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Ten Years of Heteroptera Barcoding at CBGP: Outputs and Prospects

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Ten years of Heteroptera barcoding at CBGP: outputs and prospects. Jean-Claude Streito, Guénaëlle Genson, Eric Pierre, Astrid Cruaud, Jean Yves Rasplus To cite this version: Jean-Claude Streito, Guénaëlle Genson, Eric Pierre, Astrid Cruaud, Jean Yves Rasplus. Ten years of Heteroptera barcoding at CBGP: outputs and prospects.. 6. Quadrennial IHS Meeting, Dec 2018, La Plata, Argentina. hal-02788356 HAL Id: hal-02788356 https://hal.inrae.fr/hal-02788356 Submitted on 5 Jun 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Ten years of Heteroptera barcoding at CBGP : outputs and prospects Streito Jean-Claude; Genson Guénaëlle; Pierre Éric; Cruaud Astrid & Rasplus Jean-Yves [email protected] : INRA-CBGP Montpellier IHS VI meeting La Plata 3-7 dec 2018 Barcoding at CBGP : 10 years My lab : INRA-CBGP (Centre for Biology and Management of Populations) Where : Montpellier, France My job : Produce tools for identification of Arthropods Morphology and molecular (barcoding) .02 [email protected] : INRA-CBGP Montpellier IHS VI meeting La Plata 3-7 dec 2018 Barcoding at CBGP : 10 years We are interested in Arthropods of agronomic interest Pests: Beneficial : Invasive : .03 [email protected] : INRA-CBGP Montpellier IHS VI meeting La Plata 3-7 dec 2018 Barcoding at CBGP : 10 years We have increased true bugs barcoding in recent years Many true bug species have become major pests in Europe in recent years, Pests: especially on fruit and vegetable crops Lygus spp., Nezara viridula, Gonocerus acuteangulatus ... Several predatory true bugs are used as biocontrol agents, especially Mirid and Beneficial: Anthocorid species Invasive : Several alien species have become invasive, including Halyomorpha halys, Corythucha arcuata… .04 [email protected] : INRA-CBGP Montpellier IHS VI meeting La Plata 3-7 dec 2018 _01 Material and Methods .05 [email protected] : INRA-CBGP Montpellier IHS VI meeting La Plata 3-7 dec 2018 Barcoding at CBGP : methods Standard Barcode: COI 656 pb (Herbert et al., 2003) First: Classical PCR and Sanger sequencing For 3 years: two-step PCR and Miseq sequencing .06 IHS VI meeting La Plata 3-7 dec 2018 Barcoding at CBGP : methods We switched to the production of barcodes by NGS for many reasons: - lower cost for massive sample runs - a better understanding of artifacts (pseudogenes, heteroplasmy...) - the ability to detect parasitism Sanger: only one sequence obtained for each bug (the barcode of the bug or that of its potential parasitoid). NGS: several thousand sequences produced for each bug (the barcode of the bug but also that of its potential parasitoids, its endosymbionts etc.) .07 [email protected] : INRA-CBGP Montpellier IHS VI meeting La Plata 3-7 dec 2018 Barcoding at CBGP : methods International databases provide barcodes: BOLD Systems. Editor BOLD Canada. DDBJ - DNA Data Bank of Japan. Editor : DDBJ Center. GenBank - NCBI. Editor : NCBI, National Center for Biotechnology Information. But none of them fully meet our needs: - many of the insects we are interested in have not yet been sequenced - international DB (especially GenBank) contain too many misidentifications to allow reliable assignation To design our identification tools: - we fill the gaps and contribute to barcoding of life - our constant concern is to avoid sequences incorrectly identified (contaminations, misidentifications, pseudogenes…) .08 [email protected] : INRA-CBGP Montpellier IHS VI meeting La Plata 3-7 dec 2018 Species to be Sampling Identification Databases included conditioning Web portal Orius albidipennis storage Orius horwathi Orius laevigatus Orius laticollis Orius lindbergi Orius majusculus Orius minutus Orius niger Orius pallidicornis Orius vicinus Orius insidiosus Orius navaishae Orius tantillus DNA extraction and Collections storage ADN PCR amplification COI + nuDNA Sequencing 2nd quality control Phylogenetic Sequence correction analysis 1st quality control Protocol used at CBGP for the production and validation of sequences .09 Barcoding at CBGP : methods One important step: a non-destructive DNA extraction that allows vouchering and morphological re-examination by a taxonomist Extraction Dissection Vouchers Observation .010 Barcoding at CBGP : methods Last quality control : validation of sequences by phylogenetic inference .011 [email protected] : INRA-CBGP Montpellier _02 Results .012 [email protected] : INRA-CBGP Montpellier IHS VI meeting La Plata 3-7 dec 2018 10 years Barcoding CBGP : Results Number of sequences produced : All database: 21 169 COI sequences Heteroptera: 2 123 COI sequences http://arthemisdb.supagro.inra.fr/DefaultInfo.aspx?Page=Home Famillies: 35 Genus: 202 Species: 363 A database (Arthemis DB@se) focusing on pests and their natural enemies is continually implemented. .013 [email protected] : INRA-CBGP Montpellier IHS VI meeting La Plata 3-7 dec 2018 10 years Barcoding CBGP : Results Representation of biogeographical regions: 5% 75% 5% 11% 3% 1% .014 [email protected] : INRA-CBGP Montpellier IHS VI meeting La Plata 3-7 dec 2018 10 years Barcoding CBGP : Results % Number of sequences produced: sequences Heteroptera: 2 123 COI sequences Pests 38% Beneficials 28% Invasive 12% Other bugs 22% .015 [email protected] : INRA-CBGP Montpellier IHS VI meeting La Plata 3-7 dec 2018 10 years Barcoding CBGP : Results Number of sequences by families Species COI COI Sub-order Infra-orders Super-famillies Famillies world Bold CBGP ENICOCEPHALOMORPHA AENICTOPECHEIDAE 20 1 0 (425 espèces) ENICOCEPHALIDAE 405 2 0 CERATOCOMBIDAE 52 2 2 DIPSOCORIDAE 51 2 2 DIPSOCOROMORPHA HYPSIPTERYGIDAE 4 - 0 (395 espèces) SCHIZOPTERIDAE 287 2 0 STEMMOCRYPTIDAE 1 - 0 GERRIDAE 751 65 3 GERROIDEA HERMATOBATIDAE 9 - 0 VELIIDAE 962 29 1 GERROMORPHA HEBRIDAE 221 5 0 (2 120 espèces) HEBROIDEA MACROVELIIDAE 3 0 0 PARAPHRYNOVELIIDAE 2 1 0 MESOVELIOIDEA MESOVELIIDAE 46 14 0 HETEROPTERA HYDROMETROIDEA HYDROMETRIDAE 126 6 1 (45 318 espèces) AEPOPHILIDAE 1 - 0 SALDOIDEA LEPTOPODOMORPHA SALDIDAE 335 42 3 (381 espèces) LEPTOPODIDAE 39 1 0 LEPTOPOIDEA OMANIIDAE 6 - 0 APHELOCHEIRIDAE 78 2 0 NAUCOROIDEA NAUCORIDAE 391 7 1 POTAMOCORIDAE 8 4 0 BELOSTOMATIDAE 160 28 0 NEPOIDEA NEPIDAE 268 19 0 NEPOMORPHA CORIXOIDEA CORIXIDAE 607 89 1 (2 309 espèces) HELOTREPHIDAE 180 2 0 NOTONECTOIDEA NOTONECTIDAE 400 30 2 PLEIDAE 38 5 0 GELASTOCORIDAE 111 5 0 OCHTEROIDEA OCHTERIDAE 68 2 0 .016 [email protected] : INRA-CBGP Montpellier IHS VI meeting La Plata 3-7 dec 2018 10 years Barcoding CBGP : Results Number of sequences by families: Species COI COI Sous-ordres Infra-ordres Superfamilles Familles World Bold CBGP ANTHOCORIDAE 507 93 41 CIMICIDAE 110 18 1 CIMICOIDEA LYCTOCORIDAE 27 6 0 PLOKIOPHILIDAE 13 0 0 POLYCTENIDAE 32 1 0 CURALIIDAE 1 0 0 VELOCIPEDOIDEA VELOCIPEDIDAE 31 1 0 HETEROPTERA CIMICOMORPHA JOPPEICOIDEA JOPPEICIDAE 1 1 0 (45 318 espèces) (21 277 espèces) MEDOCOSTIDAE 1 - 0 NABOIDEA NABIDAE 386 42 12 MICROPHYSOIDEA MICROPHYSIDAE 25 8 0 MIRIDAE 11 101 879 107 MIROIDEA THAUMASTOCORIDAE 19 1 1 TINGIDAE 2 124 89 33 PACHYNOMIDAE 21 0 0 REDUVIOIDEA REDUVIIDAE 6 878 236 2 .017 [email protected] : INRA-CBGP Montpellier IHS VI meeting La Plata 3-7 dec 2018 10 years Barcoding CBGP : Results Number of validated sequences by families: Species COI COI Sous-ordres Infra-ordres Superfamilles Familles World Bold CBGP ARADIDAE 1 931 87 0 ARADOIDEA TERMITAPHIDIDAE 9 1 0 ALYDIDAE 359 26 0 COREIDAE 3 178 125 9 COREOIDEA HYOCEPHALIDAE 3 1 0 RHOPALIDAE 295 46 12 STENOCEPHALIDAE 16 9 1 IDIOSTOLOIDEA IDIOSTOLIDAE 4 0 0 ARTHENEIDAE 20 2 0 BERYTIDAE 174 20 2 BLISSIDAE 436 10 3 COLOBATHRISTIDAE 84 1 0 HETEROPTERA PENTATOMOMORPHA CRYPTORHAMPHIDAE 4 - 0 (45 318 espèces) (18 411 espèces) CYMIDAE 54 9 1 GEOCORIDAE 280 16 5 HENICOCORIDAE 1 - 0 LYGAEOIDEA HETEROGASTRIDAE 100 3 0 LYGAEIDAE 968 90 26 MALCIDAE 29 - 0 MESCHIIDAE 5 - 0 NINIDAE 13 1 0 OXYCARENIDAE 150 17 4 PACHYGRONTHIDAE 78 5 0 PIESMATIDAE 44 5 2 RHYPAROCHROMIDAE 1 850 127 15 .018 [email protected] : INRA-CBGP Montpellier IHS VI meeting La Plata 3-7 dec 2018 10 years Barcoding CBGP : Results Number of validated sequences by families: Nombre COI COI Sous-ordres Infra-ordres Superfamilles Familles d’espèces Bold CBGP ACANTHOSOMATIDAE 317 47 1 APHYLIDAE 3 - 0 CANOPIDAE 16 1 0 CYDNIDAE 765 25 2 CYRTOCORIDAE 11 1 0 DINIDORIDAE 110 9 0 LESTONIIDAE 2 1 0 MEGARIDIDAE 18 - 0 PENTATOMOIDEA PARASTRACHIIDAE 4 0 0 HETEROPTERA PENTATOMOMORPHA PENTATOMIDAE 4 841 438 56 (45 318 espèces) (18 411 espèces) PHLOEIDAE 4 1 0 PLATASPIDIDAE 604 8 1 SCUTELLERIDAE 531 34 5 TESSARATOMIDAE 250 6 1 THAUMASTELLIDAE 3 2 0 THYREOCORIDAE 220 9 0 UROSTYLIDAE 181 6 0 LARGIDAE 106 14 0 PYRRHOCOROIDEA PYRRHOCORIDAE 340 34 2 Total 45 318 2977 363 .019 [email protected] : INRA-CBGP Montpellier IHS VI meeting La Plata 3-7 dec 2018 10 years Barcoding CBGP : Results Several similar studies has been conducted (Jung et al, 2011; Park et al., 2011; Raupach et al., 2014 etc.) we found quite similar results: - standard COI bacode is a
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    Cambridge University Press 0521632412 - Identifying British Insects and Arachnids: An Annotated Bibliography of Key Works Edited by Peter C. Barnard Index More information Index This index includes all the higher taxonomic categories mentioned in the book, from orders down to families, but page numbers are given only for the main occurrences of those names. It therefore also acts as a complete alphabetic list of the higher taxa of British insects and arachnids (except for the numerous families of mites). Acalyptratae 173, 188 Anyphaenidae 327 Acanthosomatidae 55 Aphelinidae 198, 293, 308 Acari 320, 330 Aphelocheiridae 55 Acartophthalmidae 173, 191 Aphididae 56, 62 Acerentomidae 23 Aphidoidea 56, 61 Acrididae 39 Aphrophoridae 56 Acroceridae 172, 180, 181 Apidae 198, 217 Aculeata 197, 206 Apioninae 83, 134 Adelgidae 56, 62, 64 Apocrita 197, 198, 206, 227 Adelidae 146 Apoidea 198, 214 Adephaga 82, 91 Arachnida 320 Aderidae 83, 126, 127 Aradidae 55 Aeolothripidae 52 Araneae 320, 326 Aepophilidae 55 Araneidae 327 Aeshnidae 31 Araneomorphae 327 Agelenidae 327 Archaeognatha 21, 25, 26 Agromyzidae 173, 188, 193 Arctiidae 146, 162 Alexiidae 83 Argidae 197, 201 Aleyrodidae 56, 67, 68 Argyronetidae 327 Aleyrodoidea 56, 66 Arthropleona 22 Alucitidae 146 Aschiza 173, 184 Alucitoidea 146 Asilidae 172, 180, 181, 182 Alydidae 55, 58 Asiloidea 172, 181 Amaurobiidae 327 Asilomorpha 172, 180, 182 Amblycera 48 Asteiidae 173, 189 Anisolabiidae 41 Asterolecaniidae 56, 70 Anisopodidae 172, 175, 177 Atelestidae 172, 183, 185 Anisopodoidea 172 Athericidae 172, 181 Anisoptera 31 Attelabidae 83, 134 Anobiidae 82, 119 Atypidae 327 Anoplura 48 Auchenorrhyncha 54, 55, 59 Anthicidae 83, 90, 126 Aulacidae 198, 228 Anthocoridae 55, 57, 58 Aulacigastridae 173, 192 Anthomyiidae 173, 174, 186, 187 Anthomyzidae 173, 188 Baetidae 28 Anthribidae 83, 88, 133, 134 Beraeidae 142 © Cambridge University Press www.cambridge.org Cambridge University Press 0521632412 - Identifying British Insects and Arachnids: An Annotated Bibliography of Key Works Edited by Peter C.
  • Hemiptera: Heteroptera: Helotrephidae) from Laos and Notes on Mixotrephes Punctatus

    Hemiptera: Heteroptera: Helotrephidae) from Laos and Notes on Mixotrephes Punctatus

    ACTA ENTOMOLOGICA MUSEI NATIONALIS PRAGAE Published 9.xii.2011 Volume 51(2), pp. 397–406 ISSN 0374-1036 A new subgenus and species of Mixotrephes (Hemiptera: Heteroptera: Helotrephidae) from Laos and notes on Mixotrephes punctatus Miroslav PAPÁČEK1) & Herbert ZETTEL2) 1) University of South Bohemia, Faculty of Education, Jeronýmova 10, CZ-371 15 České Budĕjovice, Czech Republic; e-mail: [email protected] 2) Natural History Museum Vienna, International Research Institute of Entomology, Burgring 7, 1010 Vienna, Austria; e-mail: [email protected] Abstract. Mixotrephes (Pictotrephes) pictus subgen. nov. & sp. nov. is described from the Bolaven Plateau in Laos. The new taxon of the tribe Limnotrephini is compared with other two subgenera, Mixotrephes s. str. Papáček, Štys & Tonner, 1989 and Thermotrephes Papáček & Zettel, 2006. Pictotrephes subgen. nov. differs from Mixotrephes s. str. and Thermotrephes by coarse sculpture of cephalonotum and mesoscutellum, wide mesoscutellum with convex sides, and relatively unmodi- fi ed terminalia of both male and female. In addition this study also reports on the unusually pale hindwing-micropterous morph of Mixotrephes (Thermotrephes) punctatus Papáček & Zettel, 2008 from Meghalaya, northwestern India. Key words. Helotrephidae, Limnotrephini, Mixotrephes, Pictotrephes, Thermo- trephes, new subgenus, new species, micropterous morph, India, Laos Introduction This paper reports on a new subgenus, a new species and on the up to the present unknown, unusually pale micropterous morph, based on material of Mixotrephes Papáček, Štys & Tonner, 1989 deposited in the collection of the Department of Entomology at the National Museum, Praha, Czech Republic. The water bug genus Mixotrephes has been originally described as M. hoberlandti Papá- ček, Štys & Tonner, 1989, a species from Afghanistan and Iran (PAPÁČEK et al.
  • Survey of Species of the Genus Orius in the Tunisian Sahel Region

    Survey of Species of the Genus Orius in the Tunisian Sahel Region

    Survey of Species of the Genus Orius in the Tunisian Sahel Region Mohamed Elimem, Ecole Supérieure d’Agriculture de Mograne, Université de Carthage, 1121, Mograne, Tunisia, Essia Limem-Sellemi, Soukaina Ben Othmen, Institut Supérieur Agronomique de Chott-Mariem, Université de Sousse, 4042, Chott-Mariem, Sousse, Tunisia, Abir Hafsi, Institut Supérieur Agronomique de Chott-Mariem, Université de Sousse, 4042, Chott-Mariem, Sousse, Tunisia ; UMR- PVBMT, CIRAD, Université de la Réunion, France, Ibtissem Ben Fekih, Institut National de Recherche Agronomique de Tunisie, Université de Carthage, 1004, Tunis-Menzah, Tunisia, Ahlem Harbi, Institut Supérieur Agronomique de Chott- Mariem, Université de Sousse, 4042, Chott-Mariem, Sousse, Tunisia ; Unidad Asociada de Entomología UJI/IVIA. Centro de Protección Vegetal y Biotecnología. Instituto Valenciano de Investigaciones Agrarias (IVIA). Apartado Oficial. 46113, Montcada, Valencia, Spain, and Brahim Chermiti, Institut Supérieur Agronomique de Chott-Mariem, Université de Sousse, 4042, Chott-Mariem, Sousse, Tunisia __________________________________________________________________________ ABSTRACT Elimem, M., Limem-Sellemi, E., Ben Othmen, S., Hafsi, A., Ben Fekih, I., Harbi, A., and Chermiti, B. 2017. Survey of the genus Orius species in the Tunisian Sahel region. Tunisian Journal of Plant Protection 12: 173-187. Species of the genus Orius belong to the Anthocoridae family. They are polyphagous predators of small sized insects and they are of great importance in biological control. During an inventory of Orius species on Chrysanthemum coronarium flowers undertaken in 2010 and 2011 in different locations in the Tunisian Sahel region, three species were encountered namely O. laevigatus, O. albidipennis and O. majusculus. These species are predators of mites and small insects such as thrips, aphids, and white.