domain-specific vocabulary & messaging standards, international country & language codes (ISO), national postal addressing or other government standards, industry best practices Common metadata for ontology & schema management (e.g., Dublin Core, for documents & models, ISO 1087 for synonyms & similar relations, MIME media types for images & multimedia, etc.) Domain vocabularies must be prioritized, selected based on business requirements, clear ROI Common early targets include Smart search (pull); customer experience & cross-sell / upsell (push) Richer interoperability among trading partners Service registration, description, discovery & management Asset/artifact repository search & retrieval Automated verification
Copyright © 2013 Thematix Partners LLC
+ Capturing definitions
33 Layout a high-level architecture for key ontologies and ontology elements 33 Identify the relationships among elements – roles, domain, interface, process, utility Define an approach for gathering content from subject matter experts, possibly based on IDEF5 (Integrated Definition Methods) Ontology Capture Method Analysis, that includes Understanding and documenting source materials An interview template Traceability back to your use cases For each ontology element Describe its domain and scope, how it will be used Identify example questions and anticipated/sample answers for the application(s) it will support Identify key stakeholders, ownership, maintenance, resources for instance knowledge Describe anticipated reuse/evolution path Identify critical standards, resources that it must interoperate with, dependencies Resources http://www.idef.com/IDEF5/html http://www.kbsi.com/technology/methods/sbont.htm
Copyright © 2013 Thematix Partners LLC + Terminology analysis
34 34 ISO 704, Principles & Methods for Terminology Work, provides a methodology for describing concepts & terms Uses ISO 1087 for terminology Uses ISO 860 for terminology “harmonization” (alignment) methods Basis for typical methods used for taxonomy development today Describes how to flesh out definitions Recommendations strategies for relating terms to one another using standard vocabulary ISO 1087 – great resource for language to describe kinds of relationships, acronyms & other designations, preferred vs. deprecated terms, etc. ISO 860 augments this with recommendations for vocabulary comparison
Copyright © 2013 Thematix Partners LLC + Modularity
Guidance on modularity is limited 35 35 When is any model “too big”? Can individual parts evolve independently, and if so, shouldn’t that dictate module boundaries? Can individual parts be used independently, and if so, shouldn’t that also dictate module boundaries? For ontologies, particularly OWL ontologies, individuals should be managed separately from “schema” to facilitate reasoning during development (i.e., if you add an individual that creates a logical inconsistency, most reasoners won’t load the ontology at all)
Current practices in the semantic web community address modularity either statically or dynamically Static approaches include adherence to “DL-Safe” rules and suggestions in papers by Alan Rector (University of Manchester) Dynamic approaches include use of tools that can assist in determining whether or not an ontology is appropriately modularized, using reasoning to perform rewriting with respect to soundness and completeness for a given ontology
Copyright © 2013 Thematix Partners LLC + Separation of concerns
36 36 Critical dimensions aid in determining module boundaries – separate business-related content from technical detail aspects of the business content, such as branding, from others describing distribution rights separate disciplines into independent modules
Other considerations include separation based on back-end store / source repositories application boundaries, system interfaces distributed resources the need to reason over some parts of the knowledge base but not others to answer sets of critical questions performance requirements, for reasoning, query answering, etc. asserted vs. inferred content
Copyright © 2013 Thematix Partners LLC + Key methodology issues
Naming conventions and versioning policies are critical for –every– 37 37 organization Namespace definitions for ontologies are critical, along with policies for their management that are well understood http://
Copyright © 2013 Thematix Partners LLC + Best practices in namespace development
Availability – people should be able to retrieve a description about the resource identified by the URI from the network (albeit internally) 38 38 Understandability – there should be no confusion between identifiers for networked documents and identifiers for other resources URIs should be unambiguous URIs are meant to identify only one of them, so one URI can't stand for both a networked document and a real-world object Separation of concerns in modeling “subjects” or “topics” and the objects in the real world they characterize is critical, and has serious implications for designing and reasoning about resources Simplicity – short, mnemonic URIs will not break as easily when shared for collaborative purposes, and are typically easier to remember Persistence – once a URI has been established to identify a particular resource, it should be stable and persist as long as possible Exclude references to implementation strategies, as technologies change over time (e.g., do not use ‘.php’ or ‘.asp’ as part of the URI scheme), and organization lifetime may be significantly shorter than that of the resource Manageability – given that URIs are intended to persist, administration issues should be limited to the degree possible Some strategies include inserting the current year or date in the path so that URI schemes can evolve over time without breaking older URIs Create an internal organization responsible for issuing and managing URIs, and corresponding namespace prefixes Copyright © 2013 Thematix Partners LLC
+ Best practices in publishing vocabularies
39 39 Provide readable documentation, about the vocabulary or model, including the terms, their definitions, proper usage patterns and scenarios, and clear examples
Articulate your maintenance policies, so that those depending on the information model can understand how stable it is, how to provide feedback to its stewards, and so forth
Identify versions and allocate URIs to the unique information models so that they can be referenced Every version of a defined or imported XML schema module, information model, document, etc., aside from locally defined, internal modules, must have a unique namespace. This allows us to align schema versioning with namespace versioning, as appropriate for some applications.
Publish the formal schema (or ontology)
Provide a means for your community of users to provide feedback
Copyright © 2013 Thematix Partners LLC + Model element naming
For naming entities in an ontology – there are some rules of thumb that vary by community of practice 40 40 data modelers often use underscores at word boundaries, spaces in names – which semantic web tools may not handle well (ok in labels) some name properties
Copyright © 2013 Thematix Partners LLC + Metadata for ontologies & elements
Metadata should be standardized at both the model level and the 41 41 element level for every model (not just ontologies)
Model level metadata can reuse properties from the Dublin Core Metadata Terms, from the Simple Knowledge Organization System (SKOS), ISO 11179 Metadata Registry standard with ISO 1087 Terminology support, emerging W3C work on provenance and others
Most annotations should be optional at the element level, but a minimal set, including names, labels, and formal, text definitions, is important for reusability & collaboration
Consistent use of the same annotations (properties, tags) improves readability, facilitates automated documentation generation, and enables better search over ontology repositories
Model level metadata may reuse organization-specific taxonomies to enable better search through RDFa tagging, for example
Latest version of an OMG architecture board recommended vocabulary for specification metadata for use in OMG standards is available to members at http://www.omg.org/cgi-bin/doc?ab/2013-02-02
Specifications up for review at the OMG March Technical Meeting, in Reston, including the Information Exchange Framework (IEF) Packaging Policy Vocabulary (IEPPV) and Financial Industry Business Ontology (FIBO), use this
Copyright © 2013 Thematix Partners LLC + Change management
Change management and traceability is not well defined at the 42 42 element level for ontologies, still a research topic
Approach to element-level versioning to support reasoning is to track two parallel streams: one for additions to the ontology, one for retractions; often managed as two separate files
MOF versioning suggests linking to a workspace; use of a default workspace would get the latest version, and tools such as MagicDraw© can provide an indication of the differences
MOF versioning does not support reasoning about the differences so that users can determine the impact of applying the changes, which is frequently required in the semantic web community – addition or deletion of axioms can change downstream reasoning results, especially where there are complex dependencies
Mechanisms that preserve the versioning detail in generated artifacts, such as RDF/XML serialized OWL, are essential Consider the use cases/justification for whatever level of versioning detail is needed on a project by project basis Balance with usability/performance Copyright © 2013 Thematix Partners LLC + Part 2: OWL Basics
A quick intro to RDF and RDF Schema 43 43 Basic constructs: descriptions & classes Class expressions Properties & restricting property values Individuals & data ranges Miscellaneous class axioms New features of OWL 2 A few rules of thumb Depth vs. breadth, naming, synonymous terms Class vs. property value, class vs. individual Limiting scope Motivation for using UML Ontology development using the Ontology Definition Metamodel (ODM) Relationships to other OMG & ISO Standards
Copyright © 2013 Thematix Partners LLC + Semantic Web
44 44 "The Semantic Web is an extension of the current web in which information is given well-defined meaning, better enabling computers and people to work in cooperation." -- Tim Berners-Lee
Copyright © 2013 Thematix Partners LLC + Guiding Principles
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Historically, knowledge representation and reasoning systems have operated under closed world assumptions Uncertainty is magnified under open-world, “wild, wild web” conditions, making reasoning much more difficult Semantic web languages are designed to support less certainty, to provide “better” search results, informed answers to questions, not absolutes Because they are based on XML, such languages can assist businesses in leveraging existing investment in mark-up, content, and data To augment business intelligence/analysis and knowledge mining To support knowledge sharing and collaboration, augment enterprise information integration Enrich web services and other applications Support policy-based applications and ensure compliance with policy
at a lower cost with higher potential ROI than traditional computing methods
Copyright © 2013 Thematix Partners LLC + Resource Description Framework (RDF)
Describes relationships 46 46 Uses URIs used for naming Language has graph based model RDF/XML serialization (exchange syntax) other presentation syntaxes (N3, Turtle, …) Specification, W3C presentations, tools are available at Semantic Web: http://www.w3.org/standards/semanticweb/ Linked Data: http://www.w3.org/standards/semanticweb/data RDF: http://www.w3.org/standards/techs/rdf#w3c_all RDF “next steps” revision working group is making specific enhancements, “fixes” to the standard
RDF Working Group: http://www.w3.org/2011/rdf-wg/wiki/Main_Page Candidate Recommendation for a Turtle (Terse RDF Triple Language) specification – published 19 Feb 2013, at http://www.w3.org/TR/2013/CR- turtle-20130219/ Current Working Draft for RDF 1.1 Concepts and Abstract Syntax – published 15 Jan 2013, at http://www.w3.org/TR/2013/WD-rdf11-concepts- 20130115/
Copyright © 2013 Thematix Partners LLC + RDF Notation Options
47 47 Subject
http://www.omg.org/news/meetings/tc/dc-13/TechnicalMeeting#Conference Predicate Graph: http://www.omg.org/news/meetings/tc/dc-13/TechnicalMeeting#heldAt
Object http://www.omg.org/news/meetings/tc/dc-13/TechnicalMeeting#HyattRegencyReston
N3: omg-tm:Conference omg-tm:heldAt omg-tm:HyattRegencyReston .
Copyright © 2013 Thematix Partners LLC + RDF Schema (RDFS)
An RDF vocabulary that provides for identifying: 48 48
classes,
subsumption (inheritance) relations for classes,
subsumption (inheritance) relations for properties,
domain and range for properties
Copyright © 2013 Thematix Partners LLC + RDF Schema (RDFS)
49 49
omg-tm:Hotel rdfs:subClassOf Graph: rdf:type
rdfs:Class omg-tm:ConferenceHotel rdf:type rdf:type
omg-tm:HyattRegencyReston
Copyright © 2013 Thematix Partners LLC + The Web Ontology Language (OWL)
Two languages emerged in parallel to address semantic web 50 50 requirements DAML-ONT, supported by the DARPA/DAML program OIL (Ontology Inference Layer) developed by EU & US researchers Merged DAML+OIL was submitted to the W3C 2002, formed the basis for the WebOnt Working Group OWL extends RDF Schema Has an RDFS based syntax and reuses some RDF vocabulary (e.g., subClassOf, domain, range) Adds rich primitives and redefines others (transitivity, inverse, cardinality constraints, complex class definitions) Describes the structure of a domain in terms of classes and properties Uses RDFS for class/property membership assertions (ground facts), XML Schema Datatypes OWL specifications became W3C recommendations in February 2004 OWL 2 specifications was adopted in October 2009, with minor revisions in December 2012
Copyright © 2013 Thematix Partners LLC + Describing classes
51 51 A class is a concept in the domain Vintage – a wine made from grapes grown in a specified year A set of characteristics (flavor, body, color, sugar…) A class is a collection of elements with similar properties White wine – wines made from white grapes White table wine – wines made from white grapes that are not appellations or regional (not “quality wine” in the EU) A class expression defines necessary conditions for membership (specific varietal, field, micro-climate, date picked, date bottled) Instances of classes Daniel Gehrs 2009 Merlot Robert M. Parker, Jr,’s Wine Advocate review, dated February 28, 2002 Los Olivos, Santa Barbara County, California, USA
Copyright © 2013 Thematix Partners LLC + Class inheritance
Classes are organized into subclass-superclass (or generalization-specialization) hierarchies 52 52
True subclass relationships are the basis of a formal is-a hierarchy Classes are “is-a” related if an instance of the subclass is an instance of the superclass is-a hierarchies are essential for classification Violation of true is-a hierarchical relationships can have unintended consequences & and cause errors in reasoning
Class expressions should be viewed as sets, and subclasses as a subset of the superclass, in contrast with a collection of attributes as classes are sometimes specified in object oriented programming
Examples FloweringPlantType is a subclass of PlantType Every flowering plant is a plant; every instance of a flowering plant (e.g., * courtesy Monrovia web site Azalea indica 'Alaska' (Rutherfordiana hybrid) is an instance of a flowering plant Azalea is a subclass of FloweringPlantType, Rhododendron Monrovia is a company that breeds, grows, and sells flowering plants
Copyright © 2013 Thematix Partners LLC + Class expressions
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6 primary kinds of class expressions in OWL 5 anonymous Definitions can be nested using set-theoretic constructs Copyright © 2013 Thematix Partners LLC + Example class hierarchy with other expressions
54 54
Example from ISO 1087 combining subclass-superclass and union expressions Provides a more accurate representation of the relationships defined in the ISO standard than a strict is-a hierarchy would
Copyright © 2013 Thematix Partners LLC + Example class hierarchy with other expressions
55 55
Copyright © 2013 Thematix Partners LLC + Modeling considerations for class hierarchy development 56 56 Practitioners tend to start Top-down - define the most general concepts first and then specialize them Bottom-up - define the most specific concepts and then organize them into more general classes Combination (typical – breadth at the top level and depth along a few branches to test design) Class inheritance is transitive A is a subclass of B (white wine, dessert wine are subclasses of wine) B is a subclass of C (sauvignon blanc is a subclass of white wine, late harvest wine is a subclass of dessert wine) therefore A is a subclass of C (late harvest sauvignon blanc is a subclass of white wine, dessert wine, & wine) Start with a more formal is-a approach, tease out whether other expressions are more appropriate based on use cases, formal definitions when available, etc.
Copyright © 2013 Thematix Partners LLC + Class axioms
57 57 Subsumption (necessary) A B where B B is a class description ⊆ partial or primitive class
A
Definition (necessary and sufficient) C ≡ D where D is a class description D complete or defined class C
Courtesy Evan Wallace, NIST
Copyright © 2013 Thematix Partners LLC + Disjoint classes
A 58 58 B Classes are disjoint if they cannot have common instances Disjoint classes cannot have any common subclasses If winery and wine are disjoint, then there is no instance that is both a winery and a wine; there is no class that is both a subclass of winery and a subclass of wine Disjointness is often used to aid consistency checking Disjointness is also helpful in teasing out subtle distinctions among classes across multiple ontologies Equivalence is also often used to identify the same concepts across ontologies that may be named differently, or to name classes defined through class axioms
Copyright © 2013 Thematix Partners LLC + Properties
Properties describe characteristics, features, or attributes of the 59 59 members of a class Every flowering plant has a bloom color, color pattern, flower form, petal form, etc. Classes of properties intrinsic: properties of the plant itself such as the optimal sunlight, soil conditions, expected height, Sunset climate zone, and so forth extrinsic: properties imposed externally such as the grower and price whole-part relations geospatial, mereonomic relations: what microclimates are this plant well suited to, where in a particular historic garden will you find it Data and object properties simple attributes typically have primitive data values (e.g., strings, numbers) complex properties refer to other entities (e.g., an individual grower, such as Monrovia, or organization such as the American Orchid Society) OWL reasoning requires strict separation of data and object properties
Copyright © 2013 Thematix Partners LLC + Properties in OWL 2
60 60
Copyright © 2013 Thematix Partners LLC + Domain & range properties
61 61 In OWL and many other KR languages, relations (properties) are strictly binary The domain & range represent the source & target arguments, respectively, for the property Domain – the class (or classes) that may have the property − Wine is the domain of the property hasWineColor Range – the class (or classes) defining valid property values − everything that fulfills the hasWineColor property is an instance of the enumerated class {red, white, rose} Some KR languages that inherently support n-ary relations, such as CL, do not make this distinction More flexible, intuitively more like mathematics, where functions have ranges (or return types) but not all relations are functions Requires additional relations to specify argument order, which can be critical for ontology alignment
Copyright © 2013 Thematix Partners LLC + Meta-properties – global cardinality restrictions
62 62 Range Functional
Domain Range
Inverse Functional
Courtesy Evan Wallace, NIST Domain Copyright © 2013 Thematix Partners LLC + Class & property inheritance
63 63 A subclass inherits all the properties from its super class If a wine has a name and flavor, a red wine also has a name and flavor If a class has multiple super classes, it inherits properties and restrictions from all of them Latin is both an individual language and an ancient language. It inherits “has attested literature: true” from ancient language and “has indigenous name: lingua latina” from individual language
Copyright © 2013 Thematix Partners LLC + Class expressions that restrict property values
64 64 Number restrictions describe or limit the number of possible values a particular property can have A language must be associated with at least one English name and at least one French name A language may be associated with zero or more Indigenous names
Cardinality – similar meaning to classical set theory, measures the number of elements in the set (restriction class) Cardinality – cardinality N means the class defined by the property restriction must have exactly N values (individual or literal values) Minimum cardinality - 1 means that there must be at least one value (required), 0 means that the value is optional Maximum cardinality - 1 means that there can be at most one value (single-valued), N means that there can be up to N values (N > 1, multi-valued)
Copyright © 2013 Thematix Partners LLC + Simple number restriction examples
Creating a class of individuals that have exactly one color & a class of individuals that have more than one color
Note that the relationship between SingleColoredThing and the restriction class is modeled as an equivalence relationship, meaning that membership in the restriction class is a necessary and sufficient condition for being a SingleColoredThing
Copyright © 2013 Thematix Partners LLC + Qualified cardinality number restriction example
66 66
OWL 2 provides the capability to further qualify cardinality by specific classes and data ranges
Patterns that reuse a smaller number of significant properties, building up more complex class expressions that limit the set of valid values are common, useful in complex classification systems
Copyright © 2013 Thematix Partners LLC + Qualified cardinality number restriction example
Copyright © 2013 Thematix Partners LLC + Class expressions that restrict possible values by type 68 68
Universal (allValuesFrom) and existential (someValuesFrom) quantification allValuesFrom is the OWL equivalent for ∀(x), and restricts the possible values for a property to members of a particular class or data range someValuesFrom is the OWL equivalent for ∃(x), and restricts the possible values for a property to at least one member of a particular class or data range
Specific value (hasValue) restrictions a single data value (e.g., the color property for a RedWine must be filled with the value “red”) an individual member of a class (e.g., Winery is the value restriction on the hasMaker property on the class Wine)
Enumerations – lists of allowable individuals or data elements
Combinations of the above that include both restrictions and boolean class expressions (union – logical or, intersection – logical and, complement – logical not)
Copyright © 2013 Thematix Partners LLC + Class expression restricting all values for a given property 69 69
* courtesy Azalea Society of America
Azaleas are members of the set of flowering plants whose bloom color must be either an RHSColor (Royal Horticultural Society) or ASAColor (Azalea Society of America)
Copyright © 2013 Thematix Partners LLC + And the OWL for that …
* courtesy Azalea Society of America Copyright © 2013 Thematix Partners LLC + Another typical pattern combining restrictions & boolean connectives 71 71
Use of equivalence expressions like this, describing RHSFloweringPlantType as a flowering plant and something whose bloom colors must be from the set of colors defined by the Royal Horticultural Society is a common pattern
Copyright © 2013 Thematix Partners LLC + And the corresponding OWL for that …
72 72
Copyright © 2013 Thematix Partners LLC + Class expression restricting some & exact values for a given property 73 73
Copyright © 2013 Thematix Partners LLC + And the OWL for that …
Copyright © 2013 Thematix Partners LLC + ...
Copyright © 2013 Thematix Partners LLC + Individuals and data ranges
An individual (instance, object in other paradigms) 76 76 Any class that an individual is a member of, or is an individual of, is a type of the individual Any superclass of a class is an ancestor of (or type of) the individual
Specify property values for the individual Property values should conform to the constraints such as range, value type, cardinality restrictions, etc.
Enumerated classes & data ranges are commonly used to specify the complete set of valid values for a particular property
Copyright © 2013 Thematix Partners LLC + Example enumerated class of individuals
77 77
Copyright © 2013 Thematix Partners LLC + Complex data ranges & restrictions
78 78
Aggregating datatype restrictions via an intersection to specify the average size of an Azalea in the landscape.
Copyright © 2013 Thematix Partners LLC + New features in OWL 2
79 79 New property constructs Reflexive, irreflexive, & asymmetric properties Property chains Disjoint properties Keys Self-reflexive properties Qualified cardinality restrictions Negative property assertions
New class axioms Disjoint unions Disjoint classes
Copyright © 2013 Thematix Partners LLC & McGuinness Associates + More new features
Extended datatype handling 80 80 Better support for XML Schema Datatypes New datatypes for OWL specifically (owl:real, owl:rational, rdf:PlainLiteral) Custom datatype definition & use of xsd facets / datatype restrictions
New data range restrictions Intersections, unions, complements
Support for punning Limited support for a particular element to be defined as both a class & individual, for example
Improved support for annotations (e.g., metadata about ontologies, provenance, transformation detail, etc.)
See http://www.w3.org/TR/owl2-new-features/ & http://www.w3.org/TR/owl2-quick-reference/ for detail
Current work specifically focused on provenance: http://www.w3.org/2011/prov/wiki/Main_Page
Copyright © 2013 Thematix Partners LLC & McGuinness Associates + Rules of Thumb
81 81
Cycles are common in many KR systems, though rarely “a good thing” Cycles are disallowed by some tools because they prohibit “code generation”, export -- including RDF/OWL Classes A, B, and C have equivalent sets of instances By many definitions, A, B, and C are equivalent Use owl:equivalentClass instead of creating cycles
Copyright © 2013 Thematix Partners LLC & McGuinness Associates + Class hierarchy analysis
82 82
Siblings should be specified at roughly the same level of generality -- compare to section and subsections in a book Copyright © 2013 Thematix Partners LLC & McGuinness Associates + More on class definition analysis
83 Classes that have single subclasses may be incompletely 83 defined, unless additional children are specified in subordinate modules
Subclasses of a class typically have more detailed definitions Additional properties Constraints/restrictions on inherited properties Participate in further qualified relations Compare to bullets in a bulleted list
If a class has a large number of subclasses, it may be useful to define intermediate levels For wine, for example there are natural groupings around wine color If no natural classification exists, the long list may be appropriate
Copyright © 2013 Thematix Partners LLC & McGuinness Associates + Inheritance, naming, synonyms
A “wine” is not a subclass of “wines” 84 84
A particular vintage should be classified as an instance of the class Wines
Class names should be either all singular or all Class plural Synonymous names for the same concept should be modeled as alternate designations, not as instance-of unique classes (in the same ontology) Instance Many systems & standards facilitate synonymous MariettaOldVinesRed term representation (e.g., ISO 1087) OWL allows defining necessary and sufficiency condition definitions thereby allowing synonym definitions to be “first class” terms (as appropriate, through equivalence / same as relations)
Copyright © 2013 Thematix Partners LLC & McGuinness Associates + Class vs. property value
85 85
Are concepts with distinct property values used in restrictions on other properties?
How important is the distinction for the domain?
Class definitions for most domains should be fairly stable – i.e., they should not change frequently once the definitions are established and individuals created
Copyright © 2013 Thematix Partners LLC & McGuinness Associates + Class vs. individual
86 86
Individuals are the most specific entities in an ontology
If concepts form a natural hierarchy, represent them as classes
If they might have individuals, represent them as classes
Copyright © 2013 Thematix Partners LLC & McGuinness Associates + Limiting scope
87 87 An ontology should not contain all the possible information about the domain No need to specialize or generalize more than the application requires No need to include all possible properties of a class • Only the most salient properties • Only the properties that the application requires Ontologies of wine, food, and their pairings probably will not include details such as: Bottle size (half bottle, full bottle, magnum, …) Label color Wine bottle color (green, amber, …) Individual plants and their location in a historic garden Azalea indica 'Alaska' (Rutherfordiana hybrid) might be a class or might be an individual, depending on the use case and application requirements
Copyright © 2013 Thematix Partners LLC & McGuinness Associates + Why UML for Ontology Modeling?
88 88
A little review: Every semi-trailer truck has at least 3 axles.
(∀ x)(((SemiTrailerTruck(x) ∧ (∃ y)(SemiTrailer(y) ∧ (hasPart (x,y))) ∧ (SemiTrailerTruck(x) ∧ (∃ z)(TractorUnit(z) ∧ (hasPart (x,z)))) ⊃ (∃ s)(set(s) ∧ (count(s,(≥3)) ∧ (∀ w)(member(w,s) ⊃ (Axle(w) ∧ hasPart(x,w))) )).
Copyright © 2013 Thematix Partners LLC + XML angle brackets can be equally difficult to read
89 89
Copyright © 2013 Thematix Partners LLC + Editors such as Protégé are better …
90 90
Copyright © 2013 Thematix Partners LLC + As complexity increases, it can be difficult to follow relationships … 91 91
Copyright © 2013 Thematix Partners LLC + And it’s worse with individuals
92 92
Copyright © 2013 Thematix Partners LLC + UML’s well-known graphical notation is more accessible to many 93 93
Copyright © 2013 Thematix Partners LLC + A little more background …
94 94
UML provides a graphical notation, but OWL & UML are very different languages Language mapping from OWL to UML only covers a fraction of the UML language – to logical (class) diagrams Key distinctions: • Properties in OWL are first-class citizens, second class in UML (meaning, it’s difficult to map OWL properties directly to UML properties or associations) • UML supports n-ary relations whereas in OWL, properties are typically binary • OWL uses true set theoretic concepts (intersection, union, complement, etc.), where UML has historically been less formal • Although UML 2.5 semantics are closer to OWL, many practitioners don’t use the set theoretic features
This is overly simplified – the mapping is not straightforward, but the benefits of having a graphical notation are acknowledged in the W3C OWL 2 community.
Copyright © 2013 Thematix Partners LLC + UML/MOF and KR Together
95 95 MOF technology streamlines the mechanics of managing models as XML documents, Java objects, CORBA objects Knowledge Representation supports reasoning about resources Supports semantic alignment among differing vocabularies and nomenclatures Enables consistency checking and model validation, business rule analysis Allows us to ask questions over multiple resources that we could not answer previously Enables policy-driven applications to leverage existing knowledge and policies to solve business problems Detect inconsistent financial transactions Support business policy enforcement Facilitate next generation network management and security applications while integrating with existing RDBMS and OLAP data stores MOF provides no help with reasoning KR is not focused on the mechanics of managing models or metadata Complementary technologies – despite some overlap
Copyright © 2013 Thematix Partners LLC + Bridging KR and MDA
96 96
Copyright © 2013 Thematix Partners LLC + Metadata Management Scenarios
97 97
Copyright © 2013 Thematix Partners LLC + Ontology Definition Metamodel (ODM)
98 ODM is Object Management Group’s standard for model driven ontology 98 development (adopted in October 2006, finalized in May 2009) – available at http://www.omg.org/spec/ODM/1.0/
A family of metamodels & profiles that enable model interchange, ontology development in UML 2
Grounded in formal logic enabling reasoning engines to understand, validate, and apply ontologies developed using the ODM
Mappings to other OMG standards are either in work or under consideration, including
Information Management Metamodel (IMM) for exchange of ER, logical & physical database models, use of database schema for ontology development
SysML for exchange of systems engineering models, use of SysML models as a basis for ontology development, use of standard vocabularies for systems design
BPMN/BMM for use of standardized business vocabularies in business process modeling
Production Rule Representation (PRR), Semantics for Business Vocabularies and Rules (SBVR) for rule interchange – draft mapping from SBVR to OWL via an ontology represented in UML/ODM and OWL will be available as an IBM Technical Report shortly, with the mapping ontology made open source on code.google. com
Copyright © 2013 Thematix Partners LLC + Next Steps at OMG
W3C is moving the ball forward on a number of relevant fronts: RDF 1.1 99 99 (simplification, bug fixing, provenance), OWL 2, etc. Next edition of ODM (ODM 1.1) will support both the changes proposed for RDF 1.1 (RDF Source, RDF Dataset, literal simplification, etc.,) and OWL 2 RFP to support APIs for knowledge base access (API4KBs) – submissions will reuse ODM RDF and OWL metamodels Initial submission effort is underway Focus is on an interoperable framework for integration of Semantic Web based knowledge bases and reasoners with other applications including rule engines, text and data mining, machine learning, analytics Development of critical vocabularies as ontologies, including Date Time Vocabulary – currently supports SBVR, OCL, CL/CLIF, and mapping to OWL is in work Information Exchange Framework (IEF) Packaging Policy Vocabulary (IEPPV) Financial Industry Business Ontology (FIBO)
Copyright © 2013 Thematix Partners LLC + Relationship to Other Standards
100100
Update to support OWL 2 is underway -- ODM 1.1 revision planned for June 2013, including support for OWL 2 and RDF 1.1 CL Metamodel is identical to the UML diagrams in ISO 24707; revision to support revisions to the ISO standard are in work, mainly to module-related concepts High degree of synergy between ODM and Topic Maps ISO 13250 working group Current work in ISO JTC1 SC32 to update ISO 11179 (Metadata Registration) references ODM; also addressing alignment with SKOS (Simple Knowledge Organization System) and Dublin Core All ODM metamodels are referenced and used in ISO CD 19763 (MMF – Metamodel Framework, Model Registry specification)
Copyright © 2013 Thematix Partners LLC + Additional Metadata Standards for Definitions & Registries 101101 A number of commercial and government taxonomies for document-related asset management extend Dublin Core Metadata Terms (DCMI, http://www.dublincore.org/ ) Simple Knowledge Organization System (W3C, http://www.w3.org/TR/skos-reference/ Common approach to metadata is to reuse & extend these vocabularies where applicable Some (typically large) organizations also extend ISO 11179-3 Metadata Registry, ISO 19763 Model Registry standards as appropriate JPL’s planetary science data store (PDS) uses ISO 11179 Edition 2, may be updated to support emerging Edition 3, for example OMG Common Terminology Services 2 (CTS2) uses a combination of Dublin Core, SKOS, and ISO 11179 as a basis for term registration (adopted June 2011) Copyright © 2013 Thematix Partners LLC + Part 3: Putting It All Together
Syntax Checking 102102 Consistency Checking Instance Data Analysis & Evaluation Services Example Applications Demo – Visual Ontology Modeler (VOM) Questions
Copyright © 2013 Thematix Partners LLC + Syntax checking
For RDF & OWL Ontologies 103103 RDF syntax checking, graph visualization
• W3C RDF Validator (http://www.w3.org/RDF/Validator/)
• Jena API & Toolkit (http://jena.sourceforge.net/) OWL syntax checking, OWL dialect determination
• OWL Consistency Checker (http://clarkparsia.com/pellet/, also provides full OWL 2 DL reasoning capabilities)
• OWL 2 Validator (Univ. of Manchester, http://owl.cs.manchester.ac.uk/validator/ )
• Protégé OWL (http://protege.stanford.edu/)
• Jena API & Toolkit (http://jena.sourceforge.net/)
Every tool provides unique capabilities; sophisticated projects may require multiple approaches
Tools listed are open source, commercial options are also available
Copyright © 2013 Thematix Partners LLC & McGuinness Associates + Consistency checking and analysis
Requirements are typically application specific 104104 RDF vocabularies should be checked by an RDF validator or rule engine Jena Semantic Web Framework - http://jena.sourceforge.net/ Pychinko, MindSwap’s Rete-based RDF-friendly rule engine – (CWM clone) http://www.mindswap.org/~katz/pychinko/ OWL Ontologies should be run through a consistency checking reasoner Pellet (open source, originally from Mindswap, supported by Clark & Parsia, LLC) – http://clarkparsia.com/pellet/, RacerPro – http://www.racer-systems.com/ FaCT++ – http://owl.man.ac.uk/factplusplus/ HermiT OWL Reasoner – http://www.hermit-reasoner.com/ KAON2 infrastructure for managing OWL-DL, SWRL, and F-Logic ontologies – http://kaon2.semanticweb.org/ VIStology's ConsVISor OWL Consistency checker – http://68.162.250.6:8080/consvisor/ OWL instance data may also be run through checking tools TW Instance data evaluation - http://onto.rpi.edu/demo/oie/ OOPS! (OntOlogy Pitfall Scanner!) ontology engineering tool available from the School of Computer Science at Universidad Politécnica de Madrid, UPM -- http://oeg-lia3.dia.fi.upm.es/oops/index-content.jsp can also provide helpful hints OntoClean methodology for ontology analysis – see http://en.wikipedia.org/wiki/OntoClean for links to the seminal papers on this
Copyright © 2013 Thematix Partners LLC & McGuinness Associates + Example process
105105
Pellet OWL DL Reasoner
Valid OWL (DL consistency checked, concept satisfiability checked)
TW Instance Data Evaluation
Valid OWL (FOL consistency checked, deductive closure)
Valid RDF/XML Documents Ontology Registry (Valid OWL Syntax Representation) & Library Application Environment
Ontologies should be checked to ensure consistency, limit potential for invalid conclusions
Copyright © 2013 Thematix Partners LLC & McGuinness Associates + Inconsistencies caused by distributed OWL data
106106 Wine ontology wine:Wine rdfs:subClassOf rdfs:subClassOf
wine:LateHarvest wine:EarlyHarvest owl:disjointWith
A new ontology New instance data
rdfs:subClassOf rdfs:subClassOf rdf:type rdf:type
wine:BadWineClass wi:BadWineInstance
Case1: semantic inconsistency Case2: semantic inconsistency caused by a new class. caused by a new instance. Copyright © 2013 Thematix Partners LLC & McGuinness Associates + TW OWL instance-data evaluation
107107 Motivation Objective metrics are needed to evaluate if semantic web instance data is ready for practical use Next generation Chimaera (Stanford Knowledge Systems Laboratory tool, late 1990’s – early 2000’s) for more diverse and more instance-oriented applications
Challenges Criteria for “ready for use” vary across applications Existing syntax and logical-consistency checking is not enough for applications using some standard practical assumptions (e.g. closed world, unique names, …)
Solution Extensible & customizable service-oriented architecture Integrated environment for evaluating issues beyond standard syntactic correctness and logical consistency
See http://onto.rpi.edu/demo/oie/
Copyright © 2013 Thematix Partners LLC & McGuinness Associates + Semantically-Enabled Business Applications
Use Cases 108108 • Call Center Operations to identify conflicting Service Advisories • Intelligence Analysis – supporting research operations • Semantically enhanced Fraud Detection • IP Content Publication & Management for Media
<
<
<
<
<
<
- Schema & Index Enhanced SearchEnhanced / - Policy KB Document Content Mention / Cross-Reference Document Archive Repository Semantically Publish / Publish Agent Subscribe, Preference/ Role
Copyright © 2013 Thematix Partners LLC & McGuinness Associates Organization and Management of Data to Support Automation 109109
Copyright © 2013 Thematix Partners LLC & McGuinness Associates + Model Driven Service Provisioning
GE Water and Process – InSight Remote Monitoring & Diagnostics application 110110 Cross-industry – Beverage, Chemical Processing, Commercial, Food, General Industrial, Hydrocarbon Processing, Life Sciences, Medical Dialysis, Microelectronics, Mining & Mineral Processing, Municipal, Pharmaceutical, Power, Primary Metals, Residential, Transportation
Cross-domain – Boiler Water Treatment, Cooling Water Treatment, Feedstock Flexibility Solutions, Fuel Flexibility Solutions, Mobile Water, Petrochemical Process Solutions, Process Separations, Water Recovery, Water Scarcity Relief
Common hardware, software, process foundational components
Common goals for service offerings, provisioning, reporting across industries & solutions – what was done and why, how the services were accomplished, how did the customer benefit, metrics
Solution includes conceptual information models representing concepts, services, processes, relationships across them, large domain-specific knowledge bases, web- based service deployment & data management
Assists GE customers in reducing water, energy & labor costs, improves water and process treatment programs
Within 6 months of deployment – over 200+ plants were licensed users
Copyright © 2013 Thematix Partners LLC & McGuinness Associates + Visual Ontology Modeler (VOM) Demo
111111
Copyright © 2013 Thematix Partners LLC 112112 Visual Ontology Modeling is a new and valuable method for the development of commercial and scientific ontologies.
Multiple diagrammatic “points of view” simplify understanding and maintenance of large, complex ontologies.
It bridges the gap between the Semantic Web and the world of UML modeling.
Copyright © 2013 Thematix Partners LLC 113113 + Acronym Soup
CL – ISO 24707 Common Logic: a family of first order logic languages, including Conceptual Graphs & Common Logic Interchange Format – a 114114 successor to the Knowledge Interchange Format (KIF), http://cl.tamu.edu/
DAML – DARPA Agent Mark-up Language, one of the primary languages leading to the development of OWL, http://www.daml.org/
DARPA – Defense Advanced Research Projects Agency, http://www.darpa.mil/
DL – Description Logics: a subset of first order logic, for which tractable & complete reasoning systems are available
Linked Data and RDFa, http://www.w3.org/standards/techs/rdfa#w3c_all
MDA – Model-Driven Architecture, http://www.omg.org/mda/
ODM – Ontology Definition Metamodel, http://www.omg.org/spec/ODM/1.0/
OWL – W3C Web Ontology Language, OWL 2 specifications, http://www.w3.org/standards/techs/owl#w3c_all
OWL-S – a set of OWL ontology components that extend the W3C OWL specifications to support Semantic Web Services, http://www.daml.org/services/owl-s/1.1/ Copyright © 2013 Thematix Partners LLC
+ More Acronym Soup
115115 PML – Proof Markup Language – Provenance Interlingua, www.inference-web.org
PRR – Production Rules Representation, http://www.omg.org/spec/PRR/1.0/
RIF – Rule Interchange Format, http://www.w3.org/standards/techs/rif#w3c_all
RDF – Resource Description Framework, http://www.w3.org/TR/rdf-concepts/
Semantic Annotations for WSDL and XML (SAWSDL), http://www.w3.org/standards/techs/sawsdl#w3c_all
Simple Knowledge Organization System (SKOS), http://www.w3.org/standards/techs/skos#w3c_all
SPARQL – Semantic Web Query Language, http://www.w3.org/standards/techs/sparql#w3c_all
Semantic Web Rule Language (SWRL), http://www.w3.org/Submission/SWRL/
Copyright © 2013 Thematix Partners LLC