Baudoinia, a New Genus to Accommodate Torula Compniacensis
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Based on a Newly-Discovered Species
A peer-reviewed open-access journal MycoKeys 76: 1–16 (2020) doi: 10.3897/mycokeys.76.58628 RESEARCH ARTICLE https://mycokeys.pensoft.net Launched to accelerate biodiversity research The insights into the evolutionary history of Translucidithyrium: based on a newly-discovered species Xinhao Li1, Hai-Xia Wu1, Jinchen Li1, Hang Chen1, Wei Wang1 1 International Fungal Research and Development Centre, The Research Institute of Resource Insects, Chinese Academy of Forestry, Kunming 650224, China Corresponding author: Hai-Xia Wu ([email protected], [email protected]) Academic editor: N. Wijayawardene | Received 15 September 2020 | Accepted 25 November 2020 | Published 17 December 2020 Citation: Li X, Wu H-X, Li J, Chen H, Wang W (2020) The insights into the evolutionary history of Translucidithyrium: based on a newly-discovered species. MycoKeys 76: 1–16. https://doi.org/10.3897/mycokeys.76.58628 Abstract During the field studies, aTranslucidithyrium -like taxon was collected in Xishuangbanna of Yunnan Province, during an investigation into the diversity of microfungi in the southwest of China. Morpho- logical observations and phylogenetic analysis of combined LSU and ITS sequences revealed that the new taxon is a member of the genus Translucidithyrium and it is distinct from other species. Therefore, Translucidithyrium chinense sp. nov. is introduced here. The Maximum Clade Credibility (MCC) tree from LSU rDNA of Translucidithyrium and related species indicated the divergence time of existing and new species of Translucidithyrium was crown age at 16 (4–33) Mya. Combining the estimated diver- gence time, paleoecology and plate tectonic movements with the corresponding geological time scale, we proposed a hypothesis that the speciation (estimated divergence time) of T. -
Black Fungal Extremes
Studies in Mycology 61 (2008) Black fungal extremes Edited by G.S. de Hoog and M. Grube CBS Fungal Biodiversity Centre, Utrecht, The Netherlands An institute of the Royal Netherlands Academy of Arts and Sciences Black fungal extremes STUDIE S IN MYCOLOGY 61, 2008 Studies in Mycology The Studies in Mycology is an international journal which publishes systematic monographs of filamentous fungi and yeasts, and in rare occasions the proceedings of special meetings related to all fields of mycology, biotechnology, ecology, molecular biology, pathology and systematics. For instructions for authors see www.cbs.knaw.nl. EXECUTIVE EDITOR Prof. dr Robert A. Samson, CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail: [email protected] LAYOUT EDITOR S Manon van den Hoeven-Verweij, CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail: [email protected] Kasper Luijsterburg, CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail: [email protected] SCIENTIFIC EDITOR S Prof. dr Uwe Braun, Martin-Luther-Universität, Institut für Geobotanik und Botanischer Garten, Herbarium, Neuwerk 21, D-06099 Halle, Germany. E-mail: [email protected] Prof. dr Pedro W. Crous, CBS Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail: [email protected] Prof. dr David M. Geiser, Department of Plant Pathology, 121 Buckhout Laboratory, Pennsylvania State University, University Park, PA, U.S.A. 16802. E-mail: [email protected] Dr Lorelei L. Norvell, Pacific Northwest Mycology Service, 6720 NW Skyline Blvd, Portland, OR, U.S.A. -
Molecular Phylogenetic Studies on the Lichenicolous Xanthoriicola Physciae
GRLLPDIXQJXV IMA FUNGUS · VOLUME 2 · NO 1: 97–103 Molecular phylogenetic studies on the lichenicolous Xanthoriicola physciae ARTICLE reveal Antarctic rock-inhabiting fungi and Piedraia species among closest relatives in the Teratosphaeriaceae Constantino Ruibal1$QD00LOODQHVDQG'DYLG/+DZNVZRUWK 1'HSDUWDPHQWRGH%LRORJtD9HJHWDO,,)DFXOWDGGH)DUPDFLD8QLYHUVLGDG&RPSOXWHQVHGH0DGULG3OD]D5DPyQ\&DMDO0DGULG6SDLQ 'HSDUWDPHQWRGH%LRORJtD\*HRORJtD(6&(78QLYHUVLGDG5H\-XDQ&DUORV0yVWROHV0DGULG6SDLQ 'HSDUWPHQWRI%RWDQ\7KH1DWXUDO+LVWRU\0XVHXP&URPZHOO5RDG/RQGRQ6:%'8.FRUUHVSRQGLQJDXWKRUHPDLOGKDZNVZRUWK# QKPDFXN Abstract: The phylogenetic placement of the monotypic dematiaceous hyphomycete genus Xanthoriicola Key words: ZDVLQYHVWLJDWHG6HTXHQFHVRIWKHQ/68UHJLRQZHUHREWDLQHGIURPVSHFLPHQVRIX. physciae, which Ascomycota IRUPHGDVLQJOHFODGHVXSSRUWHGERWKE\SDUVLPRQ\ DQGPD[LPXPOLNHOLKRRG ERRWVWUDSV Capnodiales DQG%D\HVLDQ3RVWHULRU3UREDELOLWLHV 7KHFORVHVWUHODWLYHVLQWKHSDUVLPRQ\DQDO\VLVZHUHVSHFLHV Friedmanniomyces of Piedraria, while in the Bayesian analysis they were those of Friedmanniomyces7KHVHWKUHHJHQHUD hyphomycetes along with species of Elasticomyces, Recurvomyces, TeratosphaeriaDQGVHTXHQFHVIURPXQQDPHGURFN lichenicolous fungi LQKDELWLQJIXQJL 5,) ZHUHDOOPHPEHUVRIWKHVDPHPDMRUFODGHZLWKLQCapnodiales with strong support Piedrariaceae in both analyses, and for which the family name Teratosphaeriaceae can be used pending further studies rock inhabiting fungi RQDGGLWLRQDOWD[D Article info:6XEPLWWHG0D\ $FFHSWHG0D\3XEOLVKHG-XQH INTRODUCTION RI WKH FROODUHWWH RI WKH FRQLGLRJHQRXV -
Multilocus Dna Sequencing of the Whiskey Fungus Reveals a Continental-Scale Speciation Pattern
Persoonia 37, 2016: 13–20 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158516X689576 Multilocus DNA sequencing of the whiskey fungus reveals a continental‐scale speciation pattern J.A. Scott1,2, J.O. Ewaze1,2, R.C. Summerbell1,2, Y. Arocha-Rosete 2, A. Maharaj 2, Y. Guardiola2, M. Saleh2, B. Wong2, M. Bogale3, M.J. O’Hara3, W.A. Untereiner3 Key words Abstract Baudoinia was described to accommodate a single species, B. compniacensis. Known as the ‘whiskey fungus’, this species is the predominant member of a ubiquitous microbial community known colloquially as ‘ware- Dothideomycetes house staining’ that develops on outdoor surfaces subject to periodic exposure to ethanolic vapours near distilleries Extremophilic fungi and bakeries. Here we examine 19 strains recovered from environmental samples near industrial settings in North microcolonial fungi America, South America, the Caribbean, Europe and the Far East. Molecular phylogenetic analysis of a portion of molecular phylogenetics the nucLSU rRNA gene confirms that Baudoinia is a monophyletic lineage within the Teratosphaeriaceae (Capno warehouse staining diales). Multilocus phylogenetic analysis of nucITS rRNA (ITS1-5.8S-ITS2) and partial nucLSU rRNA, beta-tubulin (TUB) and elongation factor 1-alpha (TEF1) gene sequences further indicates that Baudoinia consists of five strongly supported, geographically patterned lineages representing four new species (viz. Baudoinia antilliensis, B. caledoniensis, B. orientalis and B. panamericana). Article info Received: 20 May 2015; Accepted: 12 July 2015; Published: 17 September 2015. INTRODUCTION Baudoinia compniacensis grows primarily outdoors (Auger- Barreau 1966), typically on ethanol-exposed materials that are Dark staining on walls, roof tiles and vegetation in proximity to subject to cycles of stress from temperature and drought (Scott spirit maturation warehouses was first documented by Richon et al. -
Ecology Drives the Distribution of Specialized Tyrosine Metabolism Modules in Fungi
GBE Ecology Drives the Distribution of Specialized Tyrosine Metabolism Modules in Fungi George H. Greene1, Kriston L. McGary1, Antonis Rokas1,*, and Jason C. Slot1,2 1Department of Biological Sciences, Vanderbilt University 2Department of Plant Pathology, The Ohio State University *Corresponding author: E-mail: [email protected]. Accepted: December 21, 2013 Abstract Gene clusters encoding accessory or environmentally specialized metabolic pathways likely play a significant role in the evolution of fungal genomes. Two such gene clusters encoding enzymes associated with the tyrosine metabolism pathway (KEGG #00350) have been identified in the filamentous fungus Aspergillus fumigatus.TheL-tyrosine degradation (TD) gene cluster encodes a functional module that facilitates breakdown of the phenolic amino acid, L-tyrosine through a homogentisate intermediate, but is also involved in the production of pyomelanin, a fungal pathogenicity factor. The gentisate catabolism (GC) gene cluster encodes a functional module likely involved in phenolic compound degradation, which may enable metabolism of biphenolic stilbenes in multiple lineages. Our investigation of the evolution of the TD and GC gene clusters in 214 fungal genomes revealed spotty distributions partially shaped by gene cluster loss and horizontal gene transfer (HGT). Specifically, a TD gene cluster shows evidence of HGT between the extremophilic, melanized fungi Exophiala dermatitidis and Baudoinia compniacensis, and a GC gene cluster shows evidence of HGT between Sordariomycete and Dothideomycete grass pathogens. These results suggest that the distribution of specialized tyrosine metabolism modules is influenced by both the ecology and phylogeny of fungal species. Key words: pathway evolution, phenolic compound, gene cluster, horizontal gene transfer. Introduction pairs that handle toxic intermediates (Slot and Rokas 2010; Takos and Rook 2012; McGary et al. -
Novel Species of Mycosphaerellaceae and Teratosphaeriaceae
Persoonia 23, 2009: 119–146 www.persoonia.org RESEARCH ARTICLE doi:10.3767/003158509X479531 Novel species of Mycosphaerellaceae and Teratosphaeriaceae P.W. Crous1, B.A. Summerell2, A.J. Carnegie3, M.J. Wingfield4, J.Z. Groenewald1 Key words Abstract Recent phylogenetic studies based on multi-gene data have provided compelling evidence that the Mycosphaerellaceae and Teratosphaeriaceae represent numerous genera, many of which can be distinguished Mycosphaerella based on their anamorph morphology. The present study represents the second contribution in a series describing Penidiella Eucalyptus from Phaeophleospora several novel species in different capnodealean genera defined in a previous study. Novelties on Australia include: Penidiella pseudotasmaniensis, P. tenuiramis, Phaeothecoidea intermedia, P. minutispora, Pseu Phaeothecoidea docercospora tereticornis, Readeriella angustia, R. eucalyptigena, R. menaiensis, R. pseudocallista, R. tasmanica, Pseudocercospora Teratosphaeria alboconidia, T. complicata, T. majorizuluensis, T. miniata, T. profusa, Zasmidium aerohyalinosporum Readeriella and Z. nabiacense, while Teratosphaeria xenocryptica is described on Eucalyptus from Chile. Novelties on other hosts Teratosphaeria include Phaeophleospora eugeniicola on Eugenia from Brazil, and Zasmidium nocoxi on twig litter from the USA. Zasmidium Article info Received: 4 June 2009; Accepted: 26 July 2009; Published: 29 October 2009. INTRODUCTION nine genera were defined in the Teratosphaeriaceae, namely Baudoinia, Capnobotryella, Catenulostroma, Devriesia, Peni The genus Mycosphaerella s.l. includes around 3 000 names diella, Phaeothecoidea, Readeriella, Staninwardia and Terato (Aptroot 2006), and together with its associated anamorph sphaeria. genera (especially Cercospora, Pseudocercospora, Septoria, The aim of this study was to apply the generic concepts estab- Ramularia, etc.) represents more than 10 000 species names lished in Crous et al. (2009b) for novel species collected from (Crous et al. -
Multilocus DNA Sequencing of the Whiskey Fungus Reveals a Continental‐Scale Speciation Pattern J.A
Persoonia 37, 2016: 13–20 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158516X689576 Multilocus DNA sequencing of the whiskey fungus reveals a continental‐scale speciation pattern J.A. Scott1,2, J.O. Ewaze1,2, R.C. Summerbell1,2, Y. Arocha-Rosete 2, A. Maharaj 2, Y. Guardiola2, M. Saleh2, B. Wong2, M. Bogale3, M.J. O’Hara3, W.A. Untereiner3 Key words Abstract Baudoinia was described to accommodate a single species, B. compniacensis. Known as the ‘whiskey fungus’, this species is the predominant member of a ubiquitous microbial community known colloquially as ‘ware- Dothideomycetes house staining’ that develops on outdoor surfaces subject to periodic exposure to ethanolic vapours near distilleries Extremophilic fungi and bakeries. Here we examine 19 strains recovered from environmental samples near industrial settings in North microcolonial fungi America, South America, the Caribbean, Europe and the Far East. Molecular phylogenetic analysis of a portion of molecular phylogenetics the nucLSU rRNA gene confirms that Baudoinia is a monophyletic lineage within the Teratosphaeriaceae (Capno warehouse staining diales). Multilocus phylogenetic analysis of nucITS rRNA (ITS1-5.8S-ITS2) and partial nucLSU rRNA, beta-tubulin (TUB) and elongation factor 1-alpha (TEF1) gene sequences further indicates that Baudoinia consists of five strongly supported, geographically patterned lineages representing four new species (viz. Baudoinia antilliensis, B. caledoniensis, B. orientalis and B. panamericana). Article info Received: 20 May 2015; Accepted: 12 July 2015; Published: 17 September 2015. INTRODUCTION Baudoinia compniacensis grows primarily outdoors (Auger- Barreau 1966), typically on ethanol-exposed materials that are Dark staining on walls, roof tiles and vegetation in proximity to subject to cycles of stress from temperature and drought (Scott spirit maturation warehouses was first documented by Richon et al. -
Unravelling <I>Mycosphaerella</I>
Persoonia 23, 2009: 99–118 www.persoonia.org RESEARCH ARTICLE doi:10.3767/003158509X479487 Unravelling Mycosphaerella: do you believe in genera? P.W. Crous1, B.A. Summerell 2, A.J. Carnegie 3, M.J. Wingfield 4, G.C. Hunter 1,4, T.I. Burgess 4,5, V. Andjic 5, P.A. Barber 5, J.Z. Groenewald 1 Key words Abstract Many fungal genera have been defined based on single characters considered to be informative at the generic level. In addition, many unrelated taxa have been aggregated in genera because they shared apparently Cibiessia similar morphological characters arising from adaptation to similar niches and convergent evolution. This problem Colletogloeum is aptly illustrated in Mycosphaerella. In its broadest definition, this genus of mainly leaf infecting fungi incorporates Dissoconium more than 30 form genera that share similar phenotypic characters mostly associated with structures produced on Kirramyces plant tissue or in culture. DNA sequence data derived from the LSU gene in the present study distinguish several Mycosphaerella clades and families in what has hitherto been considered to represent the Mycosphaerellaceae. In some cases, Passalora these clades represent recognisable monophyletic lineages linked to well circumscribed anamorphs. This association Penidiella is complicated, however, by the fact that morphologically similar form genera are scattered throughout the order Phaeophleospora (Capnodiales), and for some species more than one morph is expressed depending on cultural conditions and Phaeothecoidea media employed for cultivation. The present study shows that Mycosphaerella s.s. should best be limited to taxa Pseudocercospora with Ramularia anamorphs, with other well defined clades in the Mycosphaerellaceae representing Cercospora, Ramularia Cercosporella, Dothistroma, Lecanosticta, Phaeophleospora, Polythrincium, Pseudocercospora, Ramulispora, Readeriella Septoria and Sonderhenia. -
Unravelling Mycosphaerella: Do You Believe in Genera?
Persoonia 23, 2009: 99–118 www.persoonia.org RESEARCH ARTICLE doi:10.3767/003158509X479487 Unravelling Mycosphaerella: do you believe in genera? P.W. Crous1, B.A. Summerell 2, A.J. Carnegie 3, M.J. Wingfield 4, G.C. Hunter 1,4, T.I. Burgess 4,5, V. Andjic 5, P.A. Barber 5, J.Z. Groenewald 1 Key words Abstract Many fungal genera have been defined based on single characters considered to be informative at the generic level. In addition, many unrelated taxa have been aggregated in genera because they shared apparently Cibiessia similar morphological characters arising from adaptation to similar niches and convergent evolution. This problem Colletogloeum is aptly illustrated in Mycosphaerella. In its broadest definition, this genus of mainly leaf infecting fungi incorporates Dissoconium more than 30 form genera that share similar phenotypic characters mostly associated with structures produced on Kirramyces plant tissue or in culture. DNA sequence data derived from the LSU gene in the present study distinguish several Mycosphaerella clades and families in what has hitherto been considered to represent the Mycosphaerellaceae. In some cases, Passalora these clades represent recognisable monophyletic lineages linked to well circumscribed anamorphs. This association Penidiella is complicated, however, by the fact that morphologically similar form genera are scattered throughout the order Phaeophleospora (Capnodiales), and for some species more than one morph is expressed depending on cultural conditions and Phaeothecoidea media employed for cultivation. The present study shows that Mycosphaerella s.s. should best be limited to taxa Pseudocercospora with Ramularia anamorphs, with other well defined clades in the Mycosphaerellaceae representing Cercospora, Ramularia Cercosporella, Dothistroma, Lecanosticta, Phaeophleospora, Polythrincium, Pseudocercospora, Ramulispora, Readeriella Septoria and Sonderhenia. -
Three New Genera in a Dothidealean Clade of Extremotolerant Fungi
available online at www.studiesinmycology.org STUDIE S IN MYCOLOGY 61: 1–20. 2008. doi:10.3114/sim.2008.61.01 Drought meets acid: three new genera in a dothidealean clade of extremotolerant fungi L. Selbmann1*, G.S. de Hoog2,3, L. Zucconi1, D. Isola1, S. Ruisi1, A.H.G. Gerrits van den Ende2, C. Ruibal2, F. De Leo4, C. Urzì4 and S. Onofri1 1DECOS, Università degli Studi della Tuscia, Largo dell’Università, Viterbo, Italy; 2CBS Fungal Biodiversity Centre, P.O. Box 85167, NL-3508 AD Utrecht, The Netherlands; 3Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Kruislaan 315, NL-1098 SM Amsterdam, The Netherlands; 4Dipartimento di Scienze Microbiologiche, Genetiche e Molecolari, Università di Messina, Salita Sperone 31, I-98166 Messina, Italy *Correspondence: Laura Selbmann, [email protected] Abstract: Fungal strains isolated from rocks and lichens collected in the Antarctic ice-free area of the Victoria Land, one of the coldest and driest habitats on earth, were found in two phylogenetically isolated positions within the subclass Dothideomycetidae. They are here reported as new genera and species, Recurvomyces mirabilis gen. nov., sp. nov. and Elasticomyces elasticus gen. nov., sp. nov. The nearest neighbours within the clades were other rock-inhabiting fungi from dry environments, either cold or hot. Plant- associated Mycosphaerella-like species, known as invaders of leathery leaves in semi-arid climates, are also phylogenetically related with the new taxa. The clusters are also related to the halophilic species Hortaea werneckii, as well as to acidophilic fungi. One of the latter, able to grow at pH 0, is Scytalidium acidophilum, which is ascribed here to the newly validated genus Acidomyces. -
Phylogenetic Lineages in the Capnodiales
available online at www.studiesinmycology.org StudieS in Mycology 64: 17–47. 2009. doi:10.3114/sim.2009.64.02 Phylogenetic lineages in the Capnodiales P.W. Crous1, 2*, C.L. Schoch3, K.D. Hyde4, A.R. Wood5, C. Gueidan1, G.S. de Hoog1 and J.Z. Groenewald1 1CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD, Utrecht, The Netherlands; 2Wageningen University and Research Centre (WUR), Laboratory of Phytopathology, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands; 3National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 45 Center Drive, MSC 6510, Bethesda, Maryland 20892-6510, U.S.A.; 4School of Science, Mae Fah Luang University, Tasud, Muang, Chiang Rai 57100, Thailand; 5ARC – Plant Protection Research Institute, P. Bag X5017, Stellenbosch, 7599, South Africa *Correspondence: Pedro W. Crous, [email protected] Abstract: The Capnodiales incorporates plant and human pathogens, endophytes, saprobes and epiphytes, with a wide range of nutritional modes. Several species are lichenised, or occur as parasites on fungi, or animals. The aim of the present study was to use DNA sequence data of the nuclear ribosomal small and large subunit RNA genes to test the monophyly of the Capnodiales, and resolve families within the order. We designed primers to allow the amplification and sequencing of almost the complete nuclear ribosomal small and large subunit RNA genes. Other than the Capnodiaceae (sooty moulds), and the Davidiellaceae, which contains saprobes and plant pathogens, the order presently incorporates families of major plant pathological importance such as the Mycosphaerellaceae, Teratosphaeriaceae and Schizothyriaceae. The Piedraiaceae was not supported, but resolves in the Teratosphaeriaceae. -
Towards Incorporating Asexual Fungi in a Natural Classification: Checklist and Notes 2012–2016
Mycosphere 8(9): 1457–1555 (2017) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/8/9/10 Copyright © Guizhou Academy of Agricultural Sciences Towards incorporating asexual fungi in a natural classification: checklist and notes 2012–2016 Wijayawardene NN1,2, Hyde KD2, Tibpromma S2, Wanasinghe DN2, Thambugala KM2, Tian Q2, Wang Y3, Fu L1 1 Shandong Institute of Pomologe, Taian, Shandong Province, 271000, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3Department of Plant Pathology, Agriculture College, Guizhou University, Guiyang 550025, People’s Republic of China Wijayawardene NN, Hyde KD, Tibpromma S, Wanasinghe DN, Thambugala KM, Tian Q, Wang Y 2017 – Towards incorporating asexual fungi in a natural classification: checklist and notes 2012– 2016. Mycosphere 8(9), 1457–1555, Doi 10.5943/mycosphere/8/9/10 Abstract Incorporating asexual genera in a natural classification system and proposing one name for pleomorphic genera are important topics in the current era of mycology. Recently, several polyphyletic genera have been restricted to a single family, linked with a single sexual morph or spilt into several unrelated genera. Thus, updating existing data bases and check lists is essential to stay abreast of these recent advanes. In this paper, we update the existing outline of asexual genera and provide taxonomic notes for asexual genera which have been introduced since 2012. Approximately, 320 genera have been reported or linked with a sexual morph, but most genera lack sexual morphs. Keywords – Article 59.1 – Coelomycetous – Hyphomycetous – One name – Pleomorphism Introduction The recent outlines and monographs of different taxonomic groups (including artificial groups i.e.