Photochemical Rearrangements in Organic Synthesis and the Concept of the Photon As a Traceless Reagent Corentin Lefebvre, Norbert Hoffmann
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Contemporary Organosilicon Chemistry
Contemporary organosilicon chemistry Edited by Steve Marsden Generated on 05 October 2021, 02:13 Imprint Beilstein Journal of Organic Chemistry www.bjoc.org ISSN 1860-5397 Email: [email protected] The Beilstein Journal of Organic Chemistry is published by the Beilstein-Institut zur Förderung der Chemischen Wissenschaften. This thematic issue, published in the Beilstein Beilstein-Institut zur Förderung der Journal of Organic Chemistry, is copyright the Chemischen Wissenschaften Beilstein-Institut zur Förderung der Chemischen Trakehner Straße 7–9 Wissenschaften. The copyright of the individual 60487 Frankfurt am Main articles in this document is the property of their Germany respective authors, subject to a Creative www.beilstein-institut.de Commons Attribution (CC-BY) license. Contemporary organosilicon chemistry Steve Marsden Editorial Open Access Address: Beilstein Journal of Organic Chemistry 2007, 3, No. 4. School of Chemistry, University of Leeds, Leeds LS2 9JT, UK doi:10.1186/1860-5397-3-4 Email: Received: 06 February 2007 Steve Marsden - [email protected] Accepted: 08 February 2007 Published: 08 February 2007 © 2007 Marsden; licensee Beilstein-Institut License and terms: see end of document. Abstract Editorial for the Thematic Series on Contemporary Organosilicon Chemistry. The field of organosilicon chemistry has a rich and varied the 1990s, and equivalent to the number appearing in the much history, and has long since made the progression from chemical longer established field of organoboron chemistry -
The Use of Diarylethene Derivatives for Photo-Switching
Contribution The use of Diarylethene Derivatives for Photo-switching Kenji Matsuda Masahiro Irie Department of Chemistry and Biochemistry, Graduate School of Engineering, Kyushu University 1. Introduction The color change is attributable to the different electrical structures between the open-ring and closed-ring The process of reversible coloration changes induced isomers. In the open-ring isomers, free rotation exists at at least in one-direction by photoirradiation is referred to the ethene and aryl groups, so the isomer is non-planar as photochromism.1) The two isomers of photochromic com- and the π-electrons are localized in the two aryl groups. pounds differ in their geometrical and electrical structures. Furthermore, due to rotational energy barriers, two rota- These geometrical and electrical differences lead to tional isomers exist, namely, photo-reactive (anti-parallel) changes in the physical properties of the molecules, such and photo-inactive (parallel) (Figure 2).3) On the other hand, as their absorption and fluorescence spectra, refractive the closed ring isomer possesses high planarity, with index and electrical conductivity. Since the transformation asymmetrically arranged carbon atoms at the reaction site. between the isomers is induced by photoirradiation, It has a bond alternation polyene structure and a π-conju- optical-switching of the physical properties can be realized gated system spread throughout the molecule. Reflecting by using the photochromic units. on the differences between these geometric and electrical Diarylethene, which contains five-membered structures, their physical properties vary in many ways.4) heterocyclic rings, is well known as a photochromic com- In this review, some of the physical properties that were pound that is thermo-irreversible, has high-sensitivity and photo-switched by using photochromic diarylethene units, has fatigue resistance properties.2) Photochromic reactions i.e. -
Alginate and Silk Fibroin Based Technologies for Biosensing
ADVERTIMENT. Lʼaccés als continguts dʼaquesta tesi queda condicionat a lʼacceptació de les condicions dʼús establertes per la següent llicència Creative Commons: http://cat.creativecommons.org/?page_id=184 ADVERTENCIA. El acceso a los contenidos de esta tesis queda condicionado a la aceptación de las condiciones de uso establecidas por la siguiente licencia Creative Commons: http://es.creativecommons.org/blog/licencias/ WARNING. The access to the contents of this doctoral thesis it is limited to the acceptance of the use conditions set by the following Creative Commons license: https://creativecommons.org/licenses/?lang=en ALGINATE AND SILK FIBROIN BASED TECHNOLOGIES FOR BIOSENSING Augusto Márquez Maqueda Doctoral Thesis PhD in Chemistry Supervised by: Dr. Xavier Muñoz Berbel Dr. Carlos Domínguez Horna Tutored by: Dr. Julián Alonso Chamorro Departament de Química Facultat de Ciències 2020 The present thesis, entitled “Alginate and Silk Fibroin based Technologies for Biosensing”, is submitted by Augusto Márquez Maqueda as a partial fulfilment of the requirements for the Doctor of Philosophy degree in Chemistry. This thesis was carried out at the Institute of Microelectronics of Barcelona (IMB-CNM, CSIC), in the Group of Chemical Transducers (GTQ), under the supervision of Dr. Xavier Muñoz Berbel and Dr. Carlos Domínguez Horna. This thesis was supported by the Spanish R & D National Program (MEC Project TEC2014-54449-C3-1-R) and by the MICINN for the award of a research studentship within the FPI program (BES-2015-072946). With the approval of: Dr. Xavier Muñoz Berbel Dr. Carlos Domínguez Horna (Director) (Director) Dr. Julián Alonso Chamorro Augusto Márquez Márquez (Tutor) (Author) Agradecimientos Son muchas las personas a las que he de agradecer el hecho de haber podido realizar esta tesis. -
Design, Synthesis and Applications of Responsive Macrocycles
REVIEW ARTICLE https://doi.org/10.1038/s42004-020-00438-2 OPEN Design, synthesis and applications of responsive macrocycles ✉ Jingjing Yu1, Dawei Qi1 & Jianwei Li 1,2 1234567890():,; Inspired by the lock and key principle, the development of supramolecular macrocyclic chemistry has promoted the prosperous growth of host-guest chemistry. The updated induced-fit and conformation selection model spurred the emerging research on responsive macrocycles (RMs). This review introduces RMs, covering their design, synthesis and applications. It gives readers insight into the dynamic control of macrocyclic molecules and the exploration of materials with desired functions. ost–guest chemistry grew out of the lock and key principle by Emil Fischer. The principle Hwas formulated in 1894 by his discovery that glycolytic enzymes could selectively recognize stereoisomers of sugars. He hypothesized that only when the geometry of the enzyme (lock) was exactly complementary with that of the substrate (key) could the recognition take place and subsequently trigger the catalytic reactions. This model not only helps us understand the basics of biochemistry but also encourages chemists to explore functional host molecules acting like the ‘lock’. The first family of artificial host molecules, crown ethers, was discovered by Charles Pederson in 19671. They were cyclic molecules, and certain metallic atoms can be bonded in the middle of the ring of these molecules. Since then, supramolecular chemists have developed many macrocycles, including natural molecules like cyclodextrins2 and syn- thesized ones, including cucurbiturils3, pillararenes4, asararenes5, calixarenes6, resorcinarenes7 and other novel supramolecular macrocycles8–10. These macrocycles and their derivatives have been extensively investigated so chemists are able to achieve structure specific and highly selective recognition properties, which provide opportunities for exploring advanced applica- tions in sensing11, transport12, catalysis13 and drug/gene delivery14. -
Rylene Bisimide-Diarylethene Photochromic Systems for Non-Destructive Memory Read-Out
Rylene Bisimide-Diarylethene Photochromic Systems for Non-destructive Memory Read-out Dissertation zur Erlangung des naturwissenschaftlichen Doktorgrades der Julius-Maximilians-Universität Würzburg vorgelegt von Martin Berberich aus Amorbach Würzburg 2012 2 Eingereicht bei der Fakultät für Chemie und Pharmazie am: 10.08.2012 1. Gutachter: Prof. Dr. Frank Würthner 2. Gutachter: Prof. Dr. Markus Sauer der schriftlichen Arbeit 1. Prüfer: Prof. Dr. Frank Würthner 2. Prüfer: Prof. Dr. Markus Sauer 3. Prüfer: Prof. Dr. Tobias Brixner des öffentlichen Promotionskolloquiums Tag des öffentlichen Promotionskolloquiums: 29.10.2012 Doktorurkunde ausgehändigt am: _________________________ 3 4 Wer nichts als Chemie versteht, versteht auch die nicht recht. ca. 1790 Georg Christoph Lichtenberg (1742–1799) 5 List of Abbreviations List of Abbreviations A acceptor AIBN azobisisobutyronitrile APCI atmospheric-pressure chemical ionization BOC N-tert-butoxycarbonyl c closed form of photochrome CI conical intersection CT charge transfer CV cyclic voltammetry D donor DAE diarylethene DAEC closed form of diarylethene DAEO open form of diarylethene DBN 1,5 diazabicyclo[4.3.0]non-5-ene DCC N,N’-dicyclohexylcarbodiimide DCTB 2-[(2E)-3-(4-tert-butylphenyl)-2-methylprop-2-enylidene]malononitrile diglyme 1-methoxy-2-(2-methoxyethoxy)ethane DMF N,N-dimethylformamide DMSO dimethyl sulfoxide ESI electrospray ionization FRET Förster resonance energy transfer FWHM full width half maximum HOMO highest occupied molecular orbital HRMS high resolution mass spectrometry IC internal -
Organic Photochromic Compounds
Organic Photochromic Compounds Literature talk 11.07.2018 Lisa-Catherine Rosenbaum, Gaich group Universität Konstanz Introduction „Photochromism“ (from Greek phos = light, chroma = color; Hirshberg, 1950) : light-induced reversible transformation of a chemical species between two forms with different absorption spectra Photochromic action: • photo-induced darkening • thermally induced reverse reaction which leads to initial transparent state - from 1960s: glass lenses impregnated with silver halides and cuprous ions (photolytic decomposition of silver halide; reversible broad absorption band from UV to near IR) - nowadays: organic photochromic lenses H. Dürr, H. Bouas-Laurent, Photochromism: Molecules and Systems , Elsevier Science, 2003 . https://www.zeiss.com/vision-care/int/better-vision/lifestyle-fashion/fast-dark-fast-clear-modern-self-tinting-lenses.html , taken on 13.06.2018 2 11.07.2018 Organic Photochromic Compounds Universität Konstanz Historical Survey Photochromic phenomena first reported by J. Fritsche (1867): Chancel (1878), Hantzsch (1907): chromoisomerism E. ter Meer (1876): (structure isomerism of “chromo -dinitro salts”) Fainzil’berg (1975): reversible formation of K-salt of ethylnitrolic acid R. Hubbard, A. Kropf (1958): photoexcitation in the process of vision 1960s: development of physical methods (UV, IR, NMR, X-Ray, time-resolved and flash spectroscopy) and organic synthesis mechanistic and synthetic studies; limited potential applications (photodegradation), stagnation of research 1980s: fatigue-resistant photoswitches (spirooxazines and chromenes), fabrication and commercial application of photochromic lenses and other systems J. Fritsche, Comptes Rendus Acad. Sci. 1867 , 69 , 1035. E. t. Meer, Justus Liebigs Ann. Chem. 1876 , 181 , 1-22. H. A., Ber. Dt. Chem. Ges. 1907 , 40 , 1533-1555. V. I. Slovetskii, V. P. Balykin, O. -
Bio-Organic Mechanism Game – Simplistic Biochemical Structures and Simplistic Organic Reaction Mechanisms Are Used to Explain Common Biochemical Transformations
1 Bio-Organic Mechanism Game – Simplistic biochemical structures and simplistic organic reaction mechanisms are used to explain common biochemical transformations. Simplified biochemical molecules are presented first. Many biomolecules have a somewhat complex structure that makes it difficult to write out step by step mechanisms. However, if we simplify those structures to the essential parts necessary to explain the mechanistic chemistry of each step, it becomes much easier to consider each step through an important cycle. I have proposed possible simplified structures that are used in the later examples of biochem cycles and problems. The usual strategy in biochem cycles is to just write names, or perhaps, names and a structure. Occasionally a few mechanistic steps are suggested, but almost never is a detailed sequence of mechanistic steps provided. Since it is hard to find such detailed mechanistic steps anywhere (sometimes they are not known) our proposed steps are, of necessity, somewhat speculative. In this book we are not looking for perfection, which is not possible, but for sound organic logic that is consistent with the biochemical examples presented below. There is great satisfaction in blending organic knowledge with real life reactions that help explain how life works. In working through some of the problems, you may develop an alternative mechanism that is just as good, or even better than the one I have proposed. If you do, I hope you will share it with me and if an improved version of this book ever gets written I can include it the next edition (and give you credit). It is almost certain that I have made some errors and I would appreciate it if you would let me know about them. -
Photochromic Diarylethene As an Information Processing Unit: Magnetic and Electric Switching*
Pure Appl. Chem., Vol. 80, No. 3, pp. 555–561, 2008. doi:10.1351/pac200880030555 © 2008 IUPAC Photochromic diarylethene as an information processing unit: Magnetic and electric switching* Kenji Matsuda Department of Chemistry and Biochemistry, Graduate School of Engineering, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan Abstract: Photochromic compounds reversibly change not only the absorption spectra but also their geometrical and electronic structures. This principle can be applied for the photo- switching of the physical properties of the molecular materials. In particular, photoswitching of the flow of information through the molecule is interesting because information process- ing using molecular devices is attracting interest in the molecular electronics field. The photoswitchings of the magnetic exchange interaction and the electrical conductance using photochromic diarylethene are described. Keywords: photochromism; magnetism; exchange interaction; electric conductance; gold nanoparticles. INTRODUCTION Photochromism is a reversible phototransformation of a chemical species between two forms having different absorption spectra [1–4]. Photochromic compounds reversibly change not only the absorption spectra but also their geometrical and electronic structures. The geometrical and electronic structural changes induce some changes in physical properties, such as fluorescence, refractive index, polariz- ability, and electric conductivity. Diarylethenes with heterocyclic aryl groups are well known as thermally irreversible, highly sen- sitive, and fatigue-resistant photochromic compounds [5,6]. The photochromic reaction is based on a reversible transformation between an open-ring isomer with hexatriene structure and a closed-ring iso- mer with cyclohexadiene structure according to the Woodward–Hoffmann rule as shown in Fig. 1. While the open-ring isomer 1a is colorless in most cases, the closed-ring isomer 1b has the color of yel- low, red, or blue, depending on the molecular structure. -
Chapter 29 Information
Chapter 29 Information There are three types of organic reactions. 1. Polar reactions. These are of the SN1/SN2/EAS/etc. type; a nucleophile reacts with an electrophile, and both electrons in the new bond come from the nucleophile. 2. Radical reactions. A new bond is formed using one electron from each of the reactants. 3. Pericyclic reactions. The electrons in one or more reactants are reorganized in a cyclic manner. There are three major types. a. Electrocyclic. An intramolecular reaction in which a new sigma bond is formed between the ends of a conjugated pi system. The product is cyclic, with one more ring and one less pi bond than the starting material. These reactions are reversible. b. Cycloaddition. Two different molecules, each containing at least one pi bond, react to form a cyclic compound. Each loses a pi bond, and two new sigma bonds are formed. The Diels‐Alder reaction is a classic cycloaddition. c. Sigmatropic rearrangement. A sigma bond is broken, a new sigma bond is formed, and the pi bonds rearrange. Features of pericyclic reactions include: • They are concerted reactions. Therefore there is one transition state and no intermediate. • They are highly stereoselective (because they are concerted). • They are generally not affected by catalysts or by changes in the solvent. The configuration of the product is determined by: • The configuration of the starting material(s). • The number of pi electrons (whether conjugated pi bonds or lone pairs) in the reacting system. • Whether the reaction is done under thermal or photochemical conditions. o Photochemical: when the reactant absorbs light (usually indicated with hν). -
Saccharide Recognition : Boronic Acids As Receptors in Polymeric Networks
IBMT Saccharide Recognition – Boronic Acids as Receptors in Polymeric Networks Dissertation zur Erlangung des akademischen Grades „doctor rerum naturalium “ (Dr. rer. nat.) in der Wissenschaftsdisziplin Physikalische Chemie eingereicht an der Mathematisch-Naturwissenschaftlichen Fakultät der Universität Potsdam von Soeren Schumacher Potsdam, Februar 2011 Published online at the Institutional Repository of the University of Potsdam: URL http://opus.kobv.de/ubp/volltexte/2011/5286/ URN urn:nbn:de:kobv:517-opus-52869 http://nbn-resolving.de/urn:nbn:de:kobv:517-opus-52869 To my parents Acknowledgement During more than three years of research many inspiring discussions, fruitful collaborations and important friendships developed. Since “science” is a discipline in which team- work is essential, this is the place to express my gratitude to many people. They all contributed to this thesis in many different ways and just their support enabled me to write this thesis. I would like to express my gratitude to my doctoral supervisor Prof. Dr. Hans-Gerd Löhmannsröben for his support and for giving me the opportunity to do my doctorate in chemistry. My special thanks is directed to the mentor of the group “Biomimetic Materials and Systems” Prof. Dr. Frieder W. Scheller who acted as a scientific supervisor. I am thankful for many fruitful discussions, interesting new aspects and many corrections of my written thesis or manuscripts. Substantial guidance has also been given by Prof. Dr. Dennis G. Hall, University of Alberta, Edmonton. He gave me the chance to learn the chemistry of “boronic acids” in his lab and supported my work also after my return to Germany. -
Stereocontrol in Organic Synthesis Using Silicon-Containing Compounds
Stereocontrol in organic synthesis using silicon-containing compounds. Studies directed towards the synthesis of ebelactone A† Sarah C. Archibald, David J. Barden, Jérôme F. Y. Bazin, Ian Fleming,* Colin F. Foster, Ajay K. Mandal, Amit K. Mandal, David Parker, Ken Takaki, Anne C. Ware, Anne R. B. Williams and Anna B. Zwicky Department of Chemistry, Lensfield Road, Cambridge, UK CB2 1EW. E-mail: [email protected]; Fax: ϩ44 (0)1223 336362; Tel: ϩ44 (0)1223 336372 Received 24th December 2003, Accepted 5th February 2004 First published as an Advance Article on the web 5th March 2004 Several approaches to the synthesis of ebelactone A 2 are described, culminating in the synthesis of the benzenesulfonate of 2-epi-ebelactone A 161. All the approaches were based on three fragments A, B and C, originally defined in general terms in Scheme 1, but eventually used as the aldehyde 72, the allenylsilane 3 and the aldehyde 139, respectively. They were joined, first B with C, and then B؉C with A. In the main routes to fragments A and C, the relative stereochemistry was controlled by highly stereoselective enolate methylations 66 67, 68 69, and 135 136, in each case anti to an adjacent silyl group, and by a highly stereoselective hydroboration of an allylsilane 137 138, also anti to the silyl group. The hydroxyl groups destined to be on C-3 and C-11 were unmasked by silyl-to-hydroxy conversions 69 70 and 138 139 with retention of configuration. The fi Ј stereochemistry created in the coupling of fragment B to C was controlled by the stereospeci cally anti SE2 reaction between the enantiomerically enriched allenylsilane 3 and the aldehyde 139. -
Dual Wettability on Diarylethene Microcrystalline Surface Mimicking a Termite Wing
ARTICLE Corrected: Publisher Correction https://doi.org/10.1038/s42004-019-0192-6 OPEN Dual wettability on diarylethene microcrystalline surface mimicking a termite wing Ryo Nishimura 1, Kengo Hyodo1, Hiroyuki Mayama 2, Satoshi Yokojima3,4, Shinichiro Nakamura 4 & Kingo Uchida 1,4 1234567890():,; The termite wing has a specific property of wetting in contact with a water droplet: it adsorbs water mist, whereas larger water droplets are bounced on the surface. This is owing to the survival strategy of termites. Here, we reproduce the termite wing’s dual wettability by a photoinduced crystal growth technique. Upon UV irradiation to a microcrystalline surface of a mixture of two diarylethenes, two types of needle-shaped crystals of distinctly different sizes are observed to grow. The surface shows behavior akin to the termite wing’s dual wettability. The bouncing ability of a water droplet is attributed to the smaller-sized needle crystals, whereas the adhesive property is owing to the larger-sized ones, explaining the micro- structures of the termite wing. Considering dissipation energy and adhesion energy, the bouncing ability and dual wettability can be explained theoretically. The surface could potentially be used in water harvesting applications. 1 Department of Materials Chemistry, Ryukoku University, Seta, Otsu, Shiga 520-2194, Japan. 2 Department of Chemistry, Asahikawa Medical University, 2-1- 1-1 Midorigaoka–higashi, Asahikawa, Hokkaido 078-8510, Japan. 3 School of Pharmacy, Tokyo University of Pharmacy and Life Sciences, 1432-1 Horinouchi, Hachioji, Tokyo 192-0392, Japan. 4 RIKEN Cluster for Science, Technology and Innovation Hub, Nakamura Laboratory, 2-1 Hirosawa, Wako, Saitama 351- 0198, Japan.