The Effects of Decomposing Invasive Jellyfish on Biogeochemical Fluxes and Microbial Dynamics in an Ultraoligotrophic
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Cobia Database Articles Final Revision 2.0, 2-1-2017
Revision 2.0 (2/1/2017) University of Miami Article TITLE DESCRIPTION AUTHORS SOURCE YEAR TOPICS Number Habitat 1 Gasterosteus canadus Linné [Latin] [No Abstract Available - First known description of cobia morphology in Carolina habitat by D. Garden.] Linnaeus, C. Systema Naturæ, ed. 12, vol. 1, 491 1766 Wild (Atlantic/Pacific) Ichthyologie, vol. 10, Iconibus ex 2 Scomber niger Bloch [No Abstract Available - Description and alternative nomenclature of cobia.] Bloch, M. E. 1793 Wild (Atlantic/Pacific) illustratum. Berlin. p . 48 The Fisheries and Fishery Industries of the Under this head was to be carried on the study of the useful aquatic animals and plants of the country, as well as of seals, whales, tmtles, fishes, lobsters, crabs, oysters, clams, etc., sponges, and marine plants aml inorganic products of U.S. Commission on Fisheries, Washington, 3 United States. Section 1: Natural history of Goode, G.B. 1884 Wild (Atlantic/Pacific) the sea with reference to (A) geographical distribution, (B) size, (C) abundance, (D) migrations and movements, (E) food and rate of growth, (F) mode of reproduction, (G) economic value and uses. D.C., 895 p. useful aquatic animals Notes on the occurrence of a young crab- Proceedings of the U.S. National Museum 4 eater (Elecate canada), from the lower [No Abstract Available - A description of cobia in the lower Hudson Eiver.] Fisher, A.K. 1891 Wild (Atlantic/Pacific) 13, 195 Hudson Valley, New York The nomenclature of Rachicentron or Proceedings of the U.S. National Museum Habitat 5 Elacate, a genus of acanthopterygian The universally accepted name Elucate must unfortunately be supplanted by one entirely unknown to fame, overlooked by all naturalists, and found in no nomenclator. -
Proteomic Analysis of the Venom of Jellyfishes Rhopilema Esculentum and Sanderia Malayensis
marine drugs Article Proteomic Analysis of the Venom of Jellyfishes Rhopilema esculentum and Sanderia malayensis 1, 2, 2 2, Thomas C. N. Leung y , Zhe Qu y , Wenyan Nong , Jerome H. L. Hui * and Sai Ming Ngai 1,* 1 State Key Laboratory of Agrobiotechnology, School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, China; [email protected] 2 Simon F.S. Li Marine Science Laboratory, State Key Laboratory of Agrobiotechnology, School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, China; [email protected] (Z.Q.); [email protected] (W.N.) * Correspondence: [email protected] (J.H.L.H.); [email protected] (S.M.N.) Contributed equally. y Received: 27 November 2020; Accepted: 17 December 2020; Published: 18 December 2020 Abstract: Venomics, the study of biological venoms, could potentially provide a new source of therapeutic compounds, yet information on the venoms from marine organisms, including cnidarians (sea anemones, corals, and jellyfish), is limited. This study identified the putative toxins of two species of jellyfish—edible jellyfish Rhopilema esculentum Kishinouye, 1891, also known as flame jellyfish, and Amuska jellyfish Sanderia malayensis Goette, 1886. Utilizing nano-flow liquid chromatography tandem mass spectrometry (nLC–MS/MS), 3000 proteins were identified from the nematocysts in each of the above two jellyfish species. Forty and fifty-one putative toxins were identified in R. esculentum and S. malayensis, respectively, which were further classified into eight toxin families according to their predicted functions. Amongst the identified putative toxins, hemostasis-impairing toxins and proteases were found to be the most dominant members (>60%). -
7.014 Handout PRODUCTIVITY: the “METABOLISM” of ECOSYSTEMS
7.014 Handout PRODUCTIVITY: THE “METABOLISM” OF ECOSYSTEMS Ecologists use the term “productivity” to refer to the process through which an assemblage of organisms (e.g. a trophic level or ecosystem assimilates carbon. Primary producers (autotrophs) do this through photosynthesis; Secondary producers (heterotrophs) do it through the assimilation of the organic carbon in their food. Remember that all organic carbon in the food web is ultimately derived from primary production. DEFINITIONS Primary Productivity: Rate of conversion of CO2 to organic carbon (photosynthesis) per unit surface area of the earth, expressed either in terns of weight of carbon, or the equivalent calories e.g., g C m-2 year-1 Kcal m-2 year-1 Primary Production: Same as primary productivity, but usually expressed for a whole ecosystem e.g., tons year-1 for a lake, cornfield, forest, etc. NET vs. GROSS: For plants: Some of the organic carbon generated in plants through photosynthesis (using solar energy) is oxidized back to CO2 (releasing energy) through the respiration of the plants – RA. Gross Primary Production: (GPP) = Total amount of CO2 reduced to organic carbon by the plants per unit time Autotrophic Respiration: (RA) = Total amount of organic carbon that is respired (oxidized to CO2) by plants per unit time Net Primary Production (NPP) = GPP – RA The amount of organic carbon produced by plants that is not consumed by their own respiration. It is the increase in the plant biomass in the absence of herbivores. For an entire ecosystem: Some of the NPP of the plants is consumed (and respired) by herbivores and decomposers and oxidized back to CO2 (RH). -
Bacterial Production and Respiration
Organic matter production % 0 Dissolved Particulate 5 > Organic Organic Matter Matter Heterotrophic Bacterial Grazing Growth ~1-10% of net organic DOM does not matter What happens to the 90-99% of sink, but can be production is physically exported to organic matter production that does deep sea not get exported as particles? transported Export •Labile DOC turnover over time scales of hours to days. •Semi-labile DOC turnover on time scales of weeks to months. •Refractory DOC cycles over on time scales ranging from decadal to multi- decadal…perhaps longer •So what consumes labile and semi-labile DOC? How much carbon passes through the microbial loop? Phytoplankton Heterotrophic bacteria ?? Dissolved organic Herbivores ?? matter Higher trophic levels Protozoa (zooplankton, fish, etc.) ?? • Very difficult to directly measure the flux of carbon from primary producers into the microbial loop. – The microbial loop is mostly run on labile (recently produced organic matter) - - very low concentrations (nM) turning over rapidly against a high background pool (µM). – Unclear exactly which types of organic compounds support bacterial growth. Bacterial Production •Step 1: Determine how much carbon is consumed by bacteria for production of new biomass. •Bacterial production (BP) is the rate that bacterial biomass is created. It represents the amount of Heterotrophic material that is transformed from a nonliving pool bacteria (DOC) to a living pool (bacterial biomass). •Mathematically P = µB ?? µ = specific growth rate (time-1) B = bacterial biomass (mg C L-1) P= bacterial production (mg C L-1 d-1) Dissolved organic •Note that µ = P/B matter •Thus, P has units of mg C L-1 d-1 Bacterial production provides one measurement of carbon flow into the microbial loop How doe we measure bacterial production? Production (∆ biomass/time) (mg C L-1 d-1) • 3H-thymidine • 3H or 14C-leucine Note: these are NOT direct measures of biomass production (i.e. -
GLOBAL PRIMARY PRODUCTION and EVAPOTRANSPIRATION by Steven W
15 GLOBAL PRIMARY PRODUCTION AND EVAPOTRANSPIRATION by Steven W. Running and Maosheng Zhao DATA PRODUCTS Moderate Resolution Imaging Spectroradiometer Terrestrial primary production provides the energy to (MODIS) sensor, these variables are calculated maintain the structure and functions of ecosystems, every eight days in near real time at 1 km resolution. and supplies goods (e.g. food, fuel, wood and fi bre) MODIS GPP, NPP and ET data are available at the for human society. Gross primary production (GPP) EOS data gateway (see link below). is the amount of carbon fi xed by photosynthesis, To correct for contamination in the global and net primary production (NPP) is the amount of refl ectance data due to severe cloudiness or aerosols carbon converted into biomass after subtracting in the near real time products, these datasets are the cost of plant respiration. The water loss through reprocessed at the end of each year to build more exchange of trace gas CO2 by leaf stomata during stable, permanent datasets. These end-of-year photosynthesis plus evaporation from soil and versions of MODIS GPP, NPP and ET are available at plants is evapotranspiration (ET). ET computes the NTSG, University of Montana (see link below). water lost by a land surface, so it is consequently a component of the water balance in a region, and RESULTS FOR 2000–2006 is therefore relevant for drought monitoring and Figure 1 shows the seven-year average MODIS water management, providing an assessment of NPP for vegetated land on earth at 1 km spatial the water potentially available for human society. -
Phytoplankton As Key Mediators of the Biological Carbon Pump: Their Responses to a Changing Climate
sustainability Review Phytoplankton as Key Mediators of the Biological Carbon Pump: Their Responses to a Changing Climate Samarpita Basu * ID and Katherine R. M. Mackey Earth System Science, University of California Irvine, Irvine, CA 92697, USA; [email protected] * Correspondence: [email protected] Received: 7 January 2018; Accepted: 12 March 2018; Published: 19 March 2018 Abstract: The world’s oceans are a major sink for atmospheric carbon dioxide (CO2). The biological carbon pump plays a vital role in the net transfer of CO2 from the atmosphere to the oceans and then to the sediments, subsequently maintaining atmospheric CO2 at significantly lower levels than would be the case if it did not exist. The efficiency of the biological pump is a function of phytoplankton physiology and community structure, which are in turn governed by the physical and chemical conditions of the ocean. However, only a few studies have focused on the importance of phytoplankton community structure to the biological pump. Because global change is expected to influence carbon and nutrient availability, temperature and light (via stratification), an improved understanding of how phytoplankton community size structure will respond in the future is required to gain insight into the biological pump and the ability of the ocean to act as a long-term sink for atmospheric CO2. This review article aims to explore the potential impacts of predicted changes in global temperature and the carbonate system on phytoplankton cell size, species and elemental composition, so as to shed light on the ability of the biological pump to sequester carbon in the future ocean. -
Nomad Jellyfish Rhopilema Nomadica Venom Induces Apoptotic Cell
molecules Article Nomad Jellyfish Rhopilema nomadica Venom Induces Apoptotic Cell Death and Cell Cycle Arrest in Human Hepatocellular Carcinoma HepG2 Cells Mohamed M. Tawfik 1,* , Nourhan Eissa 1 , Fayez Althobaiti 2, Eman Fayad 2,* and Ali H. Abu Almaaty 1 1 Department of Zoology, Faculty of Science, Port Said University, Port Said 42526, Egypt; [email protected] (N.E.); [email protected] (A.H.A.A.) 2 Department of Biotechnology, Faculty of Sciences, Taif University, P.O. Box 11099, Taif 21944, Saudi Arabia; [email protected] * Correspondence: tawfi[email protected] (M.M.T.); [email protected] (E.F.) Abstract: Jellyfish venom is a rich source of bioactive proteins and peptides with various biological activities including antioxidant, antimicrobial and antitumor effects. However, the anti-proliferative activity of the crude extract of Rhopilema nomadica jellyfish venom has not been examined yet. The present study aimed at the investigation of the in vitro effect of R. nomadica venom on liver cancer cells (HepG2), breast cancer cells (MDA-MB231), human normal fibroblast (HFB4), and human normal lung cells (WI-38) proliferation by using MTT assay. The apoptotic cell death in HepG2 cells was investigated using Annexin V-FITC/PI double staining-based flow cytometry analysis, western blot analysis, and DNA fragmentation assays. R. nomadica venom displayed significant Citation: Tawfik, M.M.; Eissa, N.; dose-dependent cytotoxicity on HepG2 cells after 48 h of treatment with IC50 value of 50 µg/mL Althobaiti, F.; Fayad, E.; Abu Almaaty, and higher toxicity (3:5-fold change) against MDA-MB231, HFB4, and WI-38 cells. -
An Alien Jellyfish Rhopilema Nomadica and Its Impacts to the Eastern
J. Black Sea/Mediterranean Environment Vol. 16(2): 149- 156 (2010) An alien jellyfish Rhopilema nomadica and its impacts to the Eastern Mediterranean part of Turkey Yabancı denizanası Rhopilema nomadica ve Türkiye’nin doğu Akdeniz sahillerine etkileri Bayram Öztürk* and Melek İşinibilir *Department of Marine Biology, Faculty of Fisheries, Istanbul University, Istanbul, Turkey. Abstract An alien scyphomedusa Rhopilema nomadica human health, tourism and fisheries Mediterranean coast of Turkey. The painful stings of jellyfish may pose a danger to holiday makers. A monitoring programme is recommended for the impacts on tourism, human health and fisheries to mitigate of the effect of this jellyfish. Keywords: Rhopilema nomadica, Mediterranean coast of Turkey, invasive species. Introduction In recent years, more alien jellyfish species has been observed in several coasts of the Mediterranean Sea. The highly invasive species Mnemiopsis leidyi is probably the best known of the world. Following its accidental introduction to the Black Sea in the 1980’s, M.leidyi has spread to the Marmara Sea, Caspian, Aegean Sea, Mediterranean Sea, Baltic and North Seas (Shiganova et al. 2001, Isinibilir et al. 2002, Isinibilir et al. 2004, Faasse and Bayha 2006, Javidpour et al. 2006, Shiganova and Malej 2009). *Corresponding author: [email protected] 149 A large and stinging jellyfish species, Rhopilema nomadica, entered through the Suez Canal in the 1970s (Galil et al. 1990). Although it is assumed to have arrived via the Suez Canal, R.nomadica is rare in the red Sea and is not known from elsewhere (Mills 2001). Galil et al. (2009) also found the tropical scyphomedusan Phyllorhiza punctata, already recorded from the eastern Mediterranean in the past, but absent for many years. -
Biomineralization and Global Biogeochemical Cycles Philippe Van Cappellen Faculty of Geosciences, Utrecht University P.O
1122 Biomineralization and Global Biogeochemical Cycles Philippe Van Cappellen Faculty of Geosciences, Utrecht University P.O. Box 80021 3508 TA Utrecht, The Netherlands INTRODUCTION Biological activity is a dominant force shaping the chemical structure and evolution of the earth surface environment. The presence of an oxygenated atmosphere- hydrosphere surrounding an otherwise highly reducing solid earth is the most striking consequence of the rise of life on earth. Biological evolution and the functioning of ecosystems, in turn, are to a large degree conditioned by geophysical and geological processes. Understanding the interactions between organisms and their abiotic environment, and the resulting coupled evolution of the biosphere and geosphere is a central theme of research in biogeology. Biogeochemists contribute to this understanding by studying the transformations and transport of chemical substrates and products of biological activity in the environment. Biogeochemical cycles provide a general framework in which geochemists organize their knowledge and interpret their data. The cycle of a given element or substance maps out the rates of transformation in, and transport fluxes between, adjoining environmental reservoirs. The temporal and spatial scales of interest dictate the selection of reservoirs and processes included in the cycle. Typically, the need for a detailed representation of biological process rates and ecosystem structure decreases as the spatial and temporal time scales considered increase. Much progress has been made in the development of global-scale models of biogeochemical cycles. Although these models are based on fairly simple representations of the biosphere and hydrosphere, they account for the large-scale changes in the composition, redox state and biological productivity of the earth surface environment that have occurred over geological time. -
Improved Efficiency of the Biological Pump As a Trigger for the Late Ordovician Glaciation
ARTICLES https://doi.org/10.1038/s41561-018-0141-5 Improved efficiency of the biological pump as a trigger for the Late Ordovician glaciation Jiaheng Shen1,2*, Ann Pearson1*, Gregory A. Henkes1,3, Yi Ge Zhang1,4, Kefan Chen5, Dandan Li5, Scott D. Wankel 6, Stanley C. Finney7 and Yanan Shen 5 The first of the ‘Big Five’ Phanerozoic mass extinctions occurred in tandem with an episode of glaciation during the Hirnantian Age of the Late Ordovician. The mechanism or change in the carbon cycle that promoted this glaciation, thereby resulting in the extinction, is still debated. Here we report new, coupled nitrogen isotope analyses of bulk sediments and chlorophyll degrada- tion products (porphyrins) from the Vinini Creek section (Vinini Formation, Nevada, USA) to show that eukaryotes increas- ingly dominated marine export production in the lead-up to the Hirnantian extinction. We then use these findings to evaluate changes in the carbon cycle by incorporating them into a biogeochemical model in which production is increased in response to an elevated phosphorus inventory, potentially caused by enhanced continental weathering in response to the activity of land plants and/or an episode of volcanism. The results suggest that expanded eukaryotic algal production may have increased the community average cell size, leading to higher export efficiency during the Late Katian. The coincidence of this community shift with a large-scale marine transgression increased organic carbon burial, drawing down CO2 and triggering the Hirnantian glaciation. This episode may mark an early Palaeozoic strengthening of the biological pump, which, for a short while, may have made eukaryotic algae indirect killers. -
When the Air Turns the Oceans Sour
2200 pH value 8.3 8.2 8.1 8.0 7.9 7.8 7.7 7.6 7.5 7.4 7.3 7.2 7.1 Unfavorable prognosis: According to simulations of researchers at the Max Planck Institute in Hamburg, the pH value of the oceanic surface layer will be considerably lower in 2200 than in 1950, visible in the color shift within the area shown in red (left). The oceans are becoming more acidic. FOCUS_Geosciences When the Air Turns the Oceans Sour Human society has begun an ominous large-scale experiment, the full consequences of which will not be foreseeable for some time yet. Massive emissions of man-made carbon dioxide are heating up the Earth. But that’s not all: the increased concentration of this greenhouse gas in the atmosphere is also acidifying the oceans. Tatiana Ilyina and her staff at the Max Planck Institute for Meteorology in Hamburg are researching the consequences this could have. TEXT TIM SCHRÖDER hey’re called “sea butterflies” are warming the Earth like a green- because they float in the house. Less well known is the fact that ocean like a small winged the rising concentration of carbon diox- creature. However, pteropods ide in the atmosphere also leads to the belong to the gastropod class oceans slowly becoming more acidic. T of mollusks. They paddle through the This is because the oceans absorb a large water with shells as small as a baby’s portion of the carbon dioxide from the fingernail, and strangely transparent atmosphere. Put simply, the gas forms skin. -
Sinking Jelly-Carbon Unveils Potential Environmental Variability Along a Continental Margin
Sinking Jelly-Carbon Unveils Potential Environmental Variability along a Continental Margin Mario Lebrato1,2*, Juan-Carlos Molinero1, Joan E. Cartes3, Domingo Lloris3, Fre´de´ric Me´lin4, Laia Beni- Casadella3 1 Department of Biogeochemistry and Ecology, Helmholtz Centre for Ocean Research Kiel (GEOMAR), Kiel, Germany, 2 Department of Geosciences, Scripps Institution of Oceanography, San Diego, California, United States of America, 3 Institut de Cie`ncies del Mar de Barcelona (CSIC), Barcelona, Spain, 4 Joint Research Centre, Ispra, Italy Abstract Particulate matter export fuels benthic ecosystems in continental margins and the deep sea, removing carbon from the upper ocean. Gelatinous zooplankton biomass provides a fast carbon vector that has been poorly studied. Observational data of a large-scale benthic trawling survey from 1994 to 2005 provided a unique opportunity to quantify jelly-carbon along an entire continental margin in the Mediterranean Sea and to assess potential links with biological and physical variables. Biomass depositions were sampled in shelves, slopes and canyons with peaks above 1000 carcasses per trawl, translating to standing stock values between 0.3 and 1.4 mg C m2 after trawling and integrating between 30,000 and 175,000 m2 of seabed. The benthopelagic jelly-carbon spatial distribution from the shelf to the canyons may be explained by atmospheric forcing related with NAO events and dense shelf water cascading, which are both known from the open Mediterranean. Over the decadal scale, we show that the jelly-carbon depositions temporal variability paralleled hydroclimate modifications, and that the enhanced jelly-carbon deposits are connected to a temperature-driven system where chlorophyll plays a minor role.