Worldwide Polymorphism at the MC1R Locus and Normal Pigmentation Variation in Humans
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Peptides 26 (2005) 1901–1908 Review Worldwide polymorphism at the MC1R locus and normal pigmentation variation in humans Kateryna Makova a,∗, Heather Norton b a Department of Biology, The Pennsylvania State University, 518 Mueller Lab, University Park, PA 16802, USA b Department of Anthropology, The Pennsylvania State University, 409 Carpenter Building, University Park, PA 16802, USA Received 20 August 2004; accepted 16 December 2004 Available online 23 June 2005 Abstract While there have been many advances in our understanding of the genetics of pathological skin pigmentation in humans, our knowledge about what determines variation in normal skin color is still incomplete. Variation in one gene, melanocortin 1 receptor (MC1R), has been associated with red hair and fair skin in Europeans. However, this gene might also play an important role in shaping pigmentation of other human populations, where it experiences different selective pressures. Below we review what is currently known about polymorphism and selection at the MC1R coding and promoter regions in human populations, the pattern of MC1R evolution in nonhuman primates, and the interaction of MC1R with other genes. © 2005 Elsevier Inc. All rights reserved. Keywords: MC1R; Pigmentation; Natural selection; Human evolution Contents 1. Introduction .................................................................................................... 1901 2. Polymorphism of MC1R in human populations: coding region ....................................................... 1902 2.1. European populations...................................................................................... 1902 2.2. Asian populations ......................................................................................... 1903 2.3. African populations ....................................................................................... 1904 3. Polymorphism of MC1R in human populations: promoter ........................................................... 1904 4. MC1R evolution in primates ...................................................................................... 1905 5. Interactions between MC1R and other genes in human populations ................................................... 1905 6. Future directions ................................................................................................ 1906 Acknowledgements.............................................................................................. 1907 References ..................................................................................................... 1907 1. Introduction This variation has long intrigued geneticists and anthro- pologists, especially because it is believed to have been Human skin and hair pigmentation are complex traits shaped, at least in part, by the action of natural selection that show variation both within and between populations. (e.g. [7,22,24,33,55]). While genes responsible for pigmenta- tion disorders such as albinism have been known for nearly a decade (for a review, see [20]), it is only recently that we have ∗ Corresponding author. Tel.: +1 814 863 1619; fax: +1 814 865 9131. developed a better understanding of the genetic basis under- E-mail address: [email protected] (K. Makova). lying normal variation in human skin and hair pigmentation. 0196-9781/$ – see front matter © 2005 Elsevier Inc. All rights reserved. doi:10.1016/j.peptides.2004.12.032 1902 K. Makova, H. Norton / Peptides 26 (2005) 1901–1908 The major breakthrough in this area was due to the discovery MC1R isoform is a 317-amino acid 7 pass transmembrane of mutations in the melanocortin 1 receptor (MC1R) gene that protein. Mutagenesis studies of other MCRs suggest that the are associated with normal variation in skin color [53]. The transmembrane domains TM1, TM2, TM3, TM6, and TM7 MC1R is a cell-surface receptor of melanocytes and a major are likely to contain the MC1R’s primary hormone-binding player in the melanin production pathway. The MC1R gene sites [39–41]. Robbins et al. [38] identified two gain-of- has been observed to regulate the switch between the pro- function point mutations in this region in the mouse, and duction of eumelanin (brown/black pigment) and pheome- human MC1R polymorphisms associated with red hair and lanin. Eumelanin together with pheomelanin (red/yellow fair skin have been observed here as well (e.g. [35,53]). pigment) constitute the two main pigments of the skin Like other G protein-coupled receptors, MC1R signal trans- and hair. duction is mediated via the GTP-binding protein to acti- The melanocortin 1 receptor belongs to a family of vate adenylyl cyclase and increase levels of cellular cAMP. G protein-coupled receptors known as the melanocortin Intracellular loops of G protein-coupled receptors are nec- receptors (MCRs). In mammals, the MC1R responds to ␣- essary for protein interactions with GTP-binding proteins, melanocyte-stimulating hormone (␣-MSH) and adrenocor- suggesting that these may be key functional regions of the ticotropic hormone (ACTH), both products of proopiome- MC1R. Mutations having an effect on pigmentation pheno- lanocortin (POMC). When the MC1R is activated by ␣-MSH, type have in fact been found in the second intracellular loop intracellular cAMP levels are increased via activation of [13]. adenylyl cyclase, leading to the production of elevated levels In the mouse, loss of function mutations at exten- of tyrosinase and ultimately to the production of brown/black sion lead to a yellow coat phenotype due to the over- eumelanin (Fig. 1). However, the antagonistic agouti signal- production of pheomelanin relative to eumelanin, while ing protein (ASIP) can compete with ␣-MSH for binding gain of function mutations at extension are associated with to the MC1R. When ASIP is able to completely block or melanic morphs [38]. Extension is also responsible for eume- inhibit ␣-MSH, pheomelanin is produced instead of eume- lanin/pheomelanin production in other mammals, such as lanin (Fig. 1). horses, dogs, pigs and sheep, as well as in birds (e.g. The human MC1R gene, located at chromosome 16q24.3 [18,38,52]). [14], has an open reading frame of 951 bp and until recently The human MC1R gene has been shown to be highly was thought to be composed of a single exon. However, Tan polymorphic (e.g. [6,15,35,47,53]) with many variants being et al. [51] identified an alternative mRNA splice variant at associated with a red hair/fair skin phenotype. Mutations in the 3 end of the gene. This “long” MC1R isoform (MC1RB) MC1R have also been associated with poor tanning ability contains a second exon encoding 65 amino acids, although and an increased risk of skin cancers, possibly since pheome- the functional significance of this alternative form is currently lanin can produce free radicals in the presence of ultraviolet unknown. radiation (UVR) and thus have deleterious effects on the The MC1R gene maps to the murine extension locus melanocytes [23,32]. and is expressed in a number of cell types, most notably There are a number of excellent reviews that focus on the melanocytes. The protein encoded by the “short” human relationship between the MC1R genotype and the red hair phenotype (e.g. [36,37,50]). In contrast, this review will focus on MC1R polymorphism across the entire human species (rather than limiting our discussion to variation in European populations), the role of selection in shaping MC1R diver- sity, and MC1R polymorphism and evolution in non-human primates. 2. Polymorphism of MC1R in human populations: coding region 2.1. European populations Early reports indicated an association between the MC1R variants and a red hair/light skin phenotype. By screening 30 red-haired individuals, Valverde et al. [53] identified nine different changes in the MC1R coding region, all leading to amino acid substitutions. Frequently, there were two amino Fig. 1. Diagram of the alternate effects of the binding of ␣-MSH or ASIP to the melanocortin 1 receptor. Binding of ␣-MSH leads to the production of acid mutations within the same allele. Eight of these substitu- brown/black eumelanin, while binding of the antagonistic ligand ASIP leads tions span the second transmembrane domain of the MC1R. to the production of red/yellow pheomelanin. Another study investigated twins with red hair and identified K. Makova, H. Norton / Peptides 26 (2005) 1901–1908 1903 11 additional amino acid variants at the MC1R [6]. Three at most other genomic regions investigated in non-Africans substitutions were significantly associated with red hair. [34]. Note that this variation is mostly nonsynonymous. Interestingly, in several cases, dizygotic twins possessing Two alternative theories were proposed to explain the identical MC1R alleles had discordant hair color, suggesting high level of MC1R polymorphism in Europeans. First, Rana that the MC1R gene cannot be solely responsible for the red et al. [35] suggested that this might support the vitamin D hair phenotype [6]. A more detailed study was later conducted hypothesis [9,22]. Vitamin D is produced by photoconver- in Irish populations [47], again providing evidence of signif- sion of 7-dehydrocholesterol in skin capillaries. In regions icant association of MC1R variants with red hair. Currently of low sunlight, light skin can be advantageous, as it allows more than 30 variant alleles have been reported for European more ultraviolet radiation to penetrate through the skin pre- populations with nine variants being at high frequency (each venting vitamin D deficiency and