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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
Causes and Possible Consequences of Hybridisation in Angelfishes at Christmas Island
Edith Cowan University Research Online Theses: Doctorates and Masters Theses 2019 Causes and possible consequences of hybridisation in angelfishes at Christmas Island Federico Vitelli Edith Cowan University Follow this and additional works at: https://ro.ecu.edu.au/theses Part of the Genetics and Genomics Commons, and the Terrestrial and Aquatic Ecology Commons Recommended Citation Vitelli, F. (2019). Causes and possible consequences of hybridisation in angelfishes at Christmas Island. https://ro.ecu.edu.au/theses/2197 This Thesis is posted at Research Online. https://ro.ecu.edu.au/theses/2197 Edith Cowan University Copyright Warning You may print or download ONE copy of this document for the purpose of your own research or study. The University does not authorize you to copy, communicate or otherwise make available electronically to any other person any copyright material contained on this site. You are reminded of the following: Copyright owners are entitled to take legal action against persons who infringe their copyright. A reproduction of material that is protected by copyright may be a copyright infringement. Where the reproduction of such material is done without attribution of authorship, with false attribution of authorship or the authorship is treated in a derogatory manner, this may be a breach of the author’s moral rights contained in Part IX of the Copyright Act 1968 (Cth). Courts have the power to impose a wide range of civil and criminal sanctions for infringement of copyright, infringement of moral rights and other offences under the Copyright Act 1968 (Cth). Higher penalties may apply, and higher damages may be awarded, for offences and infringements involving the conversion of material into digital or electronic form. -
Les Haplochromis Spp. (Teleoster, Cichlidae) Des Zones Rocheuses Du Mwanza Gulf, Lac Victoria, Tanzanie : Structure Des Communautés Et Écomorphologie
Thèses documen ts microfichés Les Haplochromis spp. (Teleoster, Cichlidae) des zones rocheuses du Mwanza Gulf, lac Victoria, Tanzanie : Structure des communautés et écomorphologie. llllnllllnlniinliiiiniiniiliniiniiniliiiliillilillilFonds Documentaire ORSTOM 010012512 no157 3 microfiches Thèses et documents microfichés Orstom, l’Institut français de recherche scientifique pour le développement en coopération La loi du ler juillet 1992 (code de la propriété intellectuelle, première partie) n’autorisant, aux termes des alinéas 2 et 3 de l’article L. 122-5, d’une part, que les « copies ou reproductions stricte- ment réservées à l’usage du copiste et non destinées à une utilisation collective » et, d’autre part, que les analyses et les courtes citations dans le but d’exemple et d’illustration, « toute représentation ou reproduction intégrale ou partielle faite sans le consentement de l’auteur ou de ses ayants droit ou ayants cause, est illicite » (alinéa ler de l’article L. 122-4). Cette représentation ou reproduction, par quelque procédé que ce soit, constituerait donc une contrefaçon passible des peines prévues au titre III de la loi précitée. 0 ORSTOM éditions 1996, Paris ISSN : 0767-922X ISBN : 2-7099-I 342-9 Les Haplochromis spp. (Teleostei, Cichlidae) des zones rocheuses du Mwanza Gulf, lac Victoria, Tanzanie : structure des communautés et écomorphologie Mots clé Haplochromis, Cichlidae, lac Victoria, Mwanza Gulf, zones rocheuses, structure des communaut&s, ècomorphologie, plasticit6 phbnotypique. spkiation. Résumé L’ichtyofaune du lac Victoria est principalement composee d’especes endemiques de Tel6osteer-u appartenant & la famille des Cichlides. La diversite des formes, Observ&e chez ces poissons, en fait ur des exemples les plus remarquables de radiation adaptative chez les vertebres. -
Accepted Version
This document is the accepted manuscript version of the following article: Selz, O. M., Thommen, R., Pierotti, M. E. R., Anaya Rojas, J. M., & Seehausen, O. (2016). Differences in male coloration are predicted by divergent sexual selection between populations of a cichlid fish. Proceedings of the Royal Society B: Biological Sciences, 283(1830), 20160172 (9 pp.). https://doi.org/10.1098/rspb.2016.0172 1 Differences in male coloration are predicted by divergent sexual 2 selection between populations of a cichlid fish. 3 4 Selz, O.M.1,2, Thommen, R.2, Pierotti, M.E.R.4, Anaya-Rojas, J. M.2,3 & Seehausen, 5 O1,2. 6 7 Key words: mate choice, assortative mating, sexual selection, reproductive isolation, 8 sensory drive, cichlid, 9 10 1Department of Fish Ecology and Evolution, EAWAG Swiss Federal Institute of 11 Aquatic Science and Technology, Center for Ecology, Evolution and Biogeochemistry, 12 Seestrasse 79, CH-6047 Kastanienbaum, Switzerland, 13 2Aquatic Ecology and Evolution, Institute of Ecology and Evolution, University of 14 Bern, Baltzerstrasse 6, CH-3012 Bern, Switzerland 15 3Department of Aquatic Ecology, EAWAG Swiss Federal Institute of Aquatic Science 16 and Technology, Center for Ecology, Evolution and Biogeochemistry, Seestrasse 79, 17 CH-6047 Kastanienbaum, Switzerland, 18 4 Naos Laboratories, Smithsonian Tropical Research Institute, Panama, Calzada de 19 Amador, Bd 356, 0843-03092 Panama 20 21 Abstract 22 Female mating preferences can influence both intraspecific sexual selection and 23 interspecific reproductive isolation and have therefore been proposed to play a central 24 role in speciation. Here, we investigate experimentally in the African cichlid fish 25 Pundamilia nyererei if differences in male coloration between three para-allopatric 26 populations (i.e. -
The Origin of Alternative Phenotypes in Fishes
View metadata, citation broughtandCORE similar to you papers by at core.ac.uk provided by OpenGrey Repository THE ORIGIN OF ALTERNATIVE PHENOTYPES IN FISHES BY MÓNICA VANESSA GARDUÑO PAZ THIS THESIS IS SUBMITTED IN FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY DEPARTMENT OF ECOLOGY AND EVOLUTIONARY BIOLOGY, FACULTY OF BIOMEDICAL & LIFE SCIENCES. JULY 2009 © MÓNICA VANESSA GARDUÑO PAZ 2009 i ABSTRACT A basic aim of evolutionary biology is to explain the enormous diversity among animal and plant species. But also within species there is often large genetic and phenotypic variation, and such variation is necessary for evolution to create new reproductively isolated species. The present thesis is directed to explain differentiation within populations highlighting and discussing the significance of phenotypic plasticity as an evolutionary process that leads to the expression of alternative phenotypes within a species. Such phenotypic expressions are particularly interesting, because the process by which new species are formed typically involves a temporary stage within the splitting species, that is, different heritable and distinct types that coexist within the same population. Such phenotypes may be raw material for full species formation, and the study of alternative-phenotype species should therefore be particularly worthwhile in speciation research. When alternative phenotypes are not entirely genetic they may arise as a result of developmental plasticity, when organisms develop in accordance with local abiotic -
A Microsatellite-Based Genetic Linkage Map of the Cichlid Fish, Astatotilapia Burtoni (Teleostei): a Comparison of Genomic Archi
Copyright Ó 2009 by the Genetics Society of America DOI: 10.1534/genetics.108.089367 A Microsatellite-Based Genetic Linkage Map of the Cichlid Fish, Astatotilapia burtoni (Teleostei): A Comparison of Genomic Architectures Among Rapidly Speciating Cichlids Matthias Sanetra,* Frederico Henning,* Shoji Fukamachi* and Axel Meyer*,†,1 *Department of Biology, Lehrstuhl fu¨r Zoologie und Evolutionsbiologie, University of Konstanz, 78457 Konstanz, Germany and †Institute for Advanced Study Berlin, 14193 Berlin, Germany Manuscript received March 18, 2008 Accepted for publication July 15, 2008 ABSTRACT Cichlid fishes compose an astonishingly large number of species and formed species flocks in record- breaking time. To facilitate efficient genome scans and comparisons of cichlid genomes, we constructed a medium-density genetic linkage map of microsatellite markers of Astatotilapia burtoni. The mapping cross was derived from two inbred laboratory lines to obtain F2 progeny by intercrossing. The map revealed 25 linkage groups spanning 1249.3 cM of the genome (size 950 Mb) with an average marker spacing of 6.12 cM. The seven Hox clusters, ParaHox C1, and two paralogs of Pdgfrb were mapped to different linkage groups, thus supporting the hypothesis of a teleost-specific genome duplication. The A. burtoni linkage map was compared to the other two available maps for cichlids using shared markers that showed conservation and synteny among East African cichlid genomes. Interesting candidate genes for cichlid speciation were mapped using SNP markers. HE adaptive radiations of cichlid fishes of East The observed redundant patterns in the evolutionary T Africa are well-known examples for rapid di- diversification of cichlid fishes support the view that the versification and explosive speciation. -
Divergent Hormonal Responses to Social Competition in Closely Related Species of Haplochromine Cichlid fish
Hormones and Behavior 61 (2012) 518–526 Contents lists available at SciVerse ScienceDirect Hormones and Behavior journal homepage: www.elsevier.com/locate/yhbeh Divergent hormonal responses to social competition in closely related species of haplochromine cichlid fish Peter D. Dijkstra a,b,c,⁎, Machteld N. Verzijden c,d, Ton G.G. Groothuis b, Hans A. Hofmann a,e a The University of Texas at Austin, Section of Integrative Biology, 1 University Station-C0930, Austin, TX 78712, USA b Behavioural Biology, Centre for Behaviour and Neurosciences, University of Groningen, Nijenborgh 7, 9747 AG Groningen, The Netherlands c Behavioral Biology, Institute of Biology Leiden (IBL), Leiden University, Sylvius Laboratory, PO Box 9505, 2300 RA Leiden, The Netherlands d Department of Biology, Lund University, Sölvegatan 37, SE-223 62 Lund, Sweden e The University of Texas at Austin, Institute for Cellular and Molecular Biology, Institute for Neuroscience, 1 University Station-C0930, Austin, TX 78712, USA article info abstract Article history: The diverse cichlid species flocks of the East African lakes provide a classical example of adaptive radiation. Received 13 September 2011 Territorial aggression is thought to influence the evolution of phenotypic diversity in this system. Most Revised 13 January 2012 vertebrates mount hormonal (androgen, glucocorticoid) responses to a territorial challenge. These hormones, Accepted 14 January 2012 in turn, influence behavior and multiple aspects of physiology and morphology. Examining variation in Available online 24 January 2012 competition-induced hormone secretion patterns is thus fundamental to an understanding of the mechanisms of phenotypic diversification. We test here the hypothesis that diversification in male aggression has been Keywords: Testosterone accompanied by differentiation in steroid hormone levels. -
Carotenoid-Based Coloration in Cichlid Fishes
Comparative Biochemistry and Physiology, Part A 173 (2014) 42–51 Contents lists available at ScienceDirect Comparative Biochemistry and Physiology, Part A journal homepage: www.elsevier.com/locate/cbpa Review Carotenoid-based coloration in cichlid fishes Kristina M. Sefc a, Alexandria C. Brown b,c,1, Ethan D. Clotfelter b,⁎ a Institute of Zoology, University of Graz, Universitätsplatz 2, 8010 Graz, Austria b Department of Biology, Amherst College, Amherst, MA 01002, USA c Graduate Program in Organismic and Evolutionary Biology, University of Massachusetts, Amherst, MA 01003 USA article info abstract Article history: Animal colors play important roles in communication, ecological interactions and speciation. Carotenoid Received 21 November 2013 pigments are responsible for many yellow, orange and red hues in animals. Whereas extensive knowledge on Received in revised form 3 March 2014 the proximate mechanisms underlying carotenoid coloration in birds has led to testable hypotheses on avian Accepted 14 March 2014 color evolution and signaling, much less is known about the expression of carotenoid coloration in fishes. Available online 22 March 2014 Here, we promote cichlid fishes (Perciformes: Cichlidae) as a system in which to study the physiological and evolutionary significance of carotenoids. Cichlids include some of the best examples of adaptive radiation and Keywords: fi fi Pigment color pattern diversi cation in vertebrates. In this paper, we examine tness correlates of carotenoid pigmentation Trade-off in cichlids and review hypotheses regarding the signal content of carotenoid-based ornaments. Carotenoid-based Antioxidant coloration is influenced by diet and body condition and is positively related to mating success and social domi- Signal nance. -
A Review on Fish Sensory Systems and Amazon Water Types with Implications to Biodiversity
fevo-08-589760 January 5, 2021 Time: 11:12 # 1 HYPOTHESIS AND THEORY published: 07 January 2021 doi: 10.3389/fevo.2020.589760 A Review on Fish Sensory Systems and Amazon Water Types With Implications to Biodiversity Elio de Almeida Borghezan1,2*, Tiago Henrique da Silva Pires2, Takehide Ikeda1, Jansen Zuanon2 and Shiro Kohshima1 1 Wildlife Research Center of Kyoto University, Kyoto, Japan, 2 Laboratório de Ecologia Comportamental e Evolução, Coordenação de Biodiversidade, Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil The Amazon has the highest richness of freshwater organisms in the world, which has led to a multitude of hypotheses on the mechanisms that generated this biodiversity. However, most of these hypotheses focus on the spatial distance of populations, a framework that fails to provide an explicit mechanism of speciation. Ecological conditions in Amazon freshwaters can be strikingly distinct, as it has been recognized since Alfred Russel Wallace’s categorization into black, white, and blue (= clear) Edited by: waters. Water types reflect differences in turbidity, dissolved organic matter, electrical Fabricio Beggiato Baccaro, conductivity, pH, amount of nutrients and lighting environment, characteristics that Federal University of Amazonas, Brazil directly affect the sensory abilities of aquatic organisms. Since natural selection Reviewed by: Fernando Dagosta, drives evolution of sensory systems to function optimally according to environmental Federal University of Grande conditions, the sensory systems of Amazon freshwater organisms are expected to vary Dourados, Brazil Luciano F. A. Montag, according to their environment. When differences in sensory systems affect chances Federal University of Pará, Brazil of interbreeding between populations, local adaptations may result in speciation. -
Early Learning Influences Species Assortative Mating Preferences In
Biol. Lett. (2007) 3, 134–136 than most scenarios involving a genetic background doi:10.1098/rsbl.2006.0601 for mate preferences (Felsenstein 1981; Irwin & Price Published online 7 February 2007 1999; Verzijden et al. 2005). Such early learning of a Animal behaviour sexual preference is known as sexual imprinting. It is prevalent in birds (ten Cate & Vos 1999) and is also documented in mammals (Kendrick et al.1998). Early learning influences Females of haplochromine cichlid species show mouth brooding and continued protection of the species assortative mating brood after hatching. This might provide the offspring the opportunity to learn specific characters of their preferences in Lake mother. A few studies have addressed imprinting in cichlids (Siepen & Crapon de Caprona 1986; Barlow Victoria cichlid fish et al. 1990) but so far no clear examples of parental Machteld N. Verzijden* and Carel ten Cate sexual imprinting in fish are known. Sexual imprinting Behavioural Biology, Leiden University, PO Box 9516, could promote the evolution of reproductive isolation, 2300 RA Leiden, The Netherlands as it would strongly link phenotype to mate preference. *Author for correspondence ([email protected] ). Here, we test whether mate preferences in females of The Lake Victoria ‘species flock’ of cichlids is two Lake Victoria haplochromine cichlid species are puzzling because reproductive isolation often affected by their mothers’ phenotype. occurs in the absence of substantial ecological The closely related species pair Pundamilia punda- differences among species. Theory predicts that milia and Pundamilia nyererei is a model for the study this cannot evolve with most genetic mechanisms of mate preferences and reproductive isolation in for mate choice. -
A Test of Genetic Association Among Male Nuptial Coloration, Female Mating Preference, and Male Aggression Bias Within a Polymorphic Population of Cichlid Fish
Current Zoology 59 (2): –, 2013 A test of genetic association among male nuptial coloration, female mating preference, and male aggression bias within a polymorphic population of cichlid fish Inke van der SLUIJS1*, Peter D. DIJKSTRA2, Charlotte M. LINDEYER1, Bertanne VISSER1, Alan M. SMITH3, Ton G. G. GROOTHUIS4, Jacques J. M. van ALPHEN1, Ole SEEHAUSEN5,6 1 Department of Animal Ecology, Institute of Biology, Leiden University, PO Box 9516, 2300 RA Leiden, The Netherlands 2 The University of Texas at Austin, Section of Integrative Biology, 1 University Station–C0930, Austin, TX 78712, United States 3 Department of Biological Sciences, University of Hull, Cottingham Road, Hull, HU6 7RX, United Kingdom 4 Behavioural Biology Group, University of Groningen, P.O. Box 14, 9750 AA Haren, The Netherlands 5 Institute of Zoology, University of Bern, Baltzerstrasse 6, CH-3012 Bern, Switzerland 6 Eawag, Swiss Federal Institute for Aquatic Science and Technology, Centre of Ecology, Evolution & Biogeochemistry, Depart- ment of Fish Ecology & Evolution, Seestrasse 97, 6047 Kastanienbaum, Switzerland Abstract Both inter- and intrasexual selection have been implicated in the origin and maintenance of species-rich taxa with di- verse sexual traits. Simultaneous disruptive selection by female mate choice and male-male competition can, in theory, lead to speciation without geographical isolation if both act on the same male trait. Female mate choice can generate discontinuities in gene flow, while male-male competition can generate negative frequency-dependent selection stabilizing the male trait polymor- phism. Speciation may be facilitated when mating preference and/or aggression bias are physically linked to the trait they operate on. We tested for genetic associations among female mating preference, male aggression bias and male coloration in the Lake Victoria cichlid Pundamilia. -
WHITAKER-DISSERTATION.Pdf (11.45Mb)
The Dissertation Committee for Keith William Whitaker certifies that this is the approved version of the following dissertation: Plasticity in the Startle-Escape Response of the African Cichlid Fish, Astatotilapia burtoni Committee: Hans Hofmann, Supervisor Jennifer Morgan Michael Ryan Thomas Preuss Harold Zakon Plasticity in the Startle-Escape Response of the African Cichlid Fish, Astatotilapia burtoni by Keith W. Whitaker, B.S. Dissertation Presented to the Faculty of the Graduate School of The University of Texas at Austin in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy The University of Texas at Austin December 2011 Dedication This thesis is dedicated to my daughter, Vivianne. Thanks for letting daddy finish this before being born. See you soon. Thanks for the long naps that allowed daddy to finish his thesis! Acknowledgements My success in graduate school would not have been possible without the encouragement of my family. I don’t know what my life would be without my wife, Leslie Whitaker, who has contributed to my success with support and constructive criticism while working on her own research. You are amazing. Much of my thesis was done in collaboration with other labs, which has been noted on the relevant chapters. In addition to their research, Thomas Preuss, Heike Neumeister, Michael Kidd, Celeste Kidd and Lauren O’Connell (née Munchrath) contributed significantly to my education and training. Thanks. A number of people have given me advice throughout graduate school and I cannot name them all. Thank you to my research supervisor, Hans Hofmann for the opportunities to learn and develop.