Dinitrogen Coordination Chemistry: on the Biomimetic Borderlands
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Organic Ligand Complexation Reactions On
Organic ligand complexation reactions on aluminium-bearing mineral surfaces studied via in-situ Multiple Internal Reflection Infrared Spectroscopy, adsorption experiments, and surface complexation modelling A thesis submitted to the University of Manchester for the degree of Doctor of Philosophy in the Faculty of Engineering and Physical Sciences 2010 Charalambos Assos School of Earth, Atmospheric and Environmental Sciences Table of Contents LIST OF FIGURES ......................................................................................................4 LIST OF TABLES ........................................................................................................8 ABSTRACT.................................................................................................................10 DECLARATION.........................................................................................................11 COPYRIGHT STATEMENT....................................................................................12 CHAPTER 1 INTRODUCTION ...............................................................................13 AIMS AND OBJECTIVES .................................................................................................38 CHAPTER 2 THE USE OF IR SPECTROSCOPY IN THE STUDY OF ORGANIC LIGAND SURFACE COMPLEXATION............................................40 INTRODUCTION.............................................................................................................40 METHODOLOGY ...........................................................................................................44 -
Crystal Field Theory (CFT)
Crystal Field Theory (CFT) The bonding of transition metal complexes can be explained by two approaches: crystal field theory and molecular orbital theory. Molecular orbital theory takes a covalent approach, and considers the overlap of d-orbitals with orbitals on the ligands to form molecular orbitals; this is not covered on this site. Crystal field theory takes the ionic approach and considers the ligands as point charges around a central metal positive ion, ignoring any covalent interactions. The negative charge on the ligands is repelled by electrons in the d-orbitals of the metal. The orientation of the d orbitals with respect to the ligands around the central metal ion is important, and can be used to explain why the five d-orbitals are not degenerate (= at the same energy). Whether the d orbitals point along or in between the cartesian axes determines how the orbitals are split into groups of different energies. Why is it required? The valence bond approach could not explain the Electronic spectra, Magnetic moments, Reaction mechanisms of the complexes. Assumptions of CFT: 1. The central Metal cation is surrounded by ligand which contain one or more lone pair of electrons. 2. The ionic ligand (F-, Cl- etc.) are regarded as point charges and neutral molecules (H2O, NH3 etc.) as point dipoles. 3. The electrons of ligand does not enter metal orbital. Thus there is no orbital overlap takes place. 4. The bonding between metal and ligand is purely electrostatic i.e. only ionic interaction. The approach taken uses classical potential energy equations that take into account the attractive and repulsive interactions between charged particles (that is, Coulomb's Law interactions). -
Preparation and Characterization of Iridium Hydride and Dihydrogen Complexes Relevant to Biomass Deoxygenation
Preparation and Characterization of Iridium Hydride and Dihydrogen Complexes Relevant to Biomass Deoxygenation Jonathan M. Goldberg A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy University of Washington 2017 Reading Committee: D. Michael Heinekey, Chair Karen I. Goldberg, Chair Brandi M. Cossairt Program Authorized to Offer Degree: Department of Chemistry © Copyright 2017 Jonathan M. Goldberg University of Washington Abstract Preparation and Characterization of Iridium Hydride and Dihydrogen Complexes Relevant to Biomass Deoxygenation Jonathan M. Goldberg Chairs of the Supervisory Committee: Professor D. Michael Heinekey Professor Karen I. Goldberg Department of Chemistry This thesis describes the fundamental organometallic reactivity of iridium pincer complexes and their applications to glycerol deoxygenation catalysis. These investigations provide support for each step of a previously proposed glycerol deoxygenation mechanism. Chapter 1 outlines the motivations for this work, specifically the goal of using biomass as a chemical feedstock over more common petroleum-based sources. A discussion of the importance of transforming glycerol to higher value products, such as 1,3-propanediol, is discussed. Chapter 2 describes investigations into the importance of pincer ligand steric factors on the coordination chemistry of the iridium metal center. Full characterization of a five-coordinate iridium-hydride complex is presented; this species was previously proposed to be a catalyst resting state for glycerol deoxygenation. Chapter 3 investigates hydrogen addition to R4(POCOP)Ir(CO) R4 3 t i R4 R4 3 [ POCOP = κ -C6H3-2,6-(OPR2)2 for R = Bu, Pr] and (PCP)Ir(CO) [ (PCP) = κ -C6H3-2,6- t i (CH2PR2)2 for R = Bu, Pr] to give cis- and/or trans-dihydride complexes. -
Interplay Between Gating and Block of Ligand-Gated Ion Channels
brain sciences Review Interplay between Gating and Block of Ligand-Gated Ion Channels Matthew B. Phillips 1,2, Aparna Nigam 1 and Jon W. Johnson 1,2,* 1 Department of Neuroscience, University of Pittsburgh, Pittsburgh, PA 15260, USA; [email protected] (M.B.P.); [email protected] (A.N.) 2 Center for Neuroscience, University of Pittsburgh, Pittsburgh, PA 15260, USA * Correspondence: [email protected]; Tel.: +1-(412)-624-4295 Received: 27 October 2020; Accepted: 26 November 2020; Published: 1 December 2020 Abstract: Drugs that inhibit ion channel function by binding in the channel and preventing current flow, known as channel blockers, can be used as powerful tools for analysis of channel properties. Channel blockers are used to probe both the sophisticated structure and basic biophysical properties of ion channels. Gating, the mechanism that controls the opening and closing of ion channels, can be profoundly influenced by channel blocking drugs. Channel block and gating are reciprocally connected; gating controls access of channel blockers to their binding sites, and channel-blocking drugs can have profound and diverse effects on the rates of gating transitions and on the stability of channel open and closed states. This review synthesizes knowledge of the inherent intertwining of block and gating of excitatory ligand-gated ion channels, with a focus on the utility of channel blockers as analytic probes of ionotropic glutamate receptor channel function. Keywords: ligand-gated ion channel; channel block; channel gating; nicotinic acetylcholine receptor; ionotropic glutamate receptor; AMPA receptor; kainate receptor; NMDA receptor 1. Introduction Neuronal information processing depends on the distribution and properties of the ion channels found in neuronal membranes. -
Chapter 21 D-Metal Organometalloc Chemistry
Chapter 21 d-metal organometalloc chemistry Bonding Ligands Compounds Reactions Chapter 13 Organometallic Chemistry 13-1 Historical Background 13-2 Organic Ligands and Nomenclature 13-3 The 18-Electron Rule 13-4 Ligands in Organometallic Chemistry 13-5 Bonding Between Metal Atoms and Organic π Systems 13-6 Complexes Containing M-C, M=C, and M≡C Bonds 13-7 Spectral Analysis and Characterization of Organometallic Complexes “Inorganic Chemistry” Third Ed. Gary L. Miessler, Donald A. Tarr, 2004, Pearson Prentice Hall http://en.wikipedia.org/wiki/Expedia 13-1 Historical Background Sandwich compounds Cluster compounds 13-1 Historical Background Other examples of organometallic compounds 13-1 Historical Background Organometallic Compound Organometallic chemistry is the study of chemical compounds containing bonds between carbon and a metal. Organometallic chemistry combines aspects of inorganic chemistry and organic chemistry. Organometallic compounds find practical use in stoichiometric and catalytically active compounds. Electron counting is key in understanding organometallic chemistry. The 18-electron rule is helpful in predicting the stabilities of organometallic compounds. Organometallic compounds which have 18 electrons (filled s, p, and d orbitals) are relatively stable. This suggests the compound is isolable, but it can result in the compound being inert. 13-1 Historical Background In attempt to synthesize fulvalene Produced an orange solid (ferrocene) Discovery of ferrocene began the era of modern organometallic chemistry. Staggered -
Searching Coordination Compounds
CAS ONLINEB Available on STN Internationalm The Scientific & Technical Information Network SEARCHING COORDINATION COMPOUNDS December 1986 Chemical Abstracts Service A Division of the American Chemical Society 2540 Olentangy River Road P.O. Box 3012 Columbus, OH 43210 Copyright O 1986 American Chemical Society Quoting or copying of material from this publication for educational purposes is encouraged. providing acknowledgment is made of the source of such material. SEARCHING COORDINATION COMPOUNDS prepared by Adrienne W. Kozlowski Professor of Chemistry Central Connecticut State University while on sabbatical leave as a Visiting Educator, Chemical Abstracts Service Table of Contents Topic PKEFACE ............................s.~........................ 1 CHAPTER 1: INTRODUCTION TO SEARCHING IN CAS ONLINE ............... 1 What is Substructure Searching? ............................... 1 The Basic Commands .............................................. 2 CHAPTEK 2: INTKOOUCTION TO COORDINATION COPPOUNDS ................ 5 Definitions and Terminology ..................................... 5 Ligand Characteristics.......................................... 6 Metal Characteristics .................................... ... 8 CHAPTEK 3: STKUCTUKING AND REGISTKATION POLICIES FOR COORDINATION COMPOUNDS .............................................11 Policies for Structuring Coordination Compounds ................. Ligands .................................................... Ligand Structures........................................... Metal-Ligand -
Complexation
FACULTY OF PHARMACEUTICAL SCIENCES, RAMAUNIVERSITY, KANPUR B.PHARM 3rd SEM PHYSICAL PHARMACEUTICS-I BP302T MR. PEEYUSH Assistant professor Rama university, kanpur Complexation Overview Classification Introduction Metal ion complexes Organic Complexes Inclusion Complexes Methods of Analysis Method of Continuous Variation PH Titration Distribution Method Solubility Method Spectroscopy Learning Objectives 1. Define the three classes of complexes with pharmaceutically relevant examples. 2. Describe chelates, their physically properties, and what differentiates them from organic molecular complexes. 3. Describe the types of forces that hold together organic molecular complexes with examples. 4. Describe the forces in polymer–drug complexes used for drug delivery. 5. Discuss the pharmaceutical applications of cyclodextrins. 6. Describe the methods of analysis of complexes and determine their stoichiometric ratios and stability constants. Classification Introduction Metal ion complexes Organic Complexes Inclusion Complexes INTRODUCTION Complexes are compounds that result from donor–acceptor mechanisms between two or more chemical species. Complexes can be divided broadly into three classes depending the type of the acceptor substance: 1. Metal ion complexes 2. Organic molecular complexes 3. Inclusion complexes Intermolecular forces involved in the formation of complexes: 1. Van der Waals forces. 2. Hydrogen bonds (important in molecular complexes). 3. Coordinate covalence (important in metal complexes). 4. Charge transfer. 5. Hydrophobic interaction. Introduction Types of Complexes Metal Ion Complexes A. Inorganic type B. Chelates C. Olefin type D. Aromatic type II. Organic Molecular Complexes A. Quinhydrone type B. Picric acid type C. Caffeine and other drug complexes D. Polymer type III. Inclusion Compounds A. Channel lattice type B. Layer type C. Clathrates D. Monomolecular type E. -
Osmium(II)–Bis(Dihydrogen) Complexes Containing Caryl,CNHC– Chelate Ligands: Preparation, Bonding Situation, and Acidity
Osmium(II)–bis(Dihydrogen) Complexes Containing Caryl,CNHC– Chelate Ligands: Preparation, Bonding Situation, and Acidity. Tamara Bolaño,† Miguel A. Esteruelas,*,† Israel Fernández,‡ Enrique Oñate,† Adrián Palacios,† Jui-Yi Tsai,√ and Chuanjun Xia√ †Departamento de Química Inorgánica, Instituto de Síntesis Química y Catálisis Homogénea (ISQCH), Centro de Innova- ción en Química Avanzada (ORFEO – CINQA), Universidad de Zaragoza – CSIC, 50009 Zaragoza, Spain ‡Departamento de Química Orgánica, Facultad de Ciencias Químicas, Centro de Innovación en Química Avanzada (ORFEO – CINQA), Universidad Complutense de Madrid, 28040 Madrid, Spain √Universal Display Corporation, 375 Phillips Boulevard, Ewing, New Jersey 08618, United States Supporting Information Placeholder i ABSTRACT: The hexahydride complex OsH6(P Pr3)2 (1) reacts with the BF4-salts of 1-phenyl-3-methyl-1-H-benzimidazolium, 1- phenyl-3-methyl-1-H-5,6-dimethyl-benzimidazolium, and 1-phenyl-3-methyl-1-H-imidazolium to give the respective trihydride- 2 i osmium(IV) derivatives OsH3( -Caryl,CNHC)(P Pr3)2 (2–4). The protonation of these compounds with HBF4·OEt2 produces the re- 2 2 i duction of the metal center and the formation of the bis(dihydrogen)-osmium(II) complexes [Os( -Caryl,CNHC)(η -H2)2(P Pr3)2]BF4 (5–7). DFT calculations using AIM and NBO methods reveal that the Os–NHC bond of the Os-chelate link tolerates a significant π- backdonation from a doubly occupied dπ(Os) atomic orbital to the pz atomic orbital of the carbene carbon atom. The π-accepting capacity of the NHC unit of the Caryl,CNHC-chelate ligand, which is higher than those of the coordinated aryl group and phosphine ligands, enhances the electrophilicity of the metal center activating one of the coordinated hydrogen molecules of 5–7 towards the water heterolysis. -
Selectivity of C-H Activation and Competition Between C-H and C-F Bond Activation at Fluorocarbons
This is a repository copy of Selectivity of C-H activation and competition between C-H and C-F bond activation at fluorocarbons. White Rose Research Online URL for this paper: https://eprints.whiterose.ac.uk/133766/ Version: Accepted Version Article: Eisenstein, Odile, Milani, Jessica and Perutz, Robin N. orcid.org/0000-0001-6286-0282 (2017) Selectivity of C-H activation and competition between C-H and C-F bond activation at fluorocarbons. Chemical Reviews. pp. 8710-8753. ISSN 0009-2665 https://doi.org/10.1021/acs.chemrev.7b00163 Reuse Items deposited in White Rose Research Online are protected by copyright, with all rights reserved unless indicated otherwise. They may be downloaded and/or printed for private study, or other acts as permitted by national copyright laws. The publisher or other rights holders may allow further reproduction and re-use of the full text version. This is indicated by the licence information on the White Rose Research Online record for the item. Takedown If you consider content in White Rose Research Online to be in breach of UK law, please notify us by emailing [email protected] including the URL of the record and the reason for the withdrawal request. [email protected] https://eprints.whiterose.ac.uk/ revised May 2017 Selectivity of C-H activation and competition between C-H and C-F bond activation at fluorocarbons Odile Eisenstein,* ‡ Jessica Milani, and Robin N. Perutz* ‡ Institut Charles Gerhardt, UMR 5253 CNRS Université Montpellier, cc 1501, Place E. Bataillon, 34095 Montpellier, France and Centre for Theoretical and Computational Chemistry (CTCC), Department of Chemistry, University of Oslo, P.O. -
Physical Organic Chemistry
PHYSICAL ORGANIC CHEMISTRY Yu-Tai Tao (陶雨台) Tel: (02)27898580 E-mail: [email protected] Website:http://www.sinica.edu.tw/~ytt Textbook: “Perspective on Structure and Mechanism in Organic Chemistry” by F. A. Corroll, 1998, Brooks/Cole Publishing Company References: 1. “Modern Physical Organic Chemistry” by E. V. Anslyn and D. A. Dougherty, 2005, University Science Books. Grading: One midterm (45%) one final exam (45%) and 4 quizzes (10%) homeworks Chap.1 Review of Concepts in Organic Chemistry § Quantum number and atomic orbitals Atomic orbital wavefunctions are associated with four quantum numbers: principle q. n. (n=1,2,3), azimuthal q.n. (m= 0,1,2,3 or s,p,d,f,..magnetic q. n. (for p, -1, 0, 1; for d, -2, -1, 0, 1, 2. electron spin q. n. =1/2, -1/2. § Molecular dimensions Atomic radius ionic radius, ri:size of electron cloud around an ion. covalent radius, rc:half of the distance between two atoms of same element bond to each other. van der Waal radius, rvdw:the effective size of atomic cloud around a covalently bonded atoms. - Cl Cl2 CH3Cl Bond length measures the distance between nucleus (or the local centers of electron density). Bond angle measures the angle between lines connecting different nucleus. Molecular volume and surface area can be the sum of atomic volume (or group volume) and surface area. Principle of additivity (group increment) Physical basis of additivity law: the forces between atoms in the same molecule or different molecules are very “short range”. Theoretical determination of molecular size:depending on the boundary condition. -
1 5.03, Inorganic Chemistry Prof. Daniel G. Nocera Lecture 11
5.03, Inorganic Chemistry Prof. Daniel G. Nocera Lecture 11 Apr 11: Hydride and Dihydrogen Complexes – – 2 Hydride and dihydrogen are both 2e donors, H (1s ) and H2 (σ1s2) Hydride complexes are synthesized by: (1) Replace halide with hydride using hydride transfer reagents: (2) Heterolytic cleavage of a dihydrogen complex: (3) Oxidative-addition of hydrogen to a metal complex: There are some general features of H2 oxidative-addition: • cis addition – – • 16e complexes or less add H2 (since 2e s are added to the metal complex) • bimolecular rate law (rate = k [IrL2Cl(CO)] [H2]) ‡ • ∆H = 11 kcal/mol (little H–H stretch in the transition state recall that ‡ BDE(H2) = 104 kcal/mol), and a ∆S = 21 eu – – – – • rate decreases along the series X = I > Br > Cl (100 ; 14 : 0.9) • little isotope effect, kH / kD = 1.09 1 For the oxidative-addition reaction, there are two possibilities for the transition state: 1 an H2 intermediate 2 a three-center transition state Both reaction pathways are viable for oxidative-addition (and the reverse reaction, reductive-elimination). For some metal complexes, the “arrested” addition product can be isolated—the dihydrogen complex is obtained as a stable species that can be put in a bottle. Kubas first did this in 1984 with the following reaction: 2 Several observables identify this as an authentic dihydrogen complex vs. a dihydride: • d(H—H) = 0.84 Å (as measured from neutron diffraction). This distance is near the bond distance of free H2, d(H—H) = 0.7414 Å. –1 • a symmetric H2 vibration is observed, ν(H—H) = 2,690 cm , as compared –1 to ν(H—H) = 4,300 cm in free H2. -
Metal Hydride Complexes
Metal Hydride Complexes • Main group metal hydrides play an important role as reducing agents (e.g. LiH, NaH, LiAlH4, LiBH4). • The transition metal M-H bond can undergo insertion with a wide variety of unsaturated compounds to give stable species or reaction intermediates containing M-C bonds • They are not only synthetically useful but are extremely important intermediates in a number of catalytic cycles and also in battery technologies. 1 Transition Metal Hydride Preparation 1. Protonation requires an electron rich basic metal center 1. From Hydride donors main group metal hydrides are typically used as donors. 2 Transition Metal Hydride Preparation 1. Protonation requires an electron rich basic metal center 2. From Hydride donors main group metal hydrides are typically used as donors. 3 3. From H 2 via oxidative addition requires a coordinatively unsaturated metal center 3. From a ligand ( β-elimination) 4 3. From H 2 via oxidative addition requires a coordinatively unsaturated metal center 3. From a ligand ( β-elimination) H O K O Ph3P Cl Ph3P H Ru 2PPh3 Ru KCl Cl PPh3 Ph3P PPh3 H PPh3 4. From a ligand (decarboxylation) CO CO CO2 CO OC CO OC CO OC CO Cr OH Cr Cr OC CO OC COOH OC H CO CO CO Cr(CO)6 CO CO OC CO OC CO Cr Cr CO OC H CO 5 CO CO Transition Metal Hydride Reactivity • Hydride transfer and insertion are closely related • A metal hydride my have acidic or basic character depending on the electronic nature of the metal involved (and of course its ligand set).