Natural Source for Antiviral Compounds to Combat COVID-19
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I UNIVERSITY of CALIFORNIA, SAN DIEGO Insights Into Mechanisms Of
UNIVERSITY OF CALIFORNIA, SAN DIEGO Insights into mechanisms of high productivity and cultivation flexibility resulting from physiological and omic analyses of the microalga Marinichlorella kaistiae KAS603 A dissertation submitted in partial satisfaction of the requirements for the degree Doctor of Philosophy in Marine Biology by Eva Luz Sánchez Alvarez Committee in charge: Mark Hildebrand, Chair William Gerwick Brian Palenik Julian Schroeder José Luis Stephano Hornedo Victor Vacquier 2017 i Copyright Eva Luz Sánchez Alvarez, 2017 All rights reserved ii The Dissertation of Eva Luz Sánchez Alvarez is approved, and it is acceptable in quality and form for publication on microfilm and electronically: __________________________________________________________________ __________________________________________________________________ __________________________________________________________________ __________________________________________________________________ __________________________________________________________________ __________________________________________________________________ Chair University of California, San Diego 2017 DEDICATION This dissertation is dedicated to my son, Guillermo Salomón Sánchez Alvarez, for your love, for being you, and for putting up with my crazy ideas and mood swings. I truly admire the wonderful person you have become and I am sure that only great things await you. With love and admiration from your mom. iv EPIGRAPH “Sometimes the questions are complicated and the answers are simple.” Dr. Seuss -
Occurrence of Nitrogen-Fixing Cyanobacteria During Different Stages of Paddy Cultivation
Bangladesh J. Plant Taxon. 18(1): 73-76, 2011 (June) ` - Short communication © 2011 Bangladesh Association of Plant Taxonomists OCCURRENCE OF NITROGEN-FIXING CYANOBACTERIA DURING DIFFERENT STAGES OF PADDY CULTIVATION * KAUSHAL KISHORE CHOUDHARY Department of Botany, B.R.A. Bihar University, Muzaffarpur-842001, Bihar, India Keywords: Cyanobacteria; Diversity; Nitrogen-fixing; Rice fields; North Bihar. Rapid decline in soil fertility and productivity due to excessive application of chemical fertilizer particularly nitrogen and its increasing cost has induced to develop alternate biological sources of nitrogenous fertilizers (Boussiba, 1991). Biological fertilizers maintain the nitrogen status of the soils and helps in optimum crop production to meet the demand of increasing human populations while maintaining the agricultural practices sustainable. With establishment of agronomic potential of cyanobacteria (Singh, 1950), these photosynthetic prokaryotes were applied and studied for enrichment of different living ecosystems with nitrogenous compounds. Cyanobacteria are endowed with a specialized structure ‘heterocyst’ with ‘nitrogenase complex’ capable of converting unavailable sources of molecular nitrogen into nitrogenous compounds (Ernst et al., 1992). The ability of cyanobacteria to fix atmospheric nitrogen is increasing concern worldwide to exploit this tiny living system for nitrogenous fertilizers for sustainable agriculture practices. Advances in cyanobacteria have revealed their significant contribution in promoting the fertility of the soil and water including marine by adding nitrogen and phosphorus. Cyanobacteria contribute phosphorus to the soil by mobilizing the insoluble organic phosphates present in the soil with enzyme ‘phosphatses’ (Whitton et al., 1991). Moreover, cyanobacteria enhance the water holding capacity by adding polysaccharidic material to the soil (Richert et al., 2005) that increases the soil aggregation property. -
Antiviral Cyanometabolites—A Review
biomolecules Review Antiviral Cyanometabolites—A Review Hanna Mazur-Marzec 1,*, Marta Cegłowska 2 , Robert Konkel 1 and Krzysztof Pyr´c 3 1 Division of Marine Biotechnology, University of Gda´nsk,Marszałka J. Piłsudskiego 46, PL-81-378 Gdynia, Poland; [email protected] 2 Institute of Oceanology, Polish Academy of Science, Powsta´nców Warszawy 55, PL-81-712 Sopot, Poland; [email protected] 3 Virogenetics Laboratory of Virology, Malopolska Centre of Biotechnology, Jagiellonian University, Gronostajowa 7A, PL-30-387 Krakow, Poland; [email protected] * Correspondence: [email protected] Abstract: Global processes, such as climate change, frequent and distant travelling and population growth, increase the risk of viral infection spread. Unfortunately, the number of effective and accessible medicines for the prevention and treatment of these infections is limited. Therefore, in recent years, efforts have been intensified to develop new antiviral medicines or vaccines. In this review article, the structure and activity of the most promising antiviral cyanobacterial products are presented. The antiviral cyanometabolites are mainly active against the human immunodeficiency virus (HIV) and other enveloped viruses such as herpes simplex virus (HSV), Ebola or the influenza viruses. The majority of the metabolites are classified as lectins, monomeric or dimeric proteins with unique amino acid sequences. They all show activity at the nanomolar range but differ in carbohydrate specificity and recognize a different epitope on high mannose oligosaccharides. The cyanobacterial lectins include cyanovirin-N (CV-N), scytovirin (SVN), microvirin (MVN), Microcystis viridis lectin (MVL), and Oscillatoria agardhii agglutinin (OAA). Cyanobacterial polysaccharides, peptides, and other metabolites also have potential to be used as antiviral drugs. -
Transcriptional Landscapes of Lipid Producing Microalgae Benoît M
Transcriptional landscapes of lipid producing microalgae Benoît M. Carrères 2019 Transcriptional landscapes of lipid producing microalgae Benoî[email protected]:~$ ▮ Transcriptional landscapes of lipid producing microalgae Benoît Manuel Carrères Thesis committee Promotors Prof. Dr Vitor A. P. Martins dos Santos Professor of Systems and Synthetic Biology Wageningen University & Research Prof. Dr René H. Wij$els Professor of Bioprocess Engineering Wageningen University & Research Co-promotors Dr Peter J. Schaa% Associate professor* Systems and Synthetic Biology Wageningen University & Research Dr Dirk E. Martens Associate professor* Bioprocess Engineering Wageningen University & Research ,ther mem-ers Prof. Dr Alison Smith* University of Cam-ridge Prof. Dr. Dic+ de Ridder* Wageningen University & Research Dr Aalt D.). van Di#+* Wageningen University & Research Dr Ga-ino Sanche/(Pere/* Genetwister* Wageningen This research 0as cond1cted under the auspices of the .rad1ate School V2A. 3Advanced studies in Food Technology* Agro-iotechnology* Nutrition and Health Sciences). Transcriptional landscapes of lipid producing microalgae Benoît Manuel Carrères Thesis su-mitted in ful8lment of the re9uirements for the degree of doctor at Wageningen University -y the authority of the Rector Magnificus, Prof. Dr A.P.). Mol* in the presence of the Thesis' ommittee a%%ointed by the Academic Board to be defended in pu-lic on Wednesday 2; Novem-er 2;<= at 1.>; p.m in the Aula. Benoît Manuel Carrères 5ranscriptional landsca%es of lipid producing -
EMA Strain Catalogue 3Rd Edition
Microalgae strain catalogue A strain selection guide for microalgae users: cultivation and chemical characteristics for high added-value products Gonzalo M. Figueroa-Torres a, Elisabeth Bermejo-Padilla a. Jon K. Pittman b, Constantinos Theodoropoulos a a Department of Chemical Engineering and Analytical Science, Biochemical and Bioprocess Engineering Group b Department of Earth and Environmental Sciences The University of Manchester, Manchester, UK, M13 9PL 3rd Edition Page | 1 Microalgae strain catalogue - A strain selection guide for microalgae users 3rd edition, University of Manchester, Manchester,UK EnhanceMicroAlgae 2021 The 3rd edition of this catalogue contains information on the cultivation and composition characteristics of 37 microalgae. Each entry includes relevant links to Atlantic Area stakeholders known to have a relevant connection with each of the species listed, be it in the form of culture collections, research expertise, technology developers, or biomass producers. We invite the readers to visit and/or join the EnhanceMicroAlgae Stakeholder database: an easily accessible, visual and open access database that brings together all the European Atlantic Area players working in the microalgae sector. Contributing authors: Dr. Gonzalo M. Figueroa-Torres a, Dr. Elisabeth Bermejo-Padilla a. Dr. Jon K. Pittman b, Prof. Constantinos Theodoropoulos a a Department of Chemical Engineering and Analytical Science, Biochemical and Bioprocess Engineering Group b Department of Earth and Environmental Sciences The University of Manchester, Manchester, UK, M13 9PL This publication is part of the deliverables of the Interreg-funded international project EnhanceMicroAlgae. The authors gratefully acknowledge the European Regional Development Fund (ERDF) Interreg Atlantic Area programme which funded the EnhanceMicroAlgae project: EAPA_338/2016, “High added-value industrial opportunities for microalgae in the Atlantic Area”. -
DEVELOPMENT and EVALUATION of HIV Gp120 RESPONSIVE MICROBICIDE
DEVELOPMENT AND EVALUATION OF HIV gp120 RESPONSIVE MICROBICIDE FORMULATION FOR THE PREVENTION OF HIV SEXUAL TRANSMISSION A DISSERTATION IN Pharmaceutical Sciences and Chemistry Presented to the Faculty of the University Of Missouri-Kansas City in partial fulfillment of The requirements for the degree of DOCTOR OF PHILOSOPHY By Fohona S. Coulibaly B.S Chemical Engineering, INP-HB, Yamoussoukro, Ivory Coast, 2011 Kansas City, Missouri 2018 © 2018 FOHONA S. COULIBALY ALL RIGHTS RESERVED DEVELOPMENT AND EVALUATION OF HIV gp120 RESPONSIVE MICROBICIDE FORMULATION FOR THE PREVENTION OF HIV SEXUAL TRANSMISSION Fohona S. Coulibaly, Candidate for the Doctor of Philosophy Degree University of Missouri-Kansas City, 2018 ABSTRACT Sexual transmission of HIV remains the primary route (75 to 85%) of HIV infection among all new infection cases. Furthermore, women represent the most vulnerable population and are more susceptible to HIV infections than their male counterpart. Thus, there is an urgent need to develop topical (vaginal/rectal) microbicide formulations capable of preventing HIV sexual transmission. The objective of this dissertation is to develop a mannose specific, lectin-based topical microbicide formulation capable of targeting HIV gp120 for the prevention of HIV sexual transmission. In Chapters 1 and 2, the general hypothesis, aims and scope of this work are introduced. Chapter 3 covers the literature review of anti-HIV lectins and current delivery approaches. In Chapter 4, the binding interactions between the mannose specific lectin Concanavalin A (ConA) and glycogen from Oster, as well as mannan from Saccharomyces cerevisiae, were studied using a quartz crystal microbalance (QCM). The equilibrium dissociation constant describing the interaction between Con A and glycogen (KD = 0.25 μM) was 12 fold lower than the equilibrium dissociation constant describing the binding between Con A and mannan (KD = iii 2.89 μM). -
Antiviral Activity of Freshwater Algae Received On: 03-01-2012 Revised On: 09-01-2012 Accepted On: 13-01-2012
Journal of Applied Pharmaceutical Science 02 (02); 2012: 21-25 ISSN: 2231-3354 Antiviral Activity of Freshwater Algae Received on: 03-01-2012 Revised on: 09-01-2012 Accepted on: 13-01-2012 Sayda M. Abdo, Mona H. Hetta, Waleed M. El-Senousy, Rawheya A. Salah El Din and Gamila H. Ali ABSTRACT Sayda M. Abdo, Waleed M. El-Senousy, Five freshwater algal species were isolated from Nile River and studied for their Gamila H. Ali biological (cytotoxic and antiviral activity) in order to test their benefit in the Egyptian drinking Water pollution Research Department, water source. The algal species were isolated and identified as: Anabaena sphaerica, National Research Centre, Cairo. Chroococcus turgidus, Oscillatoria limnetica, and Spirulina platensis (blue – green algae, Cyanobacteria) and Cosmarium leave (green algae). They were cultivated using a Photobioreactor and purified using BG11 media. Twenty five grams of each of the five powdered algal species were extracted with MeOH till exhaustion to give five methanolic Mona H. Hetta extracts for Anabaena sphaerica, Chroococcus turgidus, Oscillatoria limnetica, Spirulina Pharmacognosy Department, Faculty platensis and Cosmarium leave respectively. The residues left were extracted with distilled H2O of Pharmacy, Beni-Suef University, at 50oC to give five aqueous extracts respectively. The cytotoxicity of all the extracts was tested Beni-Suef; on Hep-2 cell line and their antiviral assays were tested on Adenovirus Type 40 as a preliminary testing. Nested PCR was carried out for confirmation of Adenovirus. Antialgal inhibitory effect on algal community was carried out. Results revealed that the non toxic concentrations for all the extracts were 2mg/ml and Spirulina platensis methanol and water extracts were active alga as antiviral (50% and 23.3% of reduction respectively). -
Cyanobacteria Scytonema Javanicum and Scytonema Ocellatum Lipopolysaccharides Elicit Release of Superoxide Anion, Matrix-Metalloproteinase-9, Cytokines and Chemokines by Rat
toxins Article Cyanobacteria Scytonema javanicum and Scytonema ocellatum Lipopolysaccharides Elicit Release of Superoxide Anion, Matrix-Metalloproteinase-9, Cytokines and Chemokines by Rat Microglia In Vitro Lucas C. Klemm 1, Evan Czerwonka 2, Mary L. Hall 2, Philip G. Williams 3 and Alejandro M. S. Mayer 2,* 1 Biomedical Sciences Program, College of Health Sciences, Midwestern University, Downers Grove, IL 60515, USA; [email protected] 2 Department of Pharmacology, Chicago College of Osteopathic Medicine, Midwestern University, Downers Grove, IL 60515, USA; [email protected] (E.C.); [email protected] (M.L.H.) 3 Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96882, USA; [email protected] * Correspondence: [email protected]; Tel.: +1-630-515-6951 Received: 9 January 2018; Accepted: 14 March 2018; Published: 21 March 2018 Abstract: Cosmopolitan Gram-negative cyanobacteria may affect human and animal health by contaminating terrestrial, marine and freshwater environments with toxins, such as lipopolysaccharide (LPS). The cyanobacterial genus Scytonema (S) produces several toxins, but to our knowledge the bioactivity of genus Scytonema LPS has not been investigated. We recently reported that cyanobacterium Oscillatoria sp. LPS elicited classical and alternative activation of rat microglia in vitro. Thus, we hypothesized that treatment of brain microglia in vitro with either cyanobacteria S. javanicum or S. ocellatum LPS might stimulate classical and alternative activation with concomitant release of − superoxide anion (O2 ), matrix metalloproteinase-9 (MMP-9), cytokines and chemokines. Microglia were isolated from neonatal rats and treated in vitro with either S. javanicum LPS, S. ocellatum LPS, or E. coli LPS (positive control), in a concentration-dependent manner, for 18 h at 35.9 ◦C. -
Cyanobacteria Scytonema Javanicum and Scytonema Ocellatum
toxins Article Cyanobacteria Scytonema javanicum and Scytonema ocellatum Lipopolysaccharides Elicit Release of Superoxide Anion, Matrix-Metalloproteinase-9, Cytokines and Chemokines by Rat Microglia In Vitro Lucas C. Klemm 1, Evan Czerwonka 2, Mary L. Hall 2, Philip G. Williams 3 and Alejandro M. S. Mayer 2,* 1 Biomedical Sciences Program, College of Health Sciences, Midwestern University, Downers Grove, IL 60515, USA; [email protected] 2 Department of Pharmacology, Chicago College of Osteopathic Medicine, Midwestern University, Downers Grove, IL 60515, USA; [email protected] (E.C.); [email protected] (M.L.H.) 3 Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96882, USA; [email protected] * Correspondence: [email protected]; Tel.: +1-630-515-6951 Received: 9 January 2018; Accepted: 14 March 2018; Published: 21 March 2018 Abstract: Cosmopolitan Gram-negative cyanobacteria may affect human and animal health by contaminating terrestrial, marine and freshwater environments with toxins, such as lipopolysaccharide (LPS). The cyanobacterial genus Scytonema (S) produces several toxins, but to our knowledge the bioactivity of genus Scytonema LPS has not been investigated. We recently reported that cyanobacterium Oscillatoria sp. LPS elicited classical and alternative activation of rat microglia in vitro. Thus, we hypothesized that treatment of brain microglia in vitro with either cyanobacteria S. javanicum or S. ocellatum LPS might stimulate classical and alternative activation with concomitant release of − superoxide anion (O2 ), matrix metalloproteinase-9 (MMP-9), cytokines and chemokines. Microglia were isolated from neonatal rats and treated in vitro with either S. javanicum LPS, S. ocellatum LPS, or E. coli LPS (positive control), in a concentration-dependent manner, for 18 h at 35.9 ◦C. -
A Preliminary Study on Biodiversity of Cyanobacteria of Agniar Estuary, Pudukkottai
International Journal of Pharmacy and Biological Sciences-IJPBSTM (2019) 9 (1): 139-145 Online ISSN: 2230-7605, Print ISSN: 2321-3272 Research Article | Biological Sciences | Open Access | MCI Approved UGC Approved Journal A Preliminary Study on Biodiversity of Cyanobacteria of Agniar Estuary, Pudukkottai R. Anbalagan and R. Sivakami* PG & Research Department of Zoology, Arignar Anna Govt. Arts College, Musiri -621211, Tamil Nadu, India. Received: 4 Oct 2018 / Accepted: 8 Nov 2018 / Published online: 1 Jan 2019 Corresponding Author Email: [email protected] Abstract In the present study, a total of 38 species belonging to 12 classes were recorded. Among the various classes, Oscillatoriaceae recorded maximum diversity by recording 10 species followed by Phormidiaceae recording five species and Nostocaceae by four species; while Chrococeaceae, Merispropediaceae and Microcystaceae recorded three species each, Scytonemataceae and Pseudoanabaenaceae were represented by two species and classes Dermocarpaceae, Synechoccaceae and Xenococcaceae were represented only by one species each. A familywise comparison reveals that Phormidiaceae and Sycotomateaceae preferred February to record their highest counts, while Dermococcaceae preferred May and Merispopediaceae recorded the maximal counts in June. However, Synechoccaceae registered their maxima in July while Nostococcaeceae preferred July and August and Chrococcaceae recorded their maxima in October. Keywords Agniar estuary, Cyanobacteria, biodiversity, Tamil Nadu ***** INTRODUCTION Due to the unique feature of salinity in the estuaries, Estuaries are unstable ecosystems generally having a both freshwater and marine ecosystems can be limited number of organisms (Selvam et al., 2013). encountered here. However, the different conditions However, they support a high abundance of present in these systems also result in high mortality organisms due to their high productivity. -
View of Investigations…………………………………………………...26
UNRAVELING GENETICALLY ENCODED PATHWAYS LEADING TO BIOACTIVE METABOLITES IN GROUP V CYANOBACTERIA by BRITTNEY MICHALLE BUNN Submitted in partial fulfillment of the requirements For the degree of Doctor of Philosophy Dissertation Advisor: Dr. Rajesh Viswanathan Department of Chemistry CASE WESTERN RESERVE UNIVERSITY January, 2016 I CASE WESTERN RESERVE UNIVERSITY SCHOOL OF GRADUATE STUDIES We hereby approve the dissertation of BRITTNEY MICHALLE BUNN candidate for the degree of Doctor of Philosophy*. Committee Chair Robert Salomon, PhD Committee Member Anthony Pearson, PhD Committee Member Michael Zagorski, PhD Committee Member John Mieyal, PhD Date of Defense August 31, 2015 *We also certify that written approval has been obtained for any proprietary material contained therein. II This thesis is dedicated to my parents, Glenn and Michalle Bunn. I am forever grateful for your boundless love and unwavering support and encouragement. III Table of contents Chapter 1: General Introduction…………………………………………………………..1 1.1 Introduction to Cyanobacteria…………………………………………………2 1.2 Cyanobacteria as a Source of Bioactive Natural Products……………………...3 1.3 Cyanobacterial Natural Product Biosyntheses…………………………….…...6 1.4 Group V Cyanobacteria’s Hapalindole-type Alkaloid Family of Natural Products…………………………………………………………………..10 1.5 Hapalindole-type Alkaloid Biosynthesis……………………………….…….19 1.6 Synthetic Biology Approach to Bioactive Natural Products……………….…23 1.6.1 Introduction to Synthetic Biology as a Tool for Biosynthetic Investigations…………………………………………………….23 -
Overview of the Structure–Function Relationships of Mannose-Specific Lectins from Plants, Algae and Fungi Annick Barre, Yves Bourne, Els Van Damme, Pierre Rougé
Overview of the Structure–Function Relationships of Mannose-Specific Lectins from Plants, Algae and Fungi Annick Barre, Yves Bourne, Els van Damme, Pierre Rougé To cite this version: Annick Barre, Yves Bourne, Els van Damme, Pierre Rougé. Overview of the Structure–Function Relationships of Mannose-Specific Lectins from Plants, Algae and Fungi. International Journal of Molecular Sciences, MDPI, 2019, 20 (2), pp.254. 10.3390/ijms20020254. hal-02388775 HAL Id: hal-02388775 https://hal-amu.archives-ouvertes.fr/hal-02388775 Submitted on 21 Jan 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License Review Overview of the Structure–Function Relationships of Mannose-Specific Lectins from Plants, Algae and Fungi Annick Barre 1, Yves Bourne 2, Els J. M. Van Damme 3 and Pierre Rougé 1,* 1 UMR 152 PharmaDev, Institut de Recherche et Développement, Faculté de Pharmacie, Université Paul Sabatier, 35 Chemin des Maraîchers, 31062 Toulouse, France; [email protected] 2 Centre National