The Expression of Foreign Gene Under the Control of Cauliflower Mosaic Virus 35S RNA Promoter
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TESTS of the Associanon of HEAT SHOCK PROTEIN 90 with A
TESTS OF THE ASSOCIAnON OF HEAT SHOCK PROTEIN 90 WITH A CAULIFLOWER MOSAIC VIRUS REVERSE TRANSCRIPTASE By BRESHANA QUIENE JOHNSON Bachelor of Science Xavier University of Louisiana New Orleans, Louisiana May 1997 Submitted to the Faculty of the Graduate College of the Oklahoma State University in partial fulfillment of the requirements for the Degree of MASTER OF SCIENCE July, 2000 Ok/ahoma State University Library TESTS OF THE ASSOCIAnON OF HEAT SHOCK PROTEIN 90 WITH A CAULIFLOWER MOSAIC VIRUS REVERSE TRANSCRIPTASE Thesis Approved: ~~-- Thesis Advisor ~~-~---- 11 ACKNOWLEDGEMENTS I sincerely thank my thesis advisor, Dr. Ulrich K. Melcher, for his guidance, supervision, expertise, and friendship. It was a pleasure to be a part of his Jab and I will always appreciate his dedication to his students and encouragement. I thank my committee members Dr. Richard C. Essenberg and Dr. Robelt L. Matts for their support and expertise. I also thank Dr. James B. Blair and the Department of Biochemistry and Molecular Biology for providing me with the opportunity to participate in the NIH Biomedical Graduate Students program and their financial support. I express my sincere gratitude to Dr. Steven D. Hartson for his guidance, suggestions, and inspiration throughout this project. I would like to thank staff and students of the Department of Biochemistry and Molecular Biology, who provided me with assistance: Ann Williams, Dr. Ba am Fraij, Dr. Jerry Merz, Wenhao Wang, Qi Jiang, Kenji Onodera, Wenjun Huang, Jieya Shao, Abdel Bior, and Thomas Prince I truly thank my parents for encouraging and supporting me throughout my academic pursuits. I am very grateful to them and blessed to have their love and concern. -
CRISPR/Cas9-Mediated Resistance to Cauliflower Mosaic Virus Haijie Liu1
bioRxiv preprint doi: https://doi.org/10.1101/191809; this version posted September 23, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. CRISPR/Cas9-mediated resistance to cauliflower mosaic virus Haijie Liu1,*, Cara L. Soyars2,7, *, Jianhui Li1, *, Qili Fei4,5, Guijuan He1, Brenda A. Peterson2,7, Blake C. Meyers4,5,6, Zachary L. Nimchuk2,3,7,8, and Xiaofeng Wang1,#. 1Department of Plant Pathology, Physiology and Weed Science; 2Department of Biological Sciences; 3Faculty of Health Sciences; Virginia Tech, Blacksburg, VA, USA; 4Department of Plant & Soil Sciences and Delaware Biotechnology Institute, University of Delaware, Newark, Delaware, USA; 5Donald Danforth Plant Science Center, St. Louis, Missouri, USA; 6University of Missouri – Columbia, Division of Plant Sciences, Columbia, MO; 7Department of Biology, University of North Carolina at Chapel Hill, and 8Curriculum in Genetics and Molecular Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA; *These authors contributed equally to this project. # Author for correspondence: Xiaofeng Wang, 549 Latham Hall, 220 Ag Quad Lane, Blacksburg, VA 24061. Telephone: 1-540-231-1868, Fax: 1-540-231-7477, Email: [email protected]. H. Liu: [email protected]; C.L. Soyars: [email protected]; J. Li: [email protected]; Q. Fei: [email protected]; G. He: [email protected]; B.A. Peterson: [email protected]; B.C. Meyers: [email protected]; Z.L. Nimchuk: [email protected] Running title: CRISPR-Cas9-conferred resistance to CaMV Key words: CRISPR-Cas9, cauliflower mosaic virus, virus resistance, virus escape, small RNA Word count: Summary, 216 and text, 4201 1 bioRxiv preprint doi: https://doi.org/10.1101/191809; this version posted September 23, 2017. -
Cauliflower Mosaic Virus (Camv)
Cauliflower Mosaic Virus (CaMV) Dr.Ramesh C.K Cauliflower Mosaic Virus (CaMV) • Cauliflower mosaic virus (CaMV) is a member of the genus Caulimovirus, one of the six genera in the family Caulimoviridae which are pararetroviruses that infect plants. • Pararetroviruses group due to its mode of replication via reverse transcription of a pre- genomic RNA intermediate. just like retroviruses but the viral particles contain DNA instead of RNA. • True retroviruses are not known in plants; however, plant pararetroviruses (caulimoviridae) share many retroviral properties, replicating by transcription in the nucleus followed by reverse transcription in the cytoplasm. • Pararetroviruses have circular DNA genomes that do not integrate into the host genome, and display several unique expression strategies. • CaMV infects mostly plants of the family Brassicaceae (such as cauliflower and turnip) but some CaMV strains are also able to infect Solanaceae species of the genera Datura and Nicotiana. • CaMV induces a variety of systemic symptoms such as mosaic, necrotic lesions on leaf surfaces, stunted growth, and deformation of the overall plant structure. • CaMV is transmitted by aphid species such as Myzus persicae. Once introduced within a plant host cell, virions migrate to the nuclear envelope of the plant cell. Structure • The CaMV particle is an icosahedron with a diameter of 52 nm built from 420 capsid protein (CP), which surrounds a solvent-filled central cavity. • In addition to capsid proteins, caulimoviruses are also surrounded by virus associated proteins. These proteins are responsible for assisting in the binding of the virus to DNA • CaMV contains a circular double-stranded DNA molecule of about 8.0 kilobases, interrupted by nicks that result from the actions of RNAse H during reverse transcription. -
Ribosome Shunting, Polycistronic Translation, and Evasion of Antiviral Defenses in Plant Pararetroviruses and Beyond Mikhail M
Ribosome Shunting, Polycistronic Translation, and Evasion of Antiviral Defenses in Plant Pararetroviruses and Beyond Mikhail M. Pooggin, Lyuba Ryabova To cite this version: Mikhail M. Pooggin, Lyuba Ryabova. Ribosome Shunting, Polycistronic Translation, and Evasion of Antiviral Defenses in Plant Pararetroviruses and Beyond. Frontiers in Microbiology, Frontiers Media, 2018, 9, pp.644. 10.3389/fmicb.2018.00644. hal-02289592 HAL Id: hal-02289592 https://hal.archives-ouvertes.fr/hal-02289592 Submitted on 16 Sep 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution - ShareAlike| 4.0 International License fmicb-09-00644 April 9, 2018 Time: 16:25 # 1 REVIEW published: 10 April 2018 doi: 10.3389/fmicb.2018.00644 Ribosome Shunting, Polycistronic Translation, and Evasion of Antiviral Defenses in Plant Pararetroviruses and Beyond Mikhail M. Pooggin1* and Lyubov A. Ryabova2* 1 INRA, UMR Biologie et Génétique des Interactions Plante-Parasite, Montpellier, France, 2 Institut de Biologie Moléculaire des Plantes, Centre National de la Recherche Scientifique, UPR 2357, Université de Strasbourg, Strasbourg, France Viruses have compact genomes and usually translate more than one protein from polycistronic RNAs using leaky scanning, frameshifting, stop codon suppression or reinitiation mechanisms. -
Co-Integrated Vectors
Co-integrated Vectors • This vectors were among the first types of modified and engineered Ti plasmids devised for Agrobacterium - mediated transformation, but are not widely used today. • These vectors are constructed by homologous recombination of a bacterial plasmid with the T-DNA region of an endogenous Ti plasmid in Agrobacterium. Integration of the two plasmids requires a region of homology present in both. • Three vectors are necessary in this system: • Disarmed Agrobacterium Ti plasmids In these Ti plasmids, the oncogenes located in the T-DNA region have been replaced by exogenous DNA. Examples of these vectors include: – pGV series: the phytohormone genes are excised and substituted by part of pBR322 vector sequence. The left and right border sequences as well as the nopaline synthase gene of the Ti plasmid are conserved. • Intermediate vectors These are small pBR322-based plasmids (E. coli vectors) containing a T-DNA region. They are used to overcome the problems derived from the large size of disarmed Ti plasmids and their lack of unique restriction sites. Intermediate vectors are replicated in E.coli and are transferred into Agrobacterium by conjugation. They cannot replicate in A. tumefaciens and therefore, carry DNA segments homologous to the disarmed T-DNA to permit recombination to form a co-integrated T-DNA structure. • Helper vectors These are small plasmids maintained in E. coli that contain transfer (tra) and mobilization (mob) genes, which allow the transfer of the conjugation-deficient intermediate vectors into Agrobacterium. A resulting co-integrated plasmid assembled by in vitro manipulation normally contains: the vir genes, the left and right T-DNA borders, an exogenous DNA sequence between the two T-DNA borders, and plant and bacterial selectable markers. -
An Abstract of the Dissertation Of
AN ABSTRACT OF THE DISSERTATION OF Alfredo Diaz Lara for the degree of Doctor of Philosophy in Botany and Plant Pathology presented on December 16, 2016. Title: Identification of Endogenous and Exogenous Pararetroviruses in Red Raspberry (Rubus idaeus L.) and Blueberry (Vaccinium corymbosum L.). Abstract approved: ______________________________________________________ Robert R. Martin The Pacific Northwest (Oregon and Washington in the United States and British Columbia in Canada) is one of the major producers of red raspberry (Rubus idaeus L.) and blueberry (Vaccinium corymbosum L.) in the world. The expansion of growing area with these crops has resulted in the emergence of new virus diseases that cause serious economic losses. The majority of viruses affecting plants (including blueberry and red raspberry) contain RNA genomes. In contrast, plant viruses with DNA genomes are relatively rare and most of the time ignored in virus surveys. The family Caulimoviridae is a group of plant pararetroviruses (reverse-transcribing viruses) with the ability to integrate their DNA into the host genome, resulting in complex molecular interactions that lead to inconsistencies in terms of detection and disease symptoms. Albeit, few studies have been conducted to determine the nature of plant pararetroviruses and their relationships with the associated host. To investigate the presence of pararetroviruses in blueberry and red raspberry, and their possible integration events, different plant material suspected to be infected with viruses was collected in nurseries, commercial fields and clonal germplasm repositories for a period of four years. For blueberry, using rolling circle amplification (RCA) a new virus was identified and named Blueberry fruit drop-associated virus (BFDaV) because of its association with fruit-drop disorder. -
Genetic Transformation of Hela Cells by Agrobacterium
Genetic transformation of HeLa cells by Agrobacterium Talya Kunik*†‡, Tzvi Tzfira*, Yoram Kapulnik†, Yedidya Gafni†, Colin Dingwall‡§, and Vitaly Citovsky*¶ *Department of Biochemistry and Cell Biology, State University of New York, Stony Brook, NY 11794-5215; †Institute of Field and Garden Crops, Agricultural Research Organization, P.O. Box 6, Bet-Dagan 50250, Israel; and ‡Department of Pharmacology, State University of New York, Stony Brook, NY 11794-8651 Edited by Eugene W. Nester, University of Washington, Seattle, WA, and approved December 8, 2000 (received for review July 13, 2000) Agrobacterium tumefaciens is a soil phytopathogen that elicits the control of the simian-virus-40 early promoter and Herpes- neoplastic growths on the host plant species. In nature, however, simplex virus thymidine kinase polyadenylation signal (derived Agrobacterium also may encounter organisms belonging to other from pEGFP-C1, CLONTECH) subcloned into the Klenow- kingdoms such as insects and animals that feed on the infected blunted EcoRI and HindIII sites of the pPZP221-based binary plants. Can Agrobacterium, then, also infect animal cells? Here, we vector (15), between its right and left nopaline-type T-DNA report that Agrobacterium attaches to and genetically transforms borders. several types of human cells. In stably transformed HeLa cells, the integration event occurred at the right border of the tumor- Bacterial Strains and Host Cell Lines. A. tumefaciens-strain C58C1, inducing plasmid’s transferred-DNA (T-DNA), suggesting bona fide harboring Ti-plasmid pGV3850 (16), was used as host for the T-DNA transfer and lending support to the notion that Agrobac- pNeo binary vector. Strain C58NT1, which does not contain a Ti terium transforms human cells by a mechanism similar to that plasmid (17), was used as control. -
A New and Distinct Species in the Genus Caulimovirus Exists As an Endogenous Plant Pararetroviral Sequence in Its Host, Dahlia Variabilis
Virology 376 (2008) 253–257 Contents lists available at ScienceDirect Virology journal homepage: www.elsevier.com/locate/yviro Rapid Communication A new and distinct species in the genus Caulimovirus exists as an endogenous plant pararetroviral sequence in its host, Dahlia variabilis Vihanga Pahalawatta, Keri Druffel, Hanu Pappu ⁎ Department of Plant Pathology, Washington State University, Pullman, WA, USA article info abstract Article history: Viruses in certain genera in family Caulimoviridae were shown to integrate their genomic sequences into their Received 6 August 2007 host genomes and exist as endogenous pararetroviral sequences (EPRV). However, members of the genus Returned to author for revision Caulimovirus remained to be the exception and are known to exist only as episomal elements in the 13 September 2007 infected cell. We present evidence that the DNA genome of a new and distinct Caulimovirus species, associated Accepted 4 March 2008 with dahlia mosaic, is integrated into its host genome, dahlia (Dahlia variabilis). Using cloned viral genes as Available online 7 May 2008 probes, Southern blot hybridization of total plant DNA from dahlia seedlings showed the presence of viral DNA in the host DNA. Fluorescent in situ hybridization using labeled DNA probes from the D10 genome localized Keywords: the viral sequences in dahlia chromosomes. The natural integration of a Caulimovirus genome into its host and Pararetrovirus – Dahlia mosaic virus its existence as an EPRV suggests the co-evolution of this plant virus pathosystem. Caulimovirus © 2008 Elsevier Inc. All rights reserved. Introduction genome, dahlia (Dahlia variabilis) and thus exists as an endogenous plant pararetrovirus (EPRV). Dahlia mosaic caulimovirus (DMV) is an important viral pathogen of dahlia in the US and several parts of the world. -
Cauliflower Mosaic Virus P6 Dysfunctions Histone Deacetylase
cells Article Cauliflower mosaic virus P6 Dysfunctions Histone Deacetylase HD2C to Promote Virus Infection Shun Li 1,2, Shanwu Lyu 1, Yujuan Liu 2, Ming Luo 1,3, Suhua Shi 4 and Shulin Deng 1,3,5,* 1 Guangdong Provincial Key Laboratory of Applied Botany & CAS Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China; [email protected] (S.L.); [email protected] (S.L.); [email protected] (M.L.) 2 School of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China; [email protected] 3 Center of Economic Botany, Core Botanical Gardens, Chinese Academy of Sciences, Guangzhou 510650, China 4 State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, Guangzhou 510275, China; [email protected] 5 National Engineering Research Center of Navel Orange, School of Life Sciences, Gannan Normal University, Ganzhou 341000, China * Correspondence: [email protected] Abstract: Histone deacetylases (HDACs) are vital epigenetic modifiers not only in regulating plant development but also in abiotic- and biotic-stress responses. Though to date, the functions of HD2C— an HD2-type HDAC—In plant development and abiotic stress have been intensively explored, its function in biotic stress remains unknown. In this study, we have identified HD2C as an interaction partner of the Cauliflower mosaic virus (CaMV) P6 protein. It functions as a positive regulator in defending against CaMV infection. The hd2c mutants show enhanced susceptibility to CaMV infection. -
Plant Virus DNA Replication Processes in Agrobacterium
Proc. Natl. Acad. Sci. USA Vol. 93, pp. 10280-10284, September 1996 Evolution Plant virus DNA replication processes in Agrobacterium: Insight into the origins of geminiviruses? (tomato leaf curl virus/rolling-circle replication/molecular evolution) J. E. RIGDEN*, I. B. DRY, L. R. KRAKE, AND M. A. REZAIANt Division of Horticulture, Commonwealth Scientific and Industrial Research Organization, GPO Box 350, Adelaide 5001, Australia Communicated by Allen Kerr, Adelaide, Australia, July 1, 1996 (received for review May 29, 1996) ABSTRACT Agrobacterium tumefaciens, a bacterial plant the accumulation of these infectious, monomeric viral DNA pathogen, when transformed with plasmid constructs con- species within the bacterial cell. taining greater than unit length DNA of tomato leaf curl geminivirus accumulates viral replicative form DNAs indis- tinguishable from those produced in infected plants. The MATERIALS AND METHODS accumulation of the viral DNA species depends on the pres- Construction of Clones. TLCV ORFs are present on both ence of two origins of replication in the DNA constructs and the virion-sense (encapsidated strand) and the complementary is drastically reduced by introducing mutations into the viral strand of the viral ds replicative form (RF) as shown in Fig. 1. replication-associated protein (Rep or Cl) ORF, indicating Construction of virion-sense ORF mutants is described in that an active viral replication process is occurring in the detail in Rigden et al. (8). These include frame-shift mutations bacterial cell. The accumulation of these viral DNA species is in the Vl ORF at nucleotide position 153 (Vi mutant), in the not affected by mutations or deletions in the other viral open V2 ORF at position 663 (V2 mutant) or in both (V1/V2 reading frames. -
TRANSGENIC PLANTS: Creation
TRANSGENIC PLANTS: Creation Transgenic plants can be produced by Microprojectile bombardment: shooting DNA-coated tungsten or gold particles into plant cells. Electroporation: use of a short burst of electricity to get the DNA into cells. Agrobacterium tumefaciens-mediated transformation: The plant cells are totipotent, therefore a genetically modified single cell can regenerate into a new plant. A. tumefaciens is a soil bacterium responsible for crown gall disease of dicotyledonous plants. The galls or tumors are formed at the junction between the root and the stem of infected plants. After the infection by A. tumefaciens, the plant cells begin to proliferate and form tumors, and they begin to synthesize an arginine derivative called opine. The opines synthesized are usually either nopaline or octopine depending on the strain of A. tumefaciens. These opines are used as energy sources by the infecting bacteria. The ability of A. tumefaciens to induce crown galls in plants is controlled by genetic information carried on Ti plasmid (tumor-inducing plasmid). Ti plasmid has two components the T-DNA (Transferred DNA) and the vir region, which are essential for the transformation of plant cells. During the transformation process, the T-DNA is excised from the Ti plasmid, transferred to a plant cell, and integrated into the DNA of the plant cell. The integration of the T-DNA occurs at random chromosomal sites. In some cases, multiple T-DNA integration events occur in the same cell. Structure of Ti plasmid Structure of the nopaline Ti plasmid pTi C58: ori, origin of replication; Tum, genes responsible for tumor formation;Nos, genes involved in nopaline biosynthesis; Noc, genes involved in the catabolism of nopaline; vir, virulence genes. -
Role of T-DNA Borders in the Transfer Process (Nopaline/Plants/Gene Transfer)
Proc. Natl. Acad. Sci. USA Vol. 83, pp. 4428-4432, June 1986 Genetics Rapid assay of foreign gene expression in leaf discs transformed by Agrobacterium tumefaciens: Role of T-DNA borders in the transfer process (nopaline/plants/gene transfer) R. B. HORSCH AND H. J. KLEE Monsanto Company, 700 Chesterfield Village Parkway, St. Louis, MO 63198 Communicated by Howard A. Schneiderman, February 24, 1986 ABSTRACT We have developed a sensitive leaf disc trans- These data suggest that either transfer or integration is being formation procedure for studying early and/or transient T- directed in a polar fashion from the right border sequence. It DNA expression during Agrobacterium tumefaciens-mediated should be noted that none of these experiments can distin- transformation of plant cells. Using this system, we have guish between transfer and integration, since formation of a examined the function of T-DNA border sequences on the early tumor requires both processes to occur. expression of T-DNA genes and on the stable integration of We have developed a system to measure early expression those genes in infected cells. Deletion of the right border from of T-DNA genes in a plant cell and subsequent stable the T-DNA appears to permit transfer ofT-DNA genes from the integration of those genes. Plant cells are cocultured with A. tumor-inducing (Ti) plasmid but greatly reduces the frequency tumefaciens carrying a T-DNA with the genes for nopaline of their stable integration. A binary vector has been construct- synthase (NOS) and a selectable marker encoding kanamycin ed to permit examination of T-DNA border function in trans to resistance (NOS-NPTII-NOS) (24).