Development and Collapse of a Gymnodinium Mikimotoi Red Tide in the Seto Inland Sea
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Molecular Data and the Evolutionary History of Dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Un
Molecular data and the evolutionary history of dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Universitat Heidelberg, 1993 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES Department of Botany We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA November 2003 © Juan Fernando Saldarriaga Echavarria, 2003 ABSTRACT New sequences of ribosomal and protein genes were combined with available morphological and paleontological data to produce a phylogenetic framework for dinoflagellates. The evolutionary history of some of the major morphological features of the group was then investigated in the light of that framework. Phylogenetic trees of dinoflagellates based on the small subunit ribosomal RNA gene (SSU) are generally poorly resolved but include many well- supported clades, and while combined analyses of SSU and LSU (large subunit ribosomal RNA) improve the support for several nodes, they are still generally unsatisfactory. Protein-gene based trees lack the degree of species representation necessary for meaningful in-group phylogenetic analyses, but do provide important insights to the phylogenetic position of dinoflagellates as a whole and on the identity of their close relatives. Molecular data agree with paleontology in suggesting an early evolutionary radiation of the group, but whereas paleontological data include only taxa with fossilizable cysts, the new data examined here establish that this radiation event included all dinokaryotic lineages, including athecate forms. Plastids were lost and replaced many times in dinoflagellates, a situation entirely unique for this group. Histones could well have been lost earlier in the lineage than previously assumed. -
The Integrated Coastal Zone Management Based on Ecosystem Services
THE INTEGRATED COASTAL ZONE MANAGEMENT BASED ON ECOSYSTEM SERVICES NAKAGAMI Kenichi, Ritsumeikan University, Japan OBATA Norio, Ritsumeikan University, Japan TAKAO Katsuk, Ritsumeikan University, Japan UEHARA Takuro, Ritsumeikan University, Japan SAKURAI Ryo, Ritsumeikan University, Japan OTA Takahiro, Nagasaki University, Japan YOSHIOKA Taisuke, Ritsumeikan University, Japan NIU Jia, Ritsumeikan University, Japan CHEN Xiaochen, Ritsumeikan University, Japan ,MINEO Keito, Kyoto University, Japan [email protected] The Japanese term “Satoumi” inspires us to pursue sound coastal zone governance by taking sustainable development into consideration with “Establishment of Sato-umi in the coastal sea”. The popular ICZM (Integrated Coastal Zone Management) shows us the potential approach toward a coastal area with harmonious interaction between human-being and natural environment. Seto Inland Sea which has undergone serious environmental degradation and anthropogenic changes. In order to recover and sustain its unparalleled values, rebuilding a sound environmental policy system from top to bottom is highly required. The ecosystem services and their monetary values are also estimated buy CVM necessary for sustainability assessment, due to their powerful roles in representing human-coastal zone relationship and supporting sustainability of a “Satoumi” system. The sustainability assessment framework for Seto Inland Sea, which consists of Inclusive Wealth, “Satoumi”, and ecosystem service approach was developed. Key words: Satoumi, ICZM, Seto Inland Sea, Ecosystem service, CVM, Sustainability Ⅰ.INTRODUCTION Japanese term “Satoumi” refers to coastal zone that has sound bio-productivity and biodiversity through human activities, which is composed of five elements. Three factors support the conservation and revitalization of coastal zone, i.e., material circulation, ecosystem and communication. Another two facilitate the realization of “Satoumi”, i.e., field of activity and executors of activity. -
Growth and Grazing Rates of the Herbivorous Dinoflagellate Gymnodinium Sp
MARINE ECOLOGY PROGRESS SERIES Published December 16 Mar. Ecol. Prog. Ser. Growth and grazing rates of the herbivorous dinoflagellate Gymnodinium sp. from the open subarctic Pacific Ocean Suzanne L. Strom' School of Oceanography WB-10, University of Washington. Seattle. Washington 98195, USA ABSTRACT: Growth, grazing and cell volume of the small heterotroph~cdinoflagellate Gyrnnodin~um sp. Isolated from the open subarctic Pacific Ocean were measured as a funct~onof food concentration using 2 phytoplankton food species. Growth and lngestlon rates increased asymptotically with Increas- ing phytoplankon food levels, as did grazer cell volume; rates at representative oceanic food levels were high but below maxima. Clearance rates decreased with lncreaslng food levels when Isochrysis galbana was the food source; they increased ~vithlncreaslng food levels when Synechococcus sp. was the food source. There was apparently a grazlng threshold for Ingestion of Synechococcus: below an initial Synechococcus concentration of 20 pgC 1.' ingestion rates on this alga were very low, while above this initial concentratlon Synechococcus was grazed preferent~ally Gross growth efficiency varied between 0.03 and 0.53 (mean 0.21) and was highest at low food concentrations. Results support the hypothesis that heterotrophic d~noflagellatesmay contribute to controlling population increases of small, rap~dly-grow~ngphytoplankton specles even at low oceanic phytoplankton concentrations. INTRODUCTION as Gymnodinium and Gyrodinium is difficult or impos- sible using older preservation and microscopy tech- Heterotrophic dinoflagellates can be a significant niques; experimental emphasis has been on more component of the microzooplankton in marine waters. easily recognizable and collectable microzooplankton In the oceanic realm, Lessard (1984) and Shapiro et al. -
The Planktonic Protist Interactome: Where Do We Stand After a Century of Research?
bioRxiv preprint doi: https://doi.org/10.1101/587352; this version posted May 2, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Bjorbækmo et al., 23.03.2019 – preprint copy - BioRxiv The planktonic protist interactome: where do we stand after a century of research? Marit F. Markussen Bjorbækmo1*, Andreas Evenstad1* and Line Lieblein Røsæg1*, Anders K. Krabberød1**, and Ramiro Logares2,1** 1 University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N- 0316 Oslo, Norway 2 Institut de Ciències del Mar (CSIC), Passeig Marítim de la Barceloneta, 37-49, ES-08003, Barcelona, Catalonia, Spain * The three authors contributed equally ** Corresponding authors: Ramiro Logares: Institute of Marine Sciences (ICM-CSIC), Passeig Marítim de la Barceloneta 37-49, 08003, Barcelona, Catalonia, Spain. Phone: 34-93-2309500; Fax: 34-93-2309555. [email protected] Anders K. Krabberød: University of Oslo, Department of Biosciences, Section for Genetics and Evolutionary Biology (Evogene), Blindernv. 31, N-0316 Oslo, Norway. Phone +47 22845986, Fax: +47 22854726. [email protected] Abstract Microbial interactions are crucial for Earth ecosystem function, yet our knowledge about them is limited and has so far mainly existed as scattered records. Here, we have surveyed the literature involving planktonic protist interactions and gathered the information in a manually curated Protist Interaction DAtabase (PIDA). In total, we have registered ~2,500 ecological interactions from ~500 publications, spanning the last 150 years. -
Grazing Impacts of the Heterotrophic Dinoflagellate Polykrikos Kofoidii on a Bloom of Gymnodinium Catenatum
AQUATIC MICROBIAL ECOLOGY Published April 30 Aquat Microb Ecol NOTE Grazing impacts of the heterotrophic dinoflagellate Polykrikos kofoidii on a bloom of Gymnodinium catenatum Yukihiko Matsuyama'f*,Masahide Miyamoto2, Yuichi ~otani' 'National Research Institute of Fisheries and Environment of Inland Sea, Maruishi, Ohno, Saeki, Hiroshima 739-0452, Japan 2KumamotoAriake Fisheries Direction Office, Iwasaki, Tamana, Kumamoto 865-0016, Japan ABSTRACT: In 1998, a red tide of the paralytic shellfish an assessment of the natural population of G. catena- poisoning (PSP)-producing dinoflagellate Gymnodinium cate- turn coupled with a laboratory incubation experiment naturn Graham occurred in Yatsushiro Sea, western Japan. to evaluate the bloom fate. We present data showing The dramatic decline of dominant G. catenatum cells oc- curred during the field and laboratory assessments, accompa- considerable predation by the pseudocolonial hetero- nied with growth of the heterotrophic dinoflagellate Poly- trophic dinoflagellate Polykrikos kofoidii Chatton on knkos kofoidii Chatton. Microscopic observations on both the dominant G. catenatum population, and discuss field and laboratory cultured bloom water revealed that the ecological importance of the genus Polykrikos and >50% of P. kofoidii predated on the natural population of G. catenaturn, and 1 to 8 G. catenatum cells were found in its grazing impact on harmful algal blooms. food vacuoles of P. kofoidii pseudocolonies. Our results sug- Materials and methods. Filed population surveys: gest that predation by P. kofoidii contributes to the cessation The Gymnodinium catenatum bloom occurred from 19 of a G. catenatum bloom. January to 5 February in Miyano-Gawachi Bay, west- ern Yatsushiro Sea, Kyushu Island (Fig. 1). Five cruises KEY WORDS: PSP - Gymnodimurn catenatum . -
The Florida Red Tide Dinoflagellate Karenia Brevis
G Model HARALG-488; No of Pages 11 Harmful Algae xxx (2009) xxx–xxx Contents lists available at ScienceDirect Harmful Algae journal homepage: www.elsevier.com/locate/hal Review The Florida red tide dinoflagellate Karenia brevis: New insights into cellular and molecular processes underlying bloom dynamics Frances M. Van Dolah a,*, Kristy B. Lidie a, Emily A. Monroe a, Debashish Bhattacharya b, Lisa Campbell c, Gregory J. Doucette a, Daniel Kamykowski d a Marine Biotoxins Program, NOAA Center for Coastal Environmental Health and Biomolecular Resarch, Charleston, SC, United States b Department of Biological Sciences and Roy J. Carver Center for Comparative Genomics, University of Iowa, Iowa City, IA, United States c Department of Oceanography, Texas A&M University, College Station, TX, United States d Department of Marine, Earth and Atmospheric Sciences, North Carolina State University, Raleigh, NC, United States ARTICLE INFO ABSTRACT Article history: The dinoflagellate Karenia brevis is responsible for nearly annual red tides in the Gulf of Mexico that Available online xxx cause extensive marine mortalities and human illness due to the production of brevetoxins. Although the mechanisms regulating its bloom dynamics and toxicity have received considerable attention, Keywords: investigation into these processes at the cellular and molecular level has only begun in earnest during Bacterial–algal interactions the past decade. This review provides an overview of the recent advances in our understanding of the Cell cycle cellular and molecular biology on K. brevis. Several molecular resources developed for K. brevis, including Dinoflagellate cDNA and genomic DNA libraries, DNA microarrays, metagenomic libraries, and probes for population Florida red tide genetics, have revolutionized our ability to investigate fundamental questions about K. -
Genetic Relationships Among Lancelet Populations in Seto Inland Sea Inferred from Mitochondrial DNA Sequences
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Hiroshima University Institutional Repository 広島大学総合博物館研究報告 Bulletin of the Hiroshima University Museum 5: 1︲6, December 25, 2013 論文 Article Genetic Relationships among Lancelet Populations in Seto Inland Sea Inferred from Mitochondrial DNA Sequences Koichiro KAWAI1, Hiroyuki KATO, Hidetoshi SAITO and Hiromichi IMABAYASHI Abstract: Genetic relationships were examined among a total of 74 lancelets, Branchiostoma japonicum (Willey 1897), collected at 16 stations in the Seto Inland Sea on the basis of the sequence of the COI region of mitochondrial DNA. Genetic divergence was usually high at the stations near straits. Besides, there were no significant relationships between geographical and genetic distances of individual lancelets. As many as 62 haplotypes were recognized, among which only three comprised multiple individuals from distant stations, and the remaining ones comprised a single individual. In a dendrogram, some clusters were made up of individuals from nearby stations whereas other ones were made up of those from more or less distant stations. These results suggest that the high genetic heterogeneity of the lancelet population in the Seto Inland Sea is maintained by continuous genetic exchanges via a large-scale dispersion at long planktonic stages driven by tidal and constant currents in this region. Keywords: Branchiostoma, genetic relationship, lancelet, population Ⅰ.Introduction phytoplankton content. However, the origins and Lancelets is a member of the subphylum formation processes of the population is still unknown in Cephalocordata of the phylum Chordata. They live in the Seto Inland Sea. relatively coarse sand at the sea bed and spend most of In this study, we examined the genetic diversity and their time in the shallow burrows, filter-feeding small relationships among the same cohort of the lancelets particles, phytoplankton and organic matters (Stokes & collected at different sites, covering almost over the Seto Holland 1998). -
Potentially Toxic Dinoflagellates in Mediterranean Waters (Sicily) and Related Hydrobiological Conditions
AQUATIC MICROBIAL ECOLOGY I Vol. 9: 63-68, 1995 Published April 28 Aquat microb Ecol I I Potentially toxic dinoflagellates in Mediterranean waters (Sicily) and related hydrobiological conditions 'Istituto Sperimentale Talassografico, CNR - Sp. San Raineri, 1-98122 Messina, Italy 'CEOM - Centro Oceanologico Mediterraneo, Palermo, Italy ABSTRACT: The seasonal occurrence of 3 potentially toxic dinoflagellates in different coastal environ- ments of Sicily (Mediterranean Sea) and the associated hydrobiological conditions are reported. Dino- physis sacculus and Alexandrium sp. occurred, in 1993, in shallow inland waters (a brackish lagoon of the Tyrrhenian Sea), characterized by thermo-haline homogeneity. The densities of Dinophysis were maximal in Apnl, when the waters were depleted in nutrients, the N:P ratio was 10:1 and the algal pop- ulation, including synechoccoid cyanobacteria, bloomed. Afterwards, the cell concentrations decreased and in summer there was a total replacement of Dinophysis with Alexandrium. In late summer 1993, Gymnodinium catenatum was also recorded in offshore waters of the Malta Channel, during coastal upwelling associated with thermal stratification of the waters and the cells dispersed shorewards. DSP toxicity of blue mussels was detected in April, at a low level only, in the area affected by D. sacculus. No data is, however, available to date on PSP production by Alexandrium and G. catenatum, which are new records for these areas. KEY WORDS: Dinoflagellates . Hydrobiological factors . Mediterranean Sea . Shellfish contamination INTRODUCTION tised, as well as in other areas of the Tyrrhenian coast- line, where artificial reefs and pilot plants for shellfish In recent years, various species of both naked and farming are located (Giacobbe et al. -
Aquatic Microbial Ecology 80:193
This authors' personal copy may not be publicly or systematically copied or distributed, or posted on the Open Web, except with written permission of the copyright holder(s). It may be distributed to interested individuals on request. Vol. 80: 193–207, 2017 AQUATIC MICROBIAL ECOLOGY Published online October 5 https://doi.org/10.3354/ame01849 Aquat Microb Ecol Grazing of the heterotrophic dinoflagellate Noctiluca scintillans on dinoflagellate and raphidophyte prey Beth A. Stauffer1,*, Alyssa G. Gellene2, Diane Rico3, Christine Sur4, David A. Caron2 1Department of Biology, University of Louisiana at Lafayette, Lafayette, LA 70403, USA 2Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089, USA 3School of Oceanography, University of Washington, Seattle, WA 98105, USA 4Graduate Group in Ecology, University of California, Davis, Davis, CA 95616, USA ABSTRACT: Noctiluca scintillans is a bloom-forming heterotrophic dinoflagellate that can ingest (and grow on) a number of phytoplankton prey, including several potentially toxic phytoplankton species. The current study documented (1) a range of N. scintillans growth rates (μ = −0.09 to 0.83 d−1) on several species of harmful dinoflagellates and raphidophytes, including Heterosigma akashiwo and Akashiwo sanguinea, and (2) the first published growth rates on Lingulodinium polyedrum, Chattonella marina, and Alexandrium catenella. N. scintillans attained maximum growth rates (μ = 0.83 d−1) on the raphidophyte H. akashiwo and negative growth rates (i.e. signif- icant mortality) on the dinoflagellates A. catenella (μ = −0.03 d−1) and A. sanguinea (μ = −0.08 d−1) and the raphidophyte C. marina (μ = −0.09 d−1). Toxin production by A. -
And Intra-Species Replacements in Freshwater Fishes in Japan
G C A T T A C G G C A T genes Article Waves Out of the Korean Peninsula and Inter- and Intra-Species Replacements in Freshwater Fishes in Japan Shoji Taniguchi 1 , Johanna Bertl 2, Andreas Futschik 3 , Hirohisa Kishino 1 and Toshio Okazaki 1,* 1 Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1, Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan; [email protected] (S.T.); [email protected] (H.K.) 2 Department of Mathematics, Aarhus University, Ny Munkegade, 118, bldg. 1530, 8000 Aarhus C, Denmark; [email protected] 3 Department of Applied Statistics, Johannes Kepler University Linz, Altenberger Str. 69, 4040 Linz, Austria; [email protected] * Correspondence: [email protected] Abstract: The Japanese archipelago is located at the periphery of the continent of Asia. Rivers in the Japanese archipelago, separated from the continent of Asia by about 17 Ma, have experienced an intermittent exchange of freshwater fish taxa through a narrow land bridge generated by lowered sea level. As the Korean Peninsula and Japanese archipelago were not covered by an ice sheet during glacial periods, phylogeographical analyses in this region can trace the history of biota that were, for a long time, beyond the last glacial maximum. In this study, we analyzed the phylogeography of four freshwater fish taxa, Hemibarbus longirostris, dark chub Nipponocypris temminckii, Tanakia ssp. and Carassius ssp., whose distributions include both the Korean Peninsula and Western Japan. We found for each taxon that a small component of diverse Korean clades of freshwater fishes Citation: Taniguchi, S.; Bertl, J.; migrated in waves into the Japanese archipelago to form the current phylogeographic structure of Futschik, A.; Kishino, H.; Okazaki, T. -
Microplastics Pollution in the Seto Inland Sea and Sea Of
doi: 10.2965/jwet.19-127 Journal of Water and Environment Technology, Vol.18, No.3: 175–194, 2020 Original Article Microplastics Pollution in the Seto Inland Sea and Sea of Japan Surrounded Yamaguchi Prefecture Areas, Japan: Abundance, Characterization and Distribution, and Potential Occurrences A. H. M. Enamul Kabir, Masahiko Sekine, Tsuyoshi Imai, Koichi Yamamoto Division of Environmental Engineering, Graduate School of Sciences and Technology for Innovation, Yamaguchi University, Ube, Japan ABSTRACT Marine microplastics pollution has been an emerging global threat. This study investigated mi- croplastics pollution in the ‘Seto Inland Sea (SIS)’ and ‘Sea of Japan (SJ)’ surrounded Yamaguchi prefecture areas in Japan. The density separation method was applied to extract microplastics from sea surface sediment and water samples. Polymeric compounds were identified through ATR-FTIR analysis. The average microplastic abundances were 112.57 ± 121.30 items/kg in sediment and 57.46 ± 20.82 items/L in water. Abundance comparisons revealed similar level of pollution in both sea areas and medium to high-level pollution than others around the world. Characterization revealed that fragments and small microplastics (< 1,000 µm) predominated sediments. Fragments and films were major shapes in the SIS sediments while only fragments predominated the SJ sediments. Large microplastics (1,000–5,000 µm) fibers predominated water in all the areas. Transparent microplastics predominated both the sediments and water. Polyethylene, polyvinyl alcohol, and polypropylene were major polymers in sediments while polyethylene terephthalate and polyethylene predominated water. No significant correlations of microplastics abundances and characteristics were observed between sediment and water. Anthropogenic activities and environmental factors were speculated to be the main sources of microplastics in these areas. -
Red Sea Bream Culture in Ja~An
- III - 3~d Meeting of the I.C.E.S. Working Group on J~a~iculture, Rrest, Franae, May 10-13, 1977. Actes de Colloques du C.N.E.X.O., 4 : 111-117. RED SEA BREAM CULTURE IN JA~AN, by Jire KITTAKA Scheel of Fisheries Sciences, KÏtasate University, Sanriku-cho, Iwate-ken, Japan. ABSTRACT. The red sea bream becomes sexually mature ~hen 3 years old. The spa~ing season ex tends trom April to June. About 100-300 matured males and females are introduced in a' large tank of 100-1,000 m3 aapacity. The floating eggs are gathered and transferred into a net cage. The optimum incubation temperature ranges from 15;Oto 17~5°C, and the optimum specifia gra vity is higher than 1.023. The ne~ly hatched larvae are introduced into floating tanks hanged in a large conarete tank and aultured for about 10 days. The prelarvae are released into large aonarete tanks and cultured for about 20 days. O,yster eggs, rotifers (~achionus~liaatilis), eopepods eollected by net, and nauplius of Artemia salina are used for feeding i ividuals in prelarval stage. The survival rates of prelarvae are improved in tanks ~ith abunàant propaga tion of uni-cellular green algae. postlarvae are transferred into net cages installed at sea and reared to jry stage for about 10-40 days. Survival rate of trY from hatching to 20 mm total length is about 3 J. RESUME. La daurade royale atteint Za maturit4 sexueZle ~ l'âge de 3 ans. Sa saison de ponte s'4tend d'avril d juin.