Dwelling in Hydrothermal Sites of the North Mid-Atlantic Ridge
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Biogeographic Atlas of the Southern Ocean
Census of Antarctic Marine Life SCAR-Marine Biodiversity Information Network BIOGEOGRAPHIC ATLAS OF THE SOUTHERN OCEAN CHAPTER 5.3. ANTARCTIC FREE-LIVING MARINE NEMATODES. Ingels J., Hauquier F., Raes M., Vanreusel A., 2014. In: De Broyer C., Koubbi P., Griffiths H.J., Raymond B., Udekem d’Acoz C. d’, et al. (eds.). Biogeographic Atlas of the Southern Ocean. Scientific Committee on Antarctic Research, Cambridge, pp. 83-87. EDITED BY: Claude DE BROYER & Philippe KOUBBI (chief editors) with Huw GRIFFITHS, Ben RAYMOND, Cédric d’UDEKEM d’ACOZ, Anton VAN DE PUTTE, Bruno DANIS, Bruno DAVID, Susie GRANT, Julian GUTT, Christoph HELD, Graham HOSIE, Falk HUETTMANN, Alexandra POST & Yan ROPERT-COUDERT SCIENTIFIC COMMITTEE ON ANTARCTIC RESEARCH THE BIOGEOGRAPHIC ATLAS OF THE SOUTHERN OCEAN The “Biogeographic Atlas of the Southern Ocean” is a legacy of the International Polar Year 2007-2009 (www.ipy.org) and of the Census of Marine Life 2000-2010 (www.coml.org), contributed by the Census of Antarctic Marine Life (www.caml.aq) and the SCAR Marine Biodiversity Information Network (www.scarmarbin.be; www.biodiversity.aq). The “Biogeographic Atlas” is a contribution to the SCAR programmes Ant-ECO (State of the Antarctic Ecosystem) and AnT-ERA (Antarctic Thresholds- Ecosys- tem Resilience and Adaptation) (www.scar.org/science-themes/ecosystems). Edited by: Claude De Broyer (Royal Belgian Institute of Natural Sciences, Brussels) Philippe Koubbi (Université Pierre et Marie Curie, Paris) Huw Griffiths (British Antarctic Survey, Cambridge) Ben Raymond (Australian -
Guidelines for the Capture and Management of Digital Zoological Names Information Francisco W
Guidelines for the Capture and Management of Digital Zoological Names Information Francisco W. Welter-Schultes Version 1.1 March 2013 Suggested citation: Welter-Schultes, F.W. (2012). Guidelines for the capture and management of digital zoological names information. Version 1.1 released on March 2013. Copenhagen: Global Biodiversity Information Facility, 126 pp, ISBN: 87-92020-44-5, accessible online at http://www.gbif.org/orc/?doc_id=2784. ISBN: 87-92020-44-5 (10 digits), 978-87-92020-44-4 (13 digits). Persistent URI: http://www.gbif.org/orc/?doc_id=2784. Language: English. Copyright © F. W. Welter-Schultes & Global Biodiversity Information Facility, 2012. Disclaimer: The information, ideas, and opinions presented in this publication are those of the author and do not represent those of GBIF. License: This document is licensed under Creative Commons Attribution 3.0. Document Control: Version Description Date of release Author(s) 0.1 First complete draft. January 2012 F. W. Welter- Schultes 0.2 Document re-structured to improve February 2012 F. W. Welter- usability. Available for public Schultes & A. review. González-Talaván 1.0 First public version of the June 2012 F. W. Welter- document. Schultes 1.1 Minor editions March 2013 F. W. Welter- Schultes Cover Credit: GBIF Secretariat, 2012. Image by Levi Szekeres (Romania), obtained by stock.xchng (http://www.sxc.hu/photo/1389360). March 2013 ii Guidelines for the management of digital zoological names information Version 1.1 Table of Contents How to use this book ......................................................................... 1 SECTION I 1. Introduction ................................................................................ 2 1.1. Identifiers and the role of Linnean names ......................................... 2 1.1.1 Identifiers .................................................................................. -
Free-Living Marine Nematodes from San Antonio Bay (Río Negro, Argentina)
A peer-reviewed open-access journal ZooKeys 574: 43–55Free-living (2016) marine nematodes from San Antonio Bay (Río Negro, Argentina) 43 doi: 10.3897/zookeys.574.7222 DATA PAPER http://zookeys.pensoft.net Launched to accelerate biodiversity research Free-living marine nematodes from San Antonio Bay (Río Negro, Argentina) Gabriela Villares1, Virginia Lo Russo1, Catalina Pastor de Ward1, Viviana Milano2, Lidia Miyashiro3, Renato Mazzanti3 1 Laboratorio de Meiobentos LAMEIMA-CENPAT-CONICET, Boulevard Brown 2915, U9120ACF, Puerto Madryn, Argentina 2 Universidad Nacional de la Patagonia San Juan Bosco, sede Puerto Madryn. Boulevard Brown 3051, U9120ACF, Puerto Madryn, Argentina 3Centro de Cómputos CENPAT-CONICET, Boulevard Brown 2915, U9120ACF, Puerto Madryn, Argentina Corresponding author: Gabriela Villares ([email protected]) Academic editor: H-P Fagerholm | Received 18 November 2015 | Accepted 11 February 2016 | Published 28 March 2016 http://zoobank.org/3E8B6DD5-51FA-499D-AA94-6D426D5B1913 Citation: Villares G, Lo Russo V, Pastor de Ward C, Milano V, Miyashiro L, Mazzanti R (2016) Free-living marine nematodes from San Antonio Bay (Río Negro, Argentina). ZooKeys 574: 43–55. doi: 10.3897/zookeys.574.7222 Abstract The dataset of free-living marine nematodes of San Antonio Bay is based on sediment samples collected in February 2009 during doctoral theses funded by CONICET grants. A total of 36 samples has been taken at three locations in the San Antonio Bay, Santa Cruz Province, Argentina on the coastal littoral at three tidal levels. This presents a unique and important collection for benthic biodiversity assessment of Patagonian nematodes as this area remains one of the least known regions. -
(Stsm) Scientific Report
SHORT TERM SCIENTIFIC MISSION (STSM) SCIENTIFIC REPORT This report is submitted for approval by the STSM applicant to the STSM coordinator Action number: CA15219-45333 STSM title: Free-living marine nematodes from the eastern Mediterranean deep sea - connecting COI and 18S rRNA barcodes to structure and function STSM start and end date: 06/02/2020 to 18/3/2020 (short than the planned two months due to the Co-Vid 19 virus pandemic) Grantee name: Zoya Garbuzov PURPOSE OF THE STSM: My Ph.D. thesis is devoted to the population ecology of free-living nematodes inhabiting deep-sea soft substrates of the Mediterranean Levantine Basin. The success of the study largely depends on my ability to accurately identify collected nematodes at the species level, essential for appropriate environmental analysis. Morphological identification of nematodes at the species level is fraught with difficulties, mainly because of their relatively simple body shape and the absence of distinctive morphological characters. Therefore, a combination of morphological identification to genus level and the use of molecular markers to reach species identification is assumed to provide a better distinction of species in this difficult to identify group. My STSM host, Dr. Nikolaos Lampadariou, is an experienced taxonomist and nematode ecologist. In addition, I will have access to the molecular laboratory of Dr. Panagiotis Kasapidis. Both researchers are based at the Hellenic Center for Marine Research (HCMR) in Crete and this STSM is aimed at combining morphological taxonomy, under the supervision of Dr. Lampadariou, with my recently acquired experience in nematode molecular taxonomy for relating molecular identifiers to nematode morphology. -
Two New Species of Free-Living Marine Nematodes (Nematoda: Oncholaimida: Enchelidiidae) from Maemul Island, Korea
Zootaxa 3785 (3): 419–437 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2014 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3785.3.5 http://zoobank.org/urn:lsid:zoobank.org:pub:C160D221-D032-48C6-A8D0-11ED1AE1C7FE Two new species of free-living marine nematodes (Nematoda: Oncholaimida: Enchelidiidae) from Maemul Island, Korea JUNG–HO HONG & WONCHOEL LEE1 Department of Life Science, College of Natural Sciences, Hanyang University, Seoul 133–791, Korea 1Corresponding author. E-mail: [email protected] Abstract Two new species of the family Enchelidiidae Filipjev, 1918 were collected from marine sediments near Maemul Island in South Korea: a new species of Abelbolla Huang & Zhang, 2004 and a new species of Ledovitia Filipjev, 1927. Abelbolla maemulensis sp. nov. is characterized by its small size (1,493 × 38 µm, body length × maximum body diameter); the pres- ence of a circular amphid; the gubernacular apophysis with swollen distal tip; and the complex structure of the gubernac- ulum. It is close to Abelbolla huanghaiensis Huang & Zhang, 2004, but differs by the structure of gubernacular apophysis and body length (1,493 vs 2,303 µm). Ledovitia brevis sp. nov. can be separated from its congeners by its small size of body, the length of gubernacular apophysis, and the length of the spicules. It is close to Ledovitia pharetrata Wieser, 1953a, but differs by the length of the body (1,699 vs 2,640 µm) and the spicules (40 vs 100 µm). Key words: Abelbolla, Ledovitia, new species, morphology, taxonomy, South Korea Introduction About 7,000 species of free-living marine nematodes have been described (Appeltans et al. -
7.13 Order Desmodorida De Coninck, 1965
Alexei V. Tchesunov 7.13 Order Desmodorida De Coninck, 1965 Diagnosis . Chromadorea. Nematodes fixed with formol 7.13.1.1 Family Desmodoridae Filipjev, 1922 often look yellowish or brownish. Cuticle usually with Diagnosis : Desmodoroidea. Body cylindrical. Cuticle is distinct annulations, but in some species very finely distinctly annulated, without dots, but spines, fringes striated or even smooth; punctation may occur rarely. or longitudinal ornamentations may be present. No spe- Cephalic cuticle is often smooth. Anterior sensilla are cialized ambulatory setae at anterior and posterior body arranged in three separate circles, six inner labial papil- ends. Locomotion is sinuous, typical for nematodes. lae, six outer labial papillae and four cephalic setae. Six subfamilies: Desmodorinae Filipjev, 1922, Spirini- Amphideal fovea is ventrally coiled, usually oligo- or inae Gerlach & Murphy, 1965, Pseudonchinae Gerlach & unispiral. Cheilostom is equipped with twelve longitudi- Riemann, 1973, Stilbonematinae Cobb, 1936, Molgolaimi- nal ribs or rugae that, however, are not always distinct. nae Jensen, 1978, and Prodesmodorinae Lorenzen, 1981. There is a more or less pronounced dorsal tooth in the stegostoma, whereas subventral teeth are smaller or absent. Pharynx muscular, with more or less developed 7.13.1.1.1 Subfamily Desmodorinae Filipjev, 1922 posterior bulb. Ovaries are paired (rarely a single ante- rior ovary) and mostly antidromously reflexed (outstret- Diagnosis (after Decraemer & Smol 2006, Verschelde et al. ched in two families). Gubernaculum is usually devoid of 2006): Desmodoridae. Cuticle annulated except in head a dorsocaudal apophysis. region. Head region with thickened cuticle except in lip In the frame of the order, three first families are region and set off as a conspicuous cephalic capsule. -
Nematoda, Chromadorida, Selachinematidae) from the West Coast of Sweden and an Updated Phylogeny of Chromadoria
Marine Biodiversity (2020) 50:113 https://doi.org/10.1007/s12526-020-01129-w ORIGINAL PAPER Description of a new marine predatory nematode Latronema dyngi sp. nov. (Nematoda, Chromadorida, Selachinematidae) from the west coast of Sweden and an updated phylogeny of Chromadoria Mohammed Ahmed1 & Oleksandr Holovachov1 Received: 3 July 2020 /Revised: 8 October 2020 /Accepted: 15 October 2020 # The Author(s) 2020 Abstract A new nematode species, Latronema dyngi sp. nov., is described from Skagerrak off the west coast of Sweden with the type locality near Dyngö island. Latronema dyngi sp. nov. is characterized by multispiral amphideal fovea with circular outline, 0.2– 0.3 corresponding body diameters wide in males and 0.1–0.2 corresponding body diameters wide in females, 12 cuticular longitudinal ridges and 18–27 precloacal supplements in males. Latronema dyngi sp. nov. most closely resembles L. orcinum in terms of body length; demanian ratios a, b, c and c′; number of amphid turns in males; and the ratio of spicule length to cloacal body diameter. The two species can be differentiated by the number longitudinal ridges on the cuticle (12 for Latronema dyngi sp. nov. vs 20–22 for L. orcinum) and spicule length (65–78 μmforL. dyngi vs 60 for L. orcinum) and shape (weakly arcuate for L. dyngi sp. nov. vs strongly arcuate for L. orcinum). We also performed a maximum likelihood phylogenetic analysis on over 250 nematodes of the subclass Chromadoria based on their nearly full-length 18S rDNA sequences. In agreement with previous studies, our analysis supported Selachinematidae as a monophyletic group and placed Richtersia Steiner, 1916 within Desmodoridae Filipjev, 1922 or just outside of the main Desmodorida clade with the latter placement not well supported. -
Taxonomy Assignment Approach Determines the Efficiency of Identification of Metabarcodes in Marine Nematodes
Taxonomy assignment approach determines the efficiency of identification of metabarcodes in marine nematodes Oleksandr Holovachov1, Quiterie Haenel2, Sarah J. Bourlat3 and Ulf Jondelius1 1Department of Zoology, Swedish Museum of Natural History, Stockholm, Sweden 2Zoological Institute, University of Basel, Switzerland 3Department of Marine Sciences, University of Gothenburg, Sweden Abstract: Precision and reliability of barcode-based biodiversity assessment can be affected at several steps during acquisition and analysis of the data. Identification of barcodes is one of the crucial steps in the process and can be accomplished using several different approaches, namely, alignment-based, probabilistic, tree-based and phylogeny-based. Number of identified sequences in the reference databases affects the precision of identification. This paper compares the identification of marine nematode barcodes using alignment-based, tree-based and phylogeny-based approaches. Because the nematode reference dataset is limited in its taxonomic scope, barcodes can only be assigned to higher taxonomic categories, families. Phylogeny-based approach using Evolutionary Placement Algorithm provided the largest number of positively assigned metabarcodes and was least affected by erroneous sequences and limitations of reference data, comparing to alignment- based and tree-based approaches. Key words: biodiversity, identification, barcode, nematodes, meiobenthos. 1 1. Introduction Metabarcoding studies based on high throughput sequencing of amplicons from marine samples have reshaped our understanding of the biodiversity of marine microscopic eukaryotes, revealing a much higher diversity than previously known [1]. Early metabarcoding of the slightly larger sediment-dwelling meiofauna have mainly focused on scoring relative diversity of taxonomic groups [1-3]. The next step in metabarcoding: identification of species, is limited by the available reference database, which is sparse for most marine taxa, and by the matching algorithms. -
And Unexpected Placement of the Genus Molgolaimus Ditlevsen, 1921
Marine Biodiversity (2019) 49:2267–2280 https://doi.org/10.1007/s12526-019-00961-z ORIGINAL PAPER New nematode species from the continental slope of New Zealand (Chromadorea, Microlaimida, and Chromadorida), and unexpected placement of the genus Molgolaimus Ditlevsen, 1921 Daniel Leduc1 & Sujing Fu2 & Zeng Qi Zhao3 Received: 20 February 2019 /Revised: 3 April 2019 /Accepted: 16 April 2019 /Published online: 8 June 2019 # Senckenberg Gesellschaft für Naturforschung 2019 Abstract The current nematode classification comprises three primarily marine basal Chromadorean orders: the Microlaimida Leduc et al., 2018; Desmodorida De Coninck, 1965; and Chromadorida Chitwood, 1933. The phylogenetic placement of several taxa within these orders, however, is unclear due to the paucity of taxonomically informative morphological characters for high-level classification and is yet to be tested by molecular phylogenetic analyses due to the absence of molecular sequences. Here, we describe Molgolaimus kaikouraensis sp.nov.andAponema pseudotorosum sp. nov. from the continental slope of New Zealand and investigate phylogenetic relationships of these species and that of the rare desmodorid genera Onepunema and Pseudonchus, using SSU phylogenetic analyses for the first time. Whilst our analyses provided support for the current classification of Aponema within the family Microlaimidae and of Pseudonchus within the Desmodorida, we could not confirm relationships of Onepunema. We found no support for the placement of Molgolaimus with either the Desmodorida or Microlaimidae/ Microlaimida as in the current and previous classifications. Instead, Molgolaimus was classified with the Chromadorida with moderate and strong support in maximum likelihood and Bayesian analyses, respectively. Congruence analysis suggests that in some cases at least, the structure of the female reproductive system is a more taxonomically informative trait for marine nematode classification than the male reproductive system or cuticle. -
47Th Annual Meeting of the Organization of Nematologists of Tropical America / 47 Reunión Anula De La Organización De Nematólogos De Los Trópicos Americanos
47TH ANNUAL MEETING OF THE ORGANIZATION OF NEMATOLOGISTS OF TROPICAL AMERICA / 47 REUNIÓN ANULA DE LA ORGANIZACIÓN DE NEMATÓLOGOS DE LOS TRÓPICOS AMERICANOS “Plaza América” Conventions Center / Centro de Convenciones “Plaza América” Varadero, Cuba 17-22 May, 2015 / 17 al 22 de mayo del 2015 Members of the International Scientific Committee ONTA/ Miembros del Comité Científico Internacional ONTA/\ Dr. Larry Wayne Duncan, USA (President) Prof. Alejandro Esquivel MSc., Costa Rica (Vice-president) Dr. C. Overstreet, USA Dr. Danny Coyne, Kenia Dr. Deborah A. Neher, USA Prof. Edward McGawley PhD., USA Dr. Ernesto San Blas, Venezuela Dr. Juan C. Magunacelaya, Chile Dr. Luis V. López-Llorca, España Prof. Nahum Marbán-Mendoza PhD., México Dr. Nicole Viaene, Bélgica Dr. Patricia Stock, USA Dr. Paula Agudelo, USA Dr. Pierre Abad, Francia Dr. Raquel Campos-Herrera, Suiza Dr. Renato Inserra, USA Dr. Ricardo Holgado, Noruega Dr. Rosa Manzanilla-López, Reino Unido Dr. Soledad Verdejo-Lucas, España Prof. Wilfrida Decraemer PhD., Bélgica Members of the National Scientific Committee/ Miembros del Comité Científico Nacional Dr. Mayra G. Rodríguez Hernández (Presidenta) Dr. Emilio Fernández Gonzálvez Dr. Hortensia Gandarilla Basterrechea Dr. Iván Castro Lizazo Dr. Cs. Leopoldo J. Hidalgo Díaz Dr. Ricardo Cuadra Molina ABST 1 ABST 2 NEMATROPICA Vol. 45, No. 2, 2015 ORAL PRESENTATIONS / PRESENTACIONES ORALES PERSPECTIVES IN NEMATOLOGY NEMATODE COMMUNITIES AS RESEARCH, CROP PROTECTION AND ECOLOGICAL INDICATORS OF ECOSYSTEM FOOD SECURITY [PERSPECTIVAS EN HEALTH -
A Focus on the Enoplida and Early-Branching Clades
University of New Hampshire University of New Hampshire Scholars' Repository Hubbard Center for Genome Studies (HCGS) Research Institutes, Centers and Programs 11-12-2010 Moving towards a complete molecular framework of the Nematoda: a focus on the Enoplida and early-branching clades Holly M. Bik Natural History Museum, London P. John D. Lambshead National Oceanography Centre W. Kelley Thomas University of New Hampshire, [email protected] David H. Lunt University of Hull Follow this and additional works at: https://scholars.unh.edu/hubbard Part of the Ecology and Evolutionary Biology Commons Recommended Citation Bik et al.: Moving towards a complete molecular framework of the Nematoda: a focus on the Enoplida and early-branching clades. BMC Evolutionary Biology 2010 10:353. This Article is brought to you for free and open access by the Research Institutes, Centers and Programs at University of New Hampshire Scholars' Repository. It has been accepted for inclusion in Hubbard Center for Genome Studies (HCGS) by an authorized administrator of University of New Hampshire Scholars' Repository. For more information, please contact [email protected]. Bik et al. BMC Evolutionary Biology 2010, 10:353 http://www.biomedcentral.com/1471-2148/10/353 RESEARCH ARTICLE Open Access Moving towards a complete molecular framework of the Nematoda: a focus on the Enoplida and early-branching clades Holly M Bik1,2,3*, P John D Lambshead2, W Kelley Thomas3, David H Lunt4 Abstract Background: The subclass Enoplia (Phylum Nematoda) is purported to be the earliest branching clade amongst all nematode taxa, yet the deep phylogeny of this important lineage remains elusive. -
Improved Phylogenomic Sampling of Free-Living Nematodes Enhances
Smythe et al. BMC Evolutionary Biology (2019) 19:121 https://doi.org/10.1186/s12862-019-1444-x RESEARCHARTICLE Open Access Improved phylogenomic sampling of free- living nematodes enhances resolution of higher-level nematode phylogeny Ashleigh B. Smythe1, Oleksandr Holovachov2 and Kevin M. Kocot3* Abstract Background: Nematodes are among the most diverse and abundant metazoans on Earth, but research on them has been biased toward parasitic taxa and model organisms. Free-living nematodes, particularly from the clades Enoplia and Dorylaimia, have been underrepresented in genome-scale phylogenetic analyses to date, leading to poor resolution of deep relationships within the phylum. Results: We supplemented publicly available data by sequencing transcriptomes of nine free-living nematodes and two important outgroups and conducted a phylum-wide phylogenomic analysis including a total of 108 nematodes. Analysis of a dataset generated using a conservative orthology inference strategy resulted in a matrix with a high proportion of missing data and moderate to weak support for branching within and placement of Enoplia. A less conservative orthology inference approach recovered more genes and resulted in higher support for the deepest splits within Nematoda, recovering Enoplia as the sister taxon to the rest of Nematoda. Relationships within major clades were similar to those found in previously published studies based on 18S rDNA. Conclusions: Expanded transcriptome sequencing of free-living nematodes has contributed to better resolution among deep nematode lineages, though the dataset is still strongly biased toward parasites. Inclusion of more free- living nematodes in future phylogenomic analyses will allow a clearer understanding of many interesting aspects of nematode evolution, such as morphological and molecular adaptations to parasitism and whether nematodes originated in a marine or terrestrial environment.