Exploring the Evolution of Colour Patterns in Caecilian Amphibians
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New State Records for Amphibians and Reptiles from Colima, Mexico
STORERIA OCCIPITOMACULATA OCCIPITOMACULATA Herpetological Review, 2009, 40(1), 117–120. (Northern Red-bellied Snake). USA: IOWA: CHICKASAW CO.: © 2009 by Society for the Study of Amphibians and Reptiles Newell Road 0.2 km N of State Hwy 24 (43.0616°N, 92.2797°W; WGS84). 04 October 2007. Terry J. VanDeWalle. Verifi ed by James New State Records for Amphibians and Reptiles L. Christiansen. DOR specimen deposited in the Drake University from Colima, Mexico Research Collection (DRUC 7298). New county record. Although species is known from a number of adjacent counties, this specimen fi lls a gap in the distributional data in this portion of the state (J. JACOBO REYES-VELASCO* Centro Universitario de Ciencias Biologicas y Agropecuarias L. Christiansen, pers. comm.; http://www.herpnet.net/Iowa-Her- Carretera a Nogales Km. 15.5. Las Agujas, Nextipac, Zapopan, Jalisco, Mexico petology/). The closest record for this species found in the DRUC e-mail: [email protected] is from Bremer County 32.3 km to the south. Submitted by TERRY J. VANDEWALLE (e-mail: ISRAEL ALEXANDER HERMOSILLO-LOPEZ Centro Universitario de Ciencias Biologicas y Agropecuarias [email protected]), and STACEY J. CARLSON, Natu- Carretera a Nogales Km. 15.5. Las Agujas, Nextipac, Zapopan, Jalisco, Mexico ral Resources Consulting, Inc., 2300 Swan Lake Blvd., Suite 200, e-mail: [email protected] Independence, Iowa 50644, USA. CHRISTOPH I. GRÜNWALD 450 Jolina Way. Encinitas California 92024, USA TANTILLA HOBARTSMITHI (Smith’s Black-headed Snake). e-mail: [email protected] USA: TEXAS: IRION CO.: 2.2 air miles SW of Barnhart on CR311 (31.1134667ºN, 101.2040667ºW). -
ENDOGENOUS RETROVIRUSES in PRIMATES Katherine Brown Bsc
ENDOGENOUS RETROVIRUSES IN PRIMATES Katherine Brown BSc, MSc Thesis submitted to the University of Nottingham for the degree of Doctor of Philosophy July 2015 Abstract Numerous endogenous retroviruses (ERVs) are found in all mammalian genomes, for example, they are the source of approximately 8% of all human and chimpanzee genetic material. These insertions represent retroviruses which have, by chance, integrated into the germline and so are transmitted vertically from parents to offspring. The human genome is rich in ERVs, which have been characterised in some detail. However, in many non-human primates these insertions have not been well- studied. ERVs are subject to the mutation rate of their host, rather than the faster retrovirus mutation rate, so they change much more slowly than exogenous retroviruses. This means ERVs provide a snapshot of the retroviruses a host has been exposed to during its evolutionary history, including retroviruses which are no longer circulating and for which sequence information would otherwise be lost. ERVs have many effects on their hosts; they can be co-opted for functional roles, they provide regions of sequence similarity where mispairing can occur, their insertion can disrupt genes and they provide regulatory elements for existing genes. Accurate annotation and characterisation of these regions is an important step in interpreting the huge amount of genetic information available for increasing numbers of organisms. This project represents an extensive study into the diversity of ERVs in the genomes of primates and related ERVs in rodents. Lagomorphs (rabbits and hares) and tree shrews are also analysed, as the closest relatives of primates and rodents. -
Xenosaurus Phalaroanthereon Nieto-Montes De Oca, Campbell, and Flores-Villela, 2001
Xenosaurus phalaroanthereon Nieto-Montes de Oca, Campbell, and Flores-Villela, 2001. This knob-scaled lizard is endemic to the state of Oaxaca, where it occurs in the Montañas y Valles del Centro and Sierra Madre del Sur physiographic provinces at elevations from 1,670 (García- Padilla and Mata-Silva, 2014) to 2,185 m. Individuals of this live-bearing species occupy the interior of crevices, usually singly, in small granite boulders located on hillsides covered with oak and pine-oak forest. Populations persist, however, at sites converted to agricultural use, such as cornfields (Lemos-Espinal and Smith, 2005). Its EVS is calculated as 16, which places it in the middle portion of the high vulnerability category (Wilson et al., 2013a), and its IUCN status is Data Deficient. This species is one of 10 members of the monogeneric family Xenosauridae, which is endemic to Mesoamerica. All but one of the species is endemic to Mexico. ' © Elí García-Padilla 5 www.mesoamericanherpetology.com www.eaglemountainpublishing.com The herpetofauna of Oaxaca, Mexico: composition, physiographic distribution, and conservation status VICENTE MATA-SILVA1, JERRY D. JOHNSON1, LARRY DAVID WILSON2, AND ELÍ GARCÍA-PADILLA3 1Department of Biological Sciences, The University of Texas at El Paso, El Paso, Texas 79968-0500, United States. E-mail: [email protected] (Corresponding author); [email protected] 2Centro Zamorano de Biodiversidad, Escuela Agrícola Panamericana Zamorano, Departamento de Francisco Morazán, Honduras. E-mail: [email protected] 3Oaxaca de Juárez, Oaxaca 68023, Mexico. E-mail: [email protected] ABSTRACT: The herpetofauna of Oaxaca is the largest of any state in Mexico, consisting of 106 anurans, 41 salamanders, two caecilians, three crocodylians, 271 squamates, and 19 turtles (total 442 species). -
REVISION O F the AFRICAN Caeclllan GENUS
REVISION OFTHE AFRICAN CAEClLlAN GENUS SCHISTOMETOPUM PARKER (AMPH IBIA: CYMNOPHIONA: CAECILI IDAE) BY RONALD A. NU AND MICHAEL E. PFRENDER MISCELLANEC JS PUBLICATIONS MUSEUM OF ZOOLOGY, UNIVERSITY OF MICHIGAN, NO. 18Fb; ' Ann Arbor, September 2 7, 1 998 ISSN 076-8405 MIS(:ELIANEOUS PUBLICATIONS MUSEUM OF ZOOLOGY, LJNTVERSITY OF MICHIGAN NO. 187 The publicatioils of the M~~sclunof Zoology, The [Jniversity of Michigan, consist PI-irnarilyof two series-the Occasion:~lPapers allti the Miscellaneous Publicatio~ls.Both series were founded by Dc Bryant Walker, Mr. Rradshaw H. Swales, anti Dr. W.W. Newcornb. Occasionally the Museuni publishes contributiorls outside of these series; begirlnirlg in 1990 these are titled Special Publicatio~lsa~ld arc numbered. All submitted ~n;inl~scriptsreceive external review. The Misccllarieous Publications, which include ~l~ollographicstltdies, papers on field and ~II- seuln techniques, and other contributions 11ot within the scope of the Occasio~lalPapers, are pl~b- lishcd separately. It is not intended that they be grouped into volumes. Each 11r11nberhas a title page and, when necessary, a table of co1itelits. Tllc Occasional Papel-s, publication of which was begun in 1913, servc as a medium Sol- original studies based prirlcipally upon the collections in the Museurn. They are issurtl separately. MThen a sufficient number of pages has hcen printed to niakc a volume, a title pagc, table of contenb, and an index are supplied to libraries and individuals on the mailing list for the series. A cornplete list of publications on Birds, Fishes, Insects, Mammals, Moll~~sks,Rcpdles and Amphib- ians, and other topics is available. Address inquiries to the Directt)r, Muse~unof Zoolohy, The lir~ivcr- sity of Michigan, Ann Arbor, Michigarl 48109-1079. -
Amphibian Alliance for Zero Extinction Sites in Chiapas and Oaxaca
Amphibian Alliance for Zero Extinction Sites in Chiapas and Oaxaca John F. Lamoreux, Meghan W. McKnight, and Rodolfo Cabrera Hernandez Occasional Paper of the IUCN Species Survival Commission No. 53 Amphibian Alliance for Zero Extinction Sites in Chiapas and Oaxaca John F. Lamoreux, Meghan W. McKnight, and Rodolfo Cabrera Hernandez Occasional Paper of the IUCN Species Survival Commission No. 53 The designation of geographical entities in this book, and the presentation of the material, do not imply the expression of any opinion whatsoever on the part of IUCN concerning the legal status of any country, territory, or area, or of its authorities, or concerning the delimitation of its frontiers or boundaries. The views expressed in this publication do not necessarily reflect those of IUCN or other participating organizations. Published by: IUCN, Gland, Switzerland Copyright: © 2015 International Union for Conservation of Nature and Natural Resources Reproduction of this publication for educational or other non-commercial purposes is authorized without prior written permission from the copyright holder provided the source is fully acknowledged. Reproduction of this publication for resale or other commercial purposes is prohibited without prior written permission of the copyright holder. Citation: Lamoreux, J. F., McKnight, M. W., and R. Cabrera Hernandez (2015). Amphibian Alliance for Zero Extinction Sites in Chiapas and Oaxaca. Gland, Switzerland: IUCN. xxiv + 320pp. ISBN: 978-2-8317-1717-3 DOI: 10.2305/IUCN.CH.2015.SSC-OP.53.en Cover photographs: Totontepec landscape; new Plectrohyla species, Ixalotriton niger, Concepción Pápalo, Thorius minutissimus, Craugastor pozo (panels, left to right) Back cover photograph: Collecting in Chamula, Chiapas Photo credits: The cover photographs were taken by the authors under grant agreements with the two main project funders: NGS and CEPF. -
Anfibios Y Reptiles Del Estado De Jalisco
Anfibios y reptiles del estado de Jalisco Análisis espacial, distribución y conservación UNIVERSIDAD DE GUADALAJARA Itzcóatl Tonatiuh Bravo Padilla Rector General Miguel Ángel Navarro Navarro Vicerrector Ejecutivo José Alfredo Peña Ramos Secretario General Centro Universitario de la Costa Marco Antonio Cortés Guardado Rector del CUC Remberto Castro Castañeda Secretario Académico Gloria Angélica Hernández Obledo Secretaria Administrativa Anfibios y reptiles del estado de Jalisco Análisis espacial, distribución y conservación Sandra Marlen Chávez-Avila Gustavo Casas-Andreu Andrés García-Aguayo Juan Luis Cifuentes-Lemus Fabio Germán Cupul-Magaña Universidad de Guadalajara 2015 Foto de portada: Sceloporus bulleri de Petr Myska. Primera edición, 2015 D.R. © 2015 Universidad de Guadalajara Centro Universitario de la Costa Av. Universidad 203, Delegación Ixtapa 48280 Puerto Vallarta, Jalisco ISBN: 978-607-742-318-8 Impreso y hecho en México Printed and made in Mexico Contenido I. ¿A qué llamamos anfibios y reptiles? 7 II. La importancia de los anfibios y los reptiles 11 III. La herpetofauna mexicana 13 IV. El análisis espacial y los modelos de distribución potencial 15 V. El contexto geográfico del estado de Jalisco y su diversidad biológica 17 VI. Un recuento de los estudios herpetológicos en Jalisco 21 VII. Lista y mapas de distribución de especies de anfibios y reptiles de Jalisco 25 VIII. Estructura de la base de datos 29 IX. Análisis espacial 33 X. Modelos de distribución potencial 41 XI. Sitios prioritarios para su conservación 47 XII. Consideraciones sobre la diversidad y distribución de la herpetofauna de Jalisco 49 XIII. Literatura citada 59 Anexo 1. Lista de la herpetofauna de Jalisco 78 Anexo 2. -
Amphibiaweb's Illustrated Amphibians of the Earth
AmphibiaWeb's Illustrated Amphibians of the Earth Created and Illustrated by the 2020-2021 AmphibiaWeb URAP Team: Alice Drozd, Arjun Mehta, Ash Reining, Kira Wiesinger, and Ann T. Chang This introduction to amphibians was written by University of California, Berkeley AmphibiaWeb Undergraduate Research Apprentices for people who love amphibians. Thank you to the many AmphibiaWeb apprentices over the last 21 years for their efforts. Edited by members of the AmphibiaWeb Steering Committee CC BY-NC-SA 2 Dedicated in loving memory of David B. Wake Founding Director of AmphibiaWeb (8 June 1936 - 29 April 2021) Dave Wake was a dedicated amphibian biologist who mentored and educated countless people. With the launch of AmphibiaWeb in 2000, Dave sought to bring the conservation science and basic fact-based biology of all amphibians to a single place where everyone could access the information freely. Until his last day, David remained a tirelessly dedicated scientist and ally of the amphibians of the world. 3 Table of Contents What are Amphibians? Their Characteristics ...................................................................................... 7 Orders of Amphibians.................................................................................... 7 Where are Amphibians? Where are Amphibians? ............................................................................... 9 What are Bioregions? ..................................................................................10 Conservation of Amphibians Why Save Amphibians? ............................................................................. -
Pseudoeurycea Naucampatepetl. the Cofre De Perote Salamander Is Endemic to the Sierra Madre Oriental of Eastern Mexico. This
Pseudoeurycea naucampatepetl. The Cofre de Perote salamander is endemic to the Sierra Madre Oriental of eastern Mexico. This relatively large salamander (reported to attain a total length of 150 mm) is recorded only from, “a narrow ridge extending east from Cofre de Perote and terminating [on] a small peak (Cerro Volcancillo) at the type locality,” in central Veracruz, at elevations from 2,500 to 3,000 m (Amphibian Species of the World website). Pseudoeurycea naucampatepetl has been assigned to the P. bellii complex of the P. bellii group (Raffaëlli 2007) and is considered most closely related to P. gigantea, a species endemic to the La specimens and has not been seen for 20 years, despite thorough surveys in 2003 and 2004 (EDGE; www.edgeofexistence.org), and thus it might be extinct. The habitat at the type locality (pine-oak forest with abundant bunch grass) lies within Lower Montane Wet Forest (Wilson and Johnson 2010; IUCN Red List website [accessed 21 April 2013]). The known specimens were “found beneath the surface of roadside banks” (www.edgeofexistence.org) along the road to Las Lajas Microwave Station, 15 kilometers (by road) south of Highway 140 from Las Vigas, Veracruz (Amphibian Species of the World website). This species is terrestrial and presumed to reproduce by direct development. Pseudoeurycea naucampatepetl is placed as number 89 in the top 100 Evolutionarily Distinct and Globally Endangered amphib- ians (EDGE; www.edgeofexistence.org). We calculated this animal’s EVS as 17, which is in the middle of the high vulnerability category (see text for explanation), and its IUCN status has been assessed as Critically Endangered. -
Correction (934.7Kb)
Correction Correction: Population Genetics of the Sa˜o Tome´ Caecilian (Gymnophiona: Dermophiidae: Schistometopum thomense) Reveals Strong Geographic Structuring The PLOS ONE Staff The parameter name in the Materials and Methods section and Results section are incorrectly formatted. In all cases, the correct parameter name is Fu’s Fs. The genetic variability measure in the Results section is incorrectly formatted. The correct genetic variability measure is FST. The Figure 1 legend is incorrect. The word ‘‘Red’’ should be ‘‘Black’’ in the last sentence. The authors have provided a corrected version here. Citation: The PLOS ONE Staff (2014) Correction: Population Genetics of the Sa˜o Tome´ Caecilian (Gymnophiona: Dermophiidae: Schistometopum thomense) Reveals Strong Geographic Structuring. PLoS ONE 9(12): e116005. doi:10.1371/ journal.pone.0116005 Published December 15, 2014 Copyright: ß 2014 The PLOS ONE Staff. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. PLOS ONE | www.plosone.org 1 December 2014 | Volume 9 | Issue 12 | e116005 Figure 1. Schistometopum thomense collection localities, Sa˜o Tome´, Republic of Sa˜o Tome´ and Prı´ncipe. Numbers in parentheses indicate number of specimens available for genetic analyses. Legend indicates specimens used in Splits Tree, Bayesian, SAMOVA, and/or IMa2 analyses, or discussed by Nussbaum and Pfrender [36] in morphological comparisons. Dashed, red ovals indicate populations lumped for SAMOVA analyses. Photographs show examples of clear and flecked morphs as Schistometopum thomense and Schistometopum ‘‘ephele’’, respectively. Red star in lower left panel indicates relative position of Sa˜o Tome´ to continental Africa. -
Downloaded on 24 September 2013
ISSN 2320-5407 International Journal of Advanced Research (2014), Volume 2, Issue 1, 802-809 Journal homepage: http://www.journalijar.com INTERNATIONAL JOURNAL OF ADVANCED RESEARCH RESEARCH ARTICLE Karyology of the East African caecilian Schistometopum gregorii (Amphibia: Gymnophiona) from the Tana River Delta, Kenya Venu Govindappa Centre for Applied Genetics, Department of Zoology, Bangalore University, Bangalore, Karnataka, India. Manuscript Info Abstract Manuscript History: This report presents a male somatic karyotype (2N=22; FN=40) and late meiotic stages of Schistometopum gregorii that seems to fall in line with that Received: 11 November 2013 Final Accepted: 22 December 2013 of other taxa of the family Dermophiidae. In view of a different basic Published Online: January 2014 chromosome number prevailing for this species as well for this group, it appears possible to predict that this East African species posits more closely Key words: related towards Indian endemic Indotyphlidae. Schistometopum gregorii, Giemsa stained chromosomes, meiosis, karyotype. Copy Right, IJAR, 2014,. All rights reserved. Introduction Caecilians are the limbless and elongate amphibians that form the third extant order of Amphibia and are recognised by approximately 190 species (Frost, 2013; Nishikawa et al., 2013). They are sparsely distributed in the wet or moist tropics (except Madagascar) east of the Wallace line (Himstedt, 1996; Kamei et al., 2012). African caecilians (excluding the Seychelles) are represented by about 21 species (Gower et al., 2005), most of which are known from the Eastern Arc Mountains and Coastal Forests biodiversity hotspots (Myers et al., 2000). The coastal forests of eastern Africa contain remarkable levels of biodiversity which have been formally recognised by their reclassification into the Coastal Forests of Eastern Africa, while the Eastern Arc Mountains have been included in the larger Eastern Afromotane hotspot (Myers, 2003; Wilkinson and Nussbaum, 2006; Wilkinson et al., 2003). -
Biogeographic Analysis Reveals Ancient Continental Vicariance and Recent Oceanic Dispersal in Amphibians ∗ R
Syst. Biol. 63(5):779–797, 2014 © The Author(s) 2014. Published by Oxford University Press, on behalf of the Society of Systematic Biologists. All rights reserved. For Permissions, please email: [email protected] DOI:10.1093/sysbio/syu042 Advance Access publication June 19, 2014 Biogeographic Analysis Reveals Ancient Continental Vicariance and Recent Oceanic Dispersal in Amphibians ∗ R. ALEXANDER PYRON Department of Biological Sciences, The George Washington University, 2023 G Street NW, Washington, DC 20052, USA; ∗ Correspondence to be sent to: Department of Biological Sciences, The George Washington University, 2023 G Street NW, Washington, DC 20052, USA; E-mail: [email protected]. Received 13 February 2014; reviews returned 17 April 2014; accepted 13 June 2014 Downloaded from Associate Editor: Adrian Paterson Abstract.—Amphibia comprises over 7000 extant species distributed in almost every ecosystem on every continent except Antarctica. Most species also show high specificity for particular habitats, biomes, or climatic niches, seemingly rendering long-distance dispersal unlikely. Indeed, many lineages still seem to show the signature of their Pangaean origin, approximately 300 Ma later. To date, no study has attempted a large-scale historical-biogeographic analysis of the group to understand the distribution of extant lineages. Here, I use an updated chronogram containing 3309 species (~45% of http://sysbio.oxfordjournals.org/ extant diversity) to reconstruct their movement between 12 global ecoregions. I find that Pangaean origin and subsequent Laurasian and Gondwanan fragmentation explain a large proportion of patterns in the distribution of extant species. However, dispersal during the Cenozoic, likely across land bridges or short distances across oceans, has also exerted a strong influence. -
Towards Evidence-Based Husbandry for Caecilian Amphibians: Substrate Preference in Geotrypetes Seraphini (Amphibia: Gymnophiona: Dermophiidae)
RESEARCH ARTICLE The Herpetological Bulletin 129, 2014: 15-18 Towards evidence-based husbandry for caecilian amphibians: Substrate preference in Geotrypetes seraphini (Amphibia: Gymnophiona: Dermophiidae) BENJAMIN TAPLEY1*, ZOE BRYANT1, SEBASTIAN GRANT1, GRANT KOTHER1, YEDRA FEL- TRER1, NIC MASTERS1, TAINA STRIKE1, IRI GILL1, MARK WILKINSON2 & DAVID J GOWER2 1Zoological Society of London, Regents Park, London NW1 4RY 2Department of Life Sciences, The Natural History Museum, Cromwell Road, London, SW7 5BD *Corresponding author email: [email protected] ABSTRACT - Maintaining caecilians in captivity provides opportunities to study life-history, behaviour and reproductive biology and to investigate and to develop treatment protocols for amphibian chytridiomycosis. Few species of caecilians are maintained in captivity and little has been published on their husbandry. We present data on substrate preference in a group of eight Central African Geotrypetes seraphini (Duméril, 1859). Two substrates were trialled; coir and Megazorb (a waste product from the paper making industry). G. seraphini showed a strong preference for the Megazorb. We anticipate this finding will improve the captive management of this and perhaps also other species of fossorial caecilians, and stimulate evidence-based husbandry practices. INTRODUCTION (Gower & Wilkinson, 2005) and little has been published on the captive husbandry of terrestrial caecilians (Wake, 1994; O’ Reilly, 1996). A basic parameter in terrestrial The paucity of information on caecilian ecology and caecilian husbandry is substrate, but data on tolerances and general neglect of their conservation needs should be of preferences in the wild or in captivity are mostly lacking. concern in light of global amphibian declines (Alford & Terrestrial caecilians are reported from a wide range of Richards 1999; Stuart et al., 2004; Gower & Wilkinson, soil pH (Gundappa et al., 1981; Wake, 1994; Kupfer et 2005).