The Genetics of Schizophyllum Commune*
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2 the Numbers Behind Mushroom Biodiversity
15 2 The Numbers Behind Mushroom Biodiversity Anabela Martins Polytechnic Institute of Bragança, School of Agriculture (IPB-ESA), Portugal 2.1 Origin and Diversity of Fungi Fungi are difficult to preserve and fossilize and due to the poor preservation of most fungal structures, it has been difficult to interpret the fossil record of fungi. Hyphae, the vegetative bodies of fungi, bear few distinctive morphological characteristicss, and organisms as diverse as cyanobacteria, eukaryotic algal groups, and oomycetes can easily be mistaken for them (Taylor & Taylor 1993). Fossils provide minimum ages for divergences and genetic lineages can be much older than even the oldest fossil representative found. According to Berbee and Taylor (2010), molecular clocks (conversion of molecular changes into geological time) calibrated by fossils are the only available tools to estimate timing of evolutionary events in fossil‐poor groups, such as fungi. The arbuscular mycorrhizal symbiotic fungi from the division Glomeromycota, gen- erally accepted as the phylogenetic sister clade to the Ascomycota and Basidiomycota, have left the most ancient fossils in the Rhynie Chert of Aberdeenshire in the north of Scotland (400 million years old). The Glomeromycota and several other fungi have been found associated with the preserved tissues of early vascular plants (Taylor et al. 2004a). Fossil spores from these shallow marine sediments from the Ordovician that closely resemble Glomeromycota spores and finely branched hyphae arbuscules within plant cells were clearly preserved in cells of stems of a 400 Ma primitive land plant, Aglaophyton, from Rhynie chert 455–460 Ma in age (Redecker et al. 2000; Remy et al. 1994) and from roots from the Triassic (250–199 Ma) (Berbee & Taylor 2010; Stubblefield et al. -
Characterizing the Assemblage of Wood-Decay Fungi in the Forests of Northwest Arkansas
Journal of Fungi Article Characterizing the Assemblage of Wood-Decay Fungi in the Forests of Northwest Arkansas Nawaf Alshammari 1, Fuad Ameen 2,* , Muneera D. F. AlKahtani 3 and Steven Stephenson 4 1 Department of Biological Sciences, University of Hail, Hail 81451, Saudi Arabia; [email protected] 2 Department of Botany & Microbiology, College of Science, King Saud University, Riyadh 11451, Saudi Arabia 3 Biology Department, College of Science, Princess Nourah Bint Abdulrahman University, Riyadh 11564, Saudi Arabia; [email protected] 4 Department of Biological Sciences, University of Arkansas, Fayetteville, AR 72701, USA; [email protected] * Correspondence: [email protected] Abstract: The study reported herein represents an effort to characterize the wood-decay fungi associated with three study areas representative of the forest ecosystems found in northwest Arkansas. In addition to specimens collected in the field, small pieces of coarse woody debris (usually dead branches) were collected from the three study areas, returned to the laboratory, and placed in plastic incubation chambers to which water was added. Fruiting bodies of fungi appearing in these chambers over a period of several months were collected and processed in the same manner as specimens associated with decaying wood in the field. The internal transcribed spacer (ITS) ribosomal DNA region was sequenced, and these sequences were blasted against the NCBI database. A total of 320 different fungal taxa were recorded, the majority of which could be identified to species. Two hundred thirteen taxa were recorded as field collections, and 68 taxa were recorded from the incubation chambers. Thirty-nine sequences could be recorded only as unidentified taxa. -
New Record of Woldmaria Filicina (Cyphellaceae, Basidiomycota) in Russia
Mycosphere 4 (4): 848–854 (2013) ISSN 2077 7019 www.mycosphere.org Article Mycosphere Copyright © 2013 Online Edition Doi 10.5943/mycosphere/4/4/18 New Record of Woldmaria filicina (Cyphellaceae, Basidiomycota) in Russia Vlasenko VA and Vlasenko AV Central Siberian Botanical Garden, Siberian Branch of the Russian Academy of Sciences, Zolotodolinskaya, 101, Novosibirsk 630090, Russia Email: [email protected], [email protected] Vlasenko VA, Vlasenko AV 2013 – New Record of Woldmaria filicina (Cyphellaceae, Basidiomycota) in Russia. Mycosphere 4(4), 848–854, Doi 10.5943/mycosphere/4/4/18 Abstract This paper provides information on the new record of Woldmaria filicina in Russia. This rare and interesting member of the cyphellaceous fungi was found in the Novosibirsk Region of Western Siberia in the forest-steppe zone, on dead stems of the previous year of the fern Matteuccia struthiopteris. A description of the species is given along with images of fruiting bodies of the fungus and its microstructures, information on the ecology and general distribution and data on the literature and internet sources. Key words – cyphellaceous fungi – forest-steppe – new data – microhabitats – Woldmaria filicina Introduction This paper is devoted to the description of an interesting member of the cyphellaceous fungi – Woldmaria filicina—found for the first time in the vast area of Siberia. This species was previously known from Europe, including the European part of Russia and the Urals but was found the first time in the forest-steppe zone of Western Siberia. Despite the large scale of the territory and well-studied biodiversity of aphyllophoroid fungi (808 species are known from Western Siberia) this species has not previously been recorded here, and information is provided on the specific substrate and the habitat of the fungus at this new locality. -
Comparison of Two Schizophyllum Commune Strains in Production of Acetylcholinesterase Inhibitors and Antioxidants from Submerged Cultivation
Journal of Fungi Article Comparison of Two Schizophyllum commune Strains in Production of Acetylcholinesterase Inhibitors and Antioxidants from Submerged Cultivation Jovana Miškovi´c 1,†, Maja Karaman 1,*,†, Milena Rašeta 2, Nenad Krsmanovi´c 1, Sanja Berežni 2, Dragica Jakovljevi´c 3, Federica Piattoni 4, Alessandra Zambonelli 5 , Maria Letizia Gargano 6 and Giuseppe Venturella 7 1 Department of Biology and Ecology, Faculty of Sciences, University of Novi Sad, TrgDositejaObradovi´ca2, 21000 Novi Sad, Serbia; [email protected] (J.M.); [email protected] (N.K.) 2 Department of Chemistry, Biochemistry and Environmental Protection, Faculty of Sciences, University of Novi Sad, Trg Dositeja Obradovi´ca3, 21000 Novi Sad, Serbia; [email protected] (M.R.); [email protected] (S.B.) 3 Institute of Chemistry, Technology and Metallurgy, University of Belgrade, Njegoševa 12, 11000 Belgrade, Serbia; [email protected] 4 Laboratory of Genetics & Genomics of Marine Resources and Environment (GenoDream), Department Biological, Geological & Environmental Sciences (BiGeA), University of Bologna, Via S. Alberto 163, 48123 Ravenna, Italy; [email protected] 5 Dipartimento di Scienze e Tecnologie Agroalimentari, University of Bologna, Via Fanin 46, 40127 Bologna, Italy; [email protected] 6 Department of Agricultural and Environmental Science, University of Bari “Aldo Moro”, Via Amendola 165/A, I-70126 Bari, Italy; [email protected] Citation: Miškovi´c,J.; Karaman, M.; 7 Department of Agricultural, Food and Forest Sciences, University of Palermo, Via delle Scienze, Bldg. 4, Rašeta, M.; Krsmanovi´c,N.; 90128 Palermo, Italy; [email protected] Berežni, S.; Jakovljevi´c,D.; Piattoni, F.; * Correspondence: [email protected] Zambonelli, A.; Gargano, M.L.; † These two authors equally contributed to the performed study. -
Evolution of Novel Wood Decay Mechanisms in Agaricales Revealed by the Genome Sequences of Fistulina Hepatica and Cylindrobasidium Torrendii
YFGBI 2781 No. of Pages 15, Model 5G 17 February 2015 Fungal Genetics and Biology xxx (2015) xxx–xxx 1 Contents lists available at ScienceDirect Fungal Genetics and Biology journal homepage: www.elsevier.com/locate/yfgbi 2 Regular Articles 7 4 Evolution of novel wood decay mechanisms in Agaricales 8 5 revealed by the genome sequences of Fistulina hepatica and 6 Cylindrobasidium torrendii a,⇑ b c a d 9 Dimitrios Floudas , Benjamin W. Held , Robert Riley , Laszlo G. Nagy , Gage Koehler , d d c c c c 10 Anthony S. Ransdell , Hina Younus , Julianna Chow , Jennifer Chiniquy , Anna Lipzen , Andrew Tritt , c c c c e b 11 Hui Sun , Sajeet Haridas , Kurt LaButti , Robin A. Ohm , Ursula Kües , Robert A. Blanchette , c d a 12 Igor V. Grigoriev , Robert E. Minto , David S. Hibbett 13 a Department of Biology, Clark University, 950 Main St, Worcester 01610, MA, United States 14 b Department of Plant Pathology, University of Minnesota, 1991 Upper Buford Circle, St. Paul, MN 55108-6030, United States 15 c US Department of Energy (DOE) Joint Genome Institute, United States 16 d Department of Chemistry and Chemical Biology, Indiana University-Purdue University Indianapolis, LD326, 402 N Blackford St, Indianapolis, IN 46202, United States 17 e Büsgen Department of Molecular Wood Biotechnology and Technical Mycology, University of Göttingen, Büsgenweg 2, 37077 Göttingen, Germany 18 19 article info abstract 3521 22 Article history: Wood decay mechanisms in Agaricomycotina have been traditionally separated in two categories termed 36 23 Received 19 September 2014 white and brown rot. Recently the accuracy of such a dichotomy has been questioned. -
Some Critically Endangered Species from Turkey
Fungal Conservation issue 4: February 2014 Fungal Conservation Note from the Editor This issue of Fungal Conservation is being put together in the glow of achievement associated with the Third International Congress on Fungal Conservation, held in Muğla, Turkey in November 2013. The meeting brought together people committed to fungal conservation from all corners of the Earth, providing information, stimulation, encouragement and general happiness that our work is starting to bear fruit. Especial thanks to our hosts at the University of Muğla who did so much behind the scenes to make the conference a success. This issue of Fungal Conservation includes an account of the meeting, and several papers based on presentations therein. A major development in the world of fungal conservation happened late last year with the launch of a new website (http://iucn.ekoo.se/en/iucn/welcome) for the Global Fungal Red Data List Initiative. This is supported by the Mohamed bin Zayed Species Conservation Fund, which also made a most generous donation to support participants from less-developed nations at our conference. The website provides a user-friendly interface to carry out IUCN-compliant conservation assessments, and should be a tool that all of us use. There is more information further on in this issue of Fungal Conservation. Deadlines are looming for the 10th International Mycological Congress in Thailand in August 2014 (see http://imc10.com/2014/home.html). Conservation issues will be featured in several of the symposia, with one of particular relevance entitled "Conservation of fungi: essential components of the global ecosystem”. There will be room for a limited number of contributed papers and posters will be very welcome also: the deadline for submitting abstracts is 31 March. -
Split Gill – Schizophyllum Commune Else Vellinga, Ph.D
The Mycological Society of San Francisco • May 2013, vol. 64:09 MycoDigest: May 21 General Meeting Speaker Split Gill – Schizophyllum commune Else Vellinga, Ph.D. hroughout the winter white and hairy split gill fruitbodies (Schizophyllum Tcommune) lined my route through Berkeley – these fungi were holding out in open places on stumps and dead branches, despite the record dry weather. Dur- ing rain showers they opened up and were soft, pliable and more colorful – only to turn back to their hard and white stage when the sun came out again (fig.s 1 and 2). They deserve a second look, especially their gills, because these are unique among mushrooms! The gills are split on the tips and the edges curl outwards; that is obviously where the com- mon name comes from. Buller, a mycologist who was a keen observer of everything that Christian Schwarz has to do with spore production “Tales from the Cryptogams: Sex, and dispersal, found out that even Death and Alternative Lifestyles from after two years of drought, a split the Kingdom Fungi” gill fruitbody would spring back to —From morphology to reproductive strategies, life and start forming spores again from nutritional modes to interdigitations with when wetted. Sixteen years, how- human culture, this will be a multidisciplinary exploration of fungal strangeness.— ever, was too long a period to get going again. He also showed clear- Photo: John Lennie hristian Schwarz has been ly (see fig. 3) that in drought, the Cseriously interested in fungi since lamellae roll up and cover the un- Fig. 1. Upper side of fresh, wet fruitbody he was in high school in San Diego. -
New Record of Schizophyllum (Schizophyllaceae) from Mexico and the Confirmation of Its Edibility in the Humid Tropics
Phytotaxa 413 (2): 137–148 ISSN 1179-3155 (print edition) https://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2019 Magnolia Press Article ISSN 1179-3163 (online edition) https://doi.org/10.11646/phytotaxa.413.2.3 New record of Schizophyllum (Schizophyllaceae) from Mexico and the confirmation of its edibility in the humid tropics SANTA D. CARREÑO-RUIZ1, ABISAG A. ÁVALOS LÁZARO1, SILVIA CAPPELLO GARCÍA1*, RIGOBERTO GAITÁN HERNÁNDEZ2, JIE CHEN2, GRISELDA K. GUILLÉN NAVARRO3, LUZ V. GARCÍA FAJARDO3, NELLY DEL C. JIMÉNEZ PÉREZ1, MAGDIEL TORRES DE LA CRUZ1, JOAQUÍN CIFUENTES BLANCO4 & RENATO E. CAPPELLO5 1Universidad Juárez Autónoma de Tabasco. Villahermosa-Cárdenas road km 0.5, deviaton to Bosques de Saloya, Villahermosa, Tabasco, Mexico, C.P. 86150 2Instituto de Ecología, A. C. Old road to Coatepec 351, El Haya, Xalapa, Veracruz, Mexico, C.P. 91070 3El Colegio de la Frontera Sur. Old Airport Road Km. 2.5, Centro, Tapachula de Córdova y Ordoñez, Chiapas, Mexico C.P. 30700 4Facultad de Ciencias, Universidad Nacional Autónoma de Mexico. University City, Coyoacán, CDMX, Mexico, C.P. 04510. 5Departament of Pediatrics. University of Virginia. 409 Lane Rd, Charlottesville, VA 22903, Virginia, United States of America. *Corresponding autor: Silvia Cappello Garcí[email protected] Abstract The genus Schizophyllum is easily recognized within the order Agaricales. However, at the species level, taxonomic information for identification purposes is limited. The objective of the present study was to confirm the identity of the Schizophyllum species present in Tabasco, Mexico, by means of a detailed taxonomic revision of the macro- and micromorphological characters in more than 90 specimens, as well as phylogenetic analyses inferred from ITS sequence data. -
Major Clades of Agaricales: a Multilocus Phylogenetic Overview
Mycologia, 98(6), 2006, pp. 982–995. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 Major clades of Agaricales: a multilocus phylogenetic overview P. Brandon Matheny1 Duur K. Aanen Judd M. Curtis Laboratory of Genetics, Arboretumlaan 4, 6703 BD, Biology Department, Clark University, 950 Main Street, Wageningen, The Netherlands Worcester, Massachusetts, 01610 Matthew DeNitis Vale´rie Hofstetter 127 Harrington Way, Worcester, Massachusetts 01604 Department of Biology, Box 90338, Duke University, Durham, North Carolina 27708 Graciela M. Daniele Instituto Multidisciplinario de Biologı´a Vegetal, M. Catherine Aime CONICET-Universidad Nacional de Co´rdoba, Casilla USDA-ARS, Systematic Botany and Mycology de Correo 495, 5000 Co´rdoba, Argentina Laboratory, Room 304, Building 011A, 10300 Baltimore Avenue, Beltsville, Maryland 20705-2350 Dennis E. Desjardin Department of Biology, San Francisco State University, Jean-Marc Moncalvo San Francisco, California 94132 Centre for Biodiversity and Conservation Biology, Royal Ontario Museum and Department of Botany, University Bradley R. Kropp of Toronto, Toronto, Ontario, M5S 2C6 Canada Department of Biology, Utah State University, Logan, Utah 84322 Zai-Wei Ge Zhu-Liang Yang Lorelei L. Norvell Kunming Institute of Botany, Chinese Academy of Pacific Northwest Mycology Service, 6720 NW Skyline Sciences, Kunming 650204, P.R. China Boulevard, Portland, Oregon 97229-1309 Jason C. Slot Andrew Parker Biology Department, Clark University, 950 Main Street, 127 Raven Way, Metaline Falls, Washington 99153 Worcester, Massachusetts, 01609 9720 Joseph F. Ammirati Else C. Vellinga University of Washington, Biology Department, Box Department of Plant and Microbial Biology, 111 355325, Seattle, Washington 98195 Koshland Hall, University of California, Berkeley, California 94720-3102 Timothy J. -
Taxonomy and Phylogeny of the Basidiomycetous Hyphomycete Genus Hormomyces
VOLUME 7 JUNE 2021 Fungal Systematics and Evolution PAGES 177–196 doi.org/10.3114/fuse.2021.07.09 Taxonomy and phylogeny of the basidiomycetous hyphomycete genus Hormomyces J. Mack*, R.A. Assabgui, K.A. Seifert# Biodiversity (Mycology and Microbiology), Agriculture and Agri-Food Canada, 960 Carling Avenue, Ottawa, Ontario K1A 0C6, Canada. #Current address: Department of Biology, Carleton University, 1125 Colonel By Drive, Ottawa, Ontario K1S 5B6, Canada. *Corresponding author: [email protected] Abstract: The taxonomy of the genus Hormomyces, typified by Hormomyces aurantiacus, which based on circumstantial Key words: evidence was long assumed to be the hyphomycetous asexual morph of Tremella mesenterica (Tremellales, Tremellomycetes) Dacrymyces or occasionally Dacrymyces (Dacrymycetales, Dacrymycetes), is revised. Phylogenies based on the three nuc rDNA markers Oosporidium [internal transcribed spacers (ITS), 28S large ribosomal subunit nrDNA (28S) and 18S small ribosomal subunit nrDNA (18S)], Tremella based on cultures from Canada and the United States, suggest that the genus is synonymous with Tulasnella (Cantharellales, Tulasnella Agaricomycetes) rather than Tremella or Dacrymyces. Morphological studies of 38 fungarium specimens of Hormomyces, 1 new taxon including the type specimens of H. callorioides, H. fragiformis, H. paridiphilus and H. peniophorae and examination of the protologues of H. abieticola, H. aurantiacus and H. pezizoideus suggest that H. callorioides and H. fragiformis are conspecific with H. aurantiacus while the remaining species are unlikely to be related to Tulasnella. The conidial chains produced by H. aurantiacus are similar to monilioid cells of asexual morphs of Tulasnella species formerly referred to the genus Epulorhiza. The new combination Tulasnella aurantiaca is proposed and the species is redescribed, illustrated and compared with similar fungi. -
Major Clades of Agaricales: a Multilocus Phylogenetic Overview
Mycologia, 98(6), 2006, pp. 982–995. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 Major clades of Agaricales: a multilocus phylogenetic overview P. Brandon Matheny1 Duur K. Aanen Judd M. Curtis Laboratory of Genetics, Arboretumlaan 4, 6703 BD, Biology Department, Clark University, 950 Main Street, Wageningen, The Netherlands Worcester, Massachusetts, 01610 Matthew DeNitis Vale´rie Hofstetter 127 Harrington Way, Worcester, Massachusetts 01604 Department of Biology, Box 90338, Duke University, Durham, North Carolina 27708 Graciela M. Daniele Instituto Multidisciplinario de Biologı´a Vegetal, M. Catherine Aime CONICET-Universidad Nacional de Co´rdoba, Casilla USDA-ARS, Systematic Botany and Mycology de Correo 495, 5000 Co´rdoba, Argentina Laboratory, Room 304, Building 011A, 10300 Baltimore Avenue, Beltsville, Maryland 20705-2350 Dennis E. Desjardin Department of Biology, San Francisco State University, Jean-Marc Moncalvo San Francisco, California 94132 Centre for Biodiversity and Conservation Biology, Royal Ontario Museum and Department of Botany, University Bradley R. Kropp of Toronto, Toronto, Ontario, M5S 2C6 Canada Department of Biology, Utah State University, Logan, Utah 84322 Zai-Wei Ge Zhu-Liang Yang Lorelei L. Norvell Kunming Institute of Botany, Chinese Academy of Pacific Northwest Mycology Service, 6720 NW Skyline Sciences, Kunming 650204, P.R. China Boulevard, Portland, Oregon 97229-1309 Jason C. Slot Andrew Parker Biology Department, Clark University, 950 Main Street, 127 Raven Way, Metaline Falls, Washington 99153- Worcester, Massachusetts, 01609 9720 Joseph F. Ammirati Else C. Vellinga University of Washington, Biology Department, Box Department of Plant and Microbial Biology, 111 355325, Seattle, Washington 98195 Koshland Hall, University of California, Berkeley, California 94720-3102 Timothy J. -
The Effect of Prescribed Burning on Wood-Decay Fungi in the Forests of Northwest Arkansas" (2019)
University of Arkansas, Fayetteville ScholarWorks@UARK Theses and Dissertations 8-2019 The ffecE t of Prescribed Burning on Wood-Decay Fungi in the Forests of Northwest Arkansas Nawaf Ibrahim Alshammari University of Arkansas, Fayetteville Follow this and additional works at: https://scholarworks.uark.edu/etd Part of the Forest Biology Commons, Forest Management Commons, Fungi Commons, Plant Biology Commons, and the Plant Pathology Commons Recommended Citation Alshammari, Nawaf Ibrahim, "The Effect of Prescribed Burning on Wood-Decay Fungi in the Forests of Northwest Arkansas" (2019). Theses and Dissertations. 3352. https://scholarworks.uark.edu/etd/3352 This Dissertation is brought to you for free and open access by ScholarWorks@UARK. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of ScholarWorks@UARK. For more information, please contact [email protected]. The Effect of Prescribed Burning on Wood-Decay Fungi in the Forests of Northwest Arkansas. A dissertation submitted in partial fulfillment of the requirements for degree of Doctor of Philosophy in Biology by Nawaf Alshammari King Saud University Bachelor of Science in the field of Botany, 2000 King Saud University Master of Environmental Science, 2012 August 2019 University of Arkansas This dissertation is approved for recommendation to the Graduate Council. _______________________________ Steven Stephenson, PhD Dissertation Director ________________________________ ______________________________ Fred Spiegel, PhD Ravi Barabote, PhD Committee Member Committee Member ________________________________ Young Min Kwon, PhD Committee Member Abstract Prescribed burning is defined as the process of the planned application of fire to a predetermined area under specific environmental conditions in order to achieve a desired outcome such as land management.