Rho Activation at a Glance Rho Activation at a Glance

Total Page:16

File Type:pdf, Size:1020Kb

Rho Activation at a Glance Rho Activation at a Glance Cell Science at a Glance 1149 Rho activation at a family of small GTPases. Rho GTPases (GDP-bound) conformations. (Four Rho control multiple cellular processes, family members are GTPase deficient and glance including actin and microtubule bind GTP constitutively; little is known Rachel J. Buchsbaum dynamics, gene expression, the cell about their regulation.) There are three cycle, cell polarity and membrane classes of regulatory proteins that affect Division of Hematology/Oncology and Molecular Oncology Research Institute, Tufts-New England transport, through their ability to bind to the activation state of these cycling Rho Medical Center, 750 Washington Street, Boston, numerous downstream effectors, which molecules: guanine nucleotide exchange MA 02111, USA lead to diverse parallel downstream factors (GEFs), which promote exchange e-mail: [email protected] signaling pathways (Schwartz, 2004). of GTP for GDP; GTPase-activating Journal of Cell Science 120, 1149-1152 proteins (GAPs), which enhance the Published by The Company of Biologists 2007 Over 20 members of the Rho family have intrinsic GTP-hydrolysis activity, leading doi:10.1242/jcs.03428 been identified in mammalian cells to GTPase inactivation; and guanine- (Wennerberg and Der, 2005). These are nucleotide-dissociation inhibitors (GDIs), Cells receive a multitude of stimuli – represented here by the canonical proteins which bind to prenylated GDP-bound chemical (such as cytokines and growth Rho, Rac and Cdc42 and have been the Rho proteins and allow translocation factors) and physical (such as subject of numerous excellent reviews between membranes and the cytosol. mechanical stresses or adhesion to (Bishop and Hall, 2000; Ridley, 2001; Currently, the best understood regulators extracellular matrix or other cells) – that Boettner and Van Aelst, 2002; Ridley et of Rho activation in response to upstream influence cell function by affecting al., 2003; Burridge and Wennerberg, stimuli are the GEFs. intracellular signaling pathways. Very 2004; Jaffe and Hall, 2005). Like the often these stimuli involve cell surface classic monomeric Ras GTPase, most GEFs for Rho family proteins have been receptors or other molecules that Rho proteins act as switches by cycling identified in bacteria, plants, yeast, function through activation of the Rho between active (GTP-bound) and inactive worms, fruit flies and humans. Most RSKRho and MSKActivation at a Glance at a Glance Rachel J. Buchsbaum ECM GF LPA Thrombin Eph Semaphorin S. typhimurium Plexins LPA, Thrombin, etc. Integrins RTK GPCRs Eph receptors Plasma membrane Gα Gβ Gγ PIP2 PIP3 TKs Journal of Cell Science R-Ras CrkII DOCK180 SopE, SopE2 Key p130CAS Src Fak RhoG GTPases DOCK180 Dbs Ack HIV-1gp41 P ELMO Dbl Ephexin Vav Ack Ephexin Cbl-b hSiah1 Ephexin Classical GEFs p115RhoGEF LARG PDZ-RhoGEF APC PKA Ubi-Ubi PKA Lbc Asef Non-classical GEFs Kalirin 14-3-3 Trio GEF-H1 RasGTP nm23HI Eps8 GEF activators ITSN WASP Abi1 SOS P-Rex1 Microtubules Tiam1 GEF inhibitors IRSp53 RasGRF in il γ h β p o in 3 p PAK Fgd1 S GTPase effectors p115RhoGEF Net1 Par COOL-2 COOL-2 JIP2 CNK1 WAVE2 COOL-2 Scaffolds and Rho aPKC S6KF MLK3 Rac Cdc42 protein complexes Par6 Actin MLK2 MKK7 LMW p190RhoGAP ROS PTPASE COOL-1 Nucleus Golgi Cbl Fgd1 Net1 jcs.biologists.org Ect2 Effectors Ubi-Ubi © Journal of Cell Science 2007 (120, pp. 1149-1152) (See poster insert) 1150 Journal of Cell Science 120 () RhoGEF activity is mediated by catalytic well as a DH domain to promote GTP- the A-kinase-anchoring protein (AKAP) DH (Dbl homology) domains, which GDP exchange on Rac. PIP3 binding Lbc through C-terminal leucine zipper stabilize GTP-free Rho intermediates, relieves a similar DH-PH interaction that sequences is required for inhibition of its effectively leading to GTP loading blocks GTP-GDP exchange on Rac, exchange activity by PKA and 14-3-3. In owing to high intracellular GTP levels. while the DH-PH region itself blocks an addition, Rho family GEFs may also be DH domains contain three conserved allosteric Ras-binding site on SOS that downregulated by being targeted for regions and form related structures of regulates Ras activity. Recently degradation. Examples include SOCS1- elongated bundles of ␣-helices, in which published work indicates that EGF- stimulated Vav polyubiquitylation, Ras- amino acid variations confer specificity receptor-dependent phosphorylation of a stimulated polyubiquitylation of the towards individual GTPases. Almost all tyrosine residue near a downstream dual Ras-RacGEF RasGRF2, the DH-containing Rho family GEFs regulatory region is required to unmask ubiquitylation of murine SOS2, and the contain a PH (pleckstrin homology) the exchange activity of the Cdc42 GEF Cbl-directed ubiquitylation of COOL- domain immediately C-terminal to the COOL-1/␤PIX (Feng et al., 2006). 1/␤PIX. DH domain. DH-associated PH domains have several regulatory roles with regard GEFs have a number of other functional Multiple levels of regulation have been to DH domain and GEF function, domains, many of which couple to identified in the case of some Rho family including modulation of exchange upstream receptors or other signaling GEFs. Interaction of the PH domain of activity, interactions with phospholipids molecules. It is thus not surprising that RacGEF Vav with PIP3, for example, and proteins, and membrane targeting. protein-protein interactions also regulate allows tyrosine phosphorylation of GEF activity. Activated G␣13, released residues interacting with the GTPase- The identification of over 60 mammalian from its ␤␥ subunits by LPA- or binding pocket by Src/Syk tyrosine Rho family GEFs to date has revealed a thrombin-mediated stimulation of G- kinases (TKs) in response to T cell complex array of regulatory mechanisms protein-coupled receptors (GPCRs), can receptor signaling, further opening up for these proteins. The poster depicts the bind to and stimulate several RhoGEFs, access to the Rac-binding site. The best-studied GEFs and major themes in including Dbl, p115RhoGEF, PDZ- activation of P-Rex1 by PIP3 and G␤␥ their regulation. A comprehensive RhoGEF and LARG. The G␤␥ units bind subunits is blunted by PKA-mediated description is beyond the scope of this and activate Dbl, as mentioned above. The phosphorylation, and the exchange overview and I apologize to those hematopoietic RacGEF P-Rex1 is activity of the RacGEF Tiam1 is authors whose work is not included. activated by binding to both PIP3 and modulated by both phosphoinositide However, several excellent reviews have specific G␤␥ subunits. In the RacGEF binding and by phosphorylation on been published (Schmidt and Hall, 2002; Asef, interaction between the N-terminal threonine and tyrosine. Erickson and Cerione, 2004; Rossman et ABR region and the armadillo repeat al., 2005). domain of the adenomatous polyposis coli Change in intracellular location and protein (APC) relieves autoinhibition and localized activation of Rho GTPases is Journal of Cell Science A common theme in the regulation of promotes Rac exchange activity. Some another mechanism for regulation of Rho Rho family GEFs is relief of GEFs, such as Dbl, Dbs, and RasGRF1 family GEFs. Sometimes the PH domain intramolecular inhibitory interactions. and RasGRF2, form homo- or hetero- mediates translocation – for example, the This is illustrated by the constitutive oligomers through DH domain localization of Dbl and Lbc to actin stress activation of N-terminally truncated interactions that are required for full fibers. Some GEFs, such as Tiam1 and Dbl, Vav, Asef, Tiam1, Ect2 and Net1 function of the protein, whereas Fgd1 (a Cdc42GEF), contain a second mutants and C-terminally truncated dimerization of others (PDZ-RhoGEF, PH domain. In the case of Tiam1, the p115RhoGEF and Lbc mutants. Often LARG, p115RhoGEF) is inhibitory. In second PH-domain is required for the associated PH domain is involved in the case of the multidomain GEFs Kalirin membrane translocation; in Fgd1, a this intramolecular inhibition. In the and Trio that contain separate DH proline-rich N-terminal region, rather RhoGEF Dbl, for example, the N- domains for Rac and Rho, alternative than the PH domains, localizes the terminus binds to the PH domain, splicing leads to multiple isoforms that protein to subcortical actin and Golgi blocking access of the GTPase to the DH have different functional activities during structures. Other Rho family GEFs are domain. Phosphorylation by Ack1 or development. recruited to membranes by adaptor interaction with heterotrimeric G protein proteins, direct binding, or other protein ␤␥ subunits may relieve the inhibition. In GEF activity can also be downregulated interactions. Adaptor proteins such as the RacGEF Vav, an interaction between by interaction with inhibitory proteins Grb2 and SLP-76 are required for DH and PH domains that masks the Rac- – for example, the inhibition of Vav by localization of Vav to activated B- and T- binding site is induced by binding of binding of the C-terminus to Cbl-b or cell receptors. The DH-PH domains of phosphatidylinositol 4,5-bisphosphate hSiah1, the inhibition of p115RhoGEF ephexin directly interact with the (PIP2) to the PH domain and relieved by by binding of the C-terminus to the HIV- transmembrane receptor tyrosine kinase binding of phosphatidylinositol 3,4,5- 1gp41 protein, and the inhibition of EphA4. Binding of G␣13 after LPA or trisphosphate (PIP3). Complex inhibitory Tiam1 by binding of the N-terminus to thrombin stimulation induces intramolecular interactions have been the tumor suppressor
Recommended publications
  • Cytoplasmic Expression of Epithelial Cell Transforming Sequence 2 in Lung Adenocarcinoma and Its Implications for Malignant Progression
    Laboratory Investigation (2019) 99:551–567 https://doi.org/10.1038/s41374-018-0142-4 ARTICLE Cytoplasmic expression of epithelial cell transforming sequence 2 in lung adenocarcinoma and its implications for malignant progression 1 2 3 1 2 2 Zeinab Kosibaty ● Yoshihiko Murata ● Yuko Minami ● Tomoko Dai ● Junko Kano ● Ryota Matsuoka ● 2 2 Noriyuki Nakano ● Masayuki Noguchi Received: 8 March 2018 / Revised: 14 August 2018 / Accepted: 20 August 2018 / Published online: 12 December 2018 © United States & Canadian Academy of Pathology 2018 Abstract Epithelial cell transforming sequence 2 (ECT2), a guanine nucleotide exchange factor, is predominantly localized in the nucleus of non-transformed cells and functions to regulate cytokinesis. ECT2 is also localized in the cytoplasm of cancer cells. Aberrant cytoplasmic expression of ECT2 is thought to drive tumor growth and invasion. In this study, we investigated the cytoplasmic expression of ECT2 and its prognostic and biological significance in lung adenocarcinoma. Western blotting of cellular fractions from the nucleus and cytoplasm was performed to determine the subcellular localization of ECT2 in lung adenocarcinoma cell lines. The cytoplasmic expression of ECT2 in 167 lung fi 1234567890();,: 1234567890();,: adenocarcinomas was evaluated by immunohistochemistry and its clinical signi cance was examined using Kaplan–Meier curves and Cox regression analysis. Scraping cytology specimens of 13 fresh lung adenocarcinomas were used to assess the subcellular localization of ECT2 and its phosphorylation at Thr790 (P-ECT2(T790)). We found that ECT2 was localized in both the nucleus and cytoplasm of lung adenocarcinoma cell lines and tumor tissues. Cytoplasmic expression of ECT2 was detected by immunohistochemistry in 83 (50%) of the lung adenocarcinomas, and was found to increase during cancer progression.
    [Show full text]
  • Snapshot: Axon Guidance Pasterkamp R
    494 1 Cell Cell ??? SnapShot: Axon Guidance 153 SnapShot: XXXXXXXXXXXXXXXXXXXXXXXXXX 1 2 , ??MONTH?? ??DATE??, 200? ©200? Elsevier Inc. 200?©200? ElsevierInc. , ??MONTH?? ??DATE??, DOI R. Jeroen Pasterkamp and Alex L. Kolodkin , April11, 2013©2013Elsevier Inc. DOI http://dx.doi.org/10.1016/j.cell.2013.03.031 AUTHOR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1 AFFILIATIONDepartment of XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Neuroscience and Pharmacology, Rudolf Magnus Institute of Neuroscience, University Medical Center Utrecht, 3584 CG Utrecht, The Netherlands; 2Department of Neuroscience, HHMI, The Johns Hopkins University School of Medicine, Baltimore, MD 21212, USA Axon attraction and repulsion Surround repulsion Selective fasciculation Topographic mapping Self-avoidance Wild-type Dscam1 mutant Sema3A A Retina SC/Tectum EphB EphrinB P D D Mutant T A neuron N P A V V Genomic DNA P EphA EphrinA Slit Exon 4 (12) Exon 6 (48) Exon 9 (33) Exon 17 (2) Netrin Commissural axon guidance Surround repulsion of peripheral Grasshopper CNS axon Retinotectal mapping at the CNS midline nerves in vertebrates fasciculation in vertebrates Drosophila mushroom body XXXXXXXXX NEURITE/CELL Isoneuronal Sema3 Slit Sema1/4-6 Heteroneuronal EphrinA EphrinB FasII Eph Genomic DNA Pcdh-α (14) Pcdh-β (22) Pcdh-γ (22) Variable Con Variable Con Nrp Plexin ** *** Netrin LAMELLIPODIA Con DSCAM ephexin Starburst amacrine cells in mammalian retina Ras-GTP Vav See online version for legend and references. α-chimaerin GEFs/GAPs Robo FARP Ras-GDP LARG RhoGEF Kinases DCC cc0 GTPases PKA cc1 FAK Regulatory Mechanisms See online versionfor??????. Cdc42 GSK3 cc2 Rac PI3K P1 Rho P2 cc3 Abl Proteolytic cleavage P3 Regulation of expression (TF, miRNA, FILOPODIA srGAP Cytoskeleton regulatory proteins multiple isoforms) Sos Trio Pcdh Cis inhibition DOCK180 PAK ROCK Modulation of receptors’ output LIMK Myosin-II Colin Forward and reverse signaling Actin Trafcking and endocytosis NEURONAL GROWTH CONE Microtubules SnapShot: Axon Guidance R.
    [Show full text]
  • Cell Division Symmetry Control and Cancer Stem Cells
    AIMS Molecular Science, 7(2): 82–98. DOI: 10.3934/molsci.2020006 Received: 15 February 2020 Accepted: 26 April 2020 Published: 06 May 2020 http://www.aimspress.com/journal/Molecular Review Cell division symmetry control and cancer stem cells Sreemita Majumdar and Song-Tao Liu* Department of Biological Sciences, University of Toledo, Toledo, OH 43606, USA * Correspondence: Email: [email protected]; Tel: +14195307853. Table S1. Genes encoding polarity and fate-determinant proteins involved in asymmetric cell division. C. elegans1 D. melanogaster 1 Mammals1 Description2 Associated with/ Interactors 3 Cellular Localization (mammalian cell)4 Serine/threonine protein microtubule-associated protein cell membrane, peripheral and lateral, par-1 par-1 MARK1/2/3/4 kinase MAPT/TAU cytoplasm, dendrite RING, Lipid binding par-2 - - domain PDZ for membrane, cell junction, adherens junction, cell cortex, par-3 baz PARD3 Oligomerization domain at actin, PARD6 endomembrane system, NTD Continued on next page 2 C. elegans1 D. melanogaster 1 Mammals1 Description2 Associated with/ Interactors 3 Cellular Localization (mammalian cell)4 Serine/threonine-protein nucleus, mitochondria, cytoplasm, par-4 Lkb1 STK11/LKB1 STRAD complex kinase membrane 14-3-3 domain binding par-5 14-3-3 YWHAB phosphoserine/ adapter to many proteins cytoplasm phosphothreonine motif cell membrane, centriolar satellite, actin par-6 par-6 PARD6A/B/G PB1, CRIB, PDZ PARD3 cytoskeleton,centrosome, cytoplasm ,ruffles PARD3, and a PARD6 protein PB1, AGC-Kinase (PARD6A, PARD6B or PARD6G) pkc-3 aPKC PRKCI/Z domain, DAG binding, cytoplasm, nucleus, membrane and a GTPase protein (CDC42 or Zinc finger domain RAC1), LLGL1,ECT2 LRR and PDZ protein Cadherin, Scrib-APC-beta-catenin nucleoplasm, basolateral plasma membrane, let-413 scrib SCRIB family.
    [Show full text]
  • The Rac Gtpase in Cancer: from Old Concepts to New Paradigms Marcelo G
    Published OnlineFirst August 14, 2017; DOI: 10.1158/0008-5472.CAN-17-1456 Cancer Review Research The Rac GTPase in Cancer: From Old Concepts to New Paradigms Marcelo G. Kazanietz1 and Maria J. Caloca2 Abstract Rho family GTPases are critical regulators of cellular func- mislocalization of Rac signaling components. The unexpected tions that play important roles in cancer progression. Aberrant pro-oncogenic functions of Rac GTPase-activating proteins also activity of Rho small G-proteins, particularly Rac1 and their challenged the dogma that these negative Rac regulators solely regulators, is a hallmark of cancer and contributes to the act as tumor suppressors. The potential contribution of Rac tumorigenic and metastatic phenotypes of cancer cells. This hyperactivation to resistance to anticancer agents, including review examines the multiple mechanisms leading to Rac1 targeted therapies, as well as to the suppression of antitumor hyperactivation, particularly focusing on emerging paradigms immune response, highlights the critical need to develop ther- that involve gain-of-function mutations in Rac and guanine apeutic strategies to target the Rac pathway in a clinical setting. nucleotide exchange factors, defects in Rac1 degradation, and Cancer Res; 77(20); 5445–51. Ó2017 AACR. Introduction directed toward targeting Rho-regulated pathways for battling cancer. Exactly 25 years ago, two seminal papers by Alan Hall and Nearly all Rho GTPases act as molecular switches that cycle colleagues illuminated us with one of the most influential dis- between GDP-bound (inactive) and GTP-bound (active) forms. coveries in cancer signaling: the association of Ras-related small Activation is promoted by guanine nucleotide exchange factors GTPases of the Rho family with actin cytoskeleton reorganization (GEF) responsible for GDP dissociation, a process that normally (1, 2).
    [Show full text]
  • Regulation of the Mammalian Target of Rapamycin Complex 2 (Mtorc2)
    Regulation of the Mammalian Target Of Rapamycin Complex 2 (mTORC2) Inauguraldissertation Zur Erlangung der Würde eines Doktors der Philosophie vorgelegt der Philosophisch-Naturwissenschaftlichen Fakultät der Universität Basel von Klaus-Dieter Molle aus Heilbronn, Deutschland Basel, 2006 Genehmigt von der Philosophisch-Naturwissenschaftlichen Fakultät Auf Antrag von Prof. Michael N. Hall und Prof. Markus Affolter. Basel, den 21.11.2006 Prof. Hans-Peter Hauri Dekan Summary The growth controlling mammalian Target of Rapamycin (mTOR) is a conserved Ser/Thr kinase found in two structurally and functionally distinct complexes, mTORC1 and mTORC2. The tumor suppressor TSC1-TSC2 complex inhibits mTORC1 by acting on the small GTPase Rheb, but the role of TSC1-TSC2 and Rheb in the regulation of mTORC2 is unclear. Here we examined the role of TSC1-TSC2 in the regulation of mTORC2 in human embryonic kidney 293 cells. Induced knockdown of TSC1 and TSC2 (TSC1/2) stimulated mTORC2-dependent actin cytoskeleton organization and Paxillin phosphorylation. Furthermore, TSC1/2 siRNA increased mTORC2-dependent Ser473 phosphorylation of plasma membrane bound, myristoylated Akt/PKB. This suggests that loss of Akt/PKB Ser473 phosphorylation in TSC mutant cells, as reported previously, is due to inhibition of Akt/PKB localization rather than inhibition of mTORC2 activity. Amino acids and overexpression of Rheb failed to stimulate mTORC2 signaling. Thus, TSC1-TSC2 also inhibits mTORC2, but possibly independently of Rheb. Our results suggest that mTORC2 hyperactivation may contribute to the pathophysiology of diseases such as cancer and Tuberous Sclerosis Complex. i Acknowledgement During my PhD studies in the Biozentrum I received a lot of support from many people around me who I mention here to express my gratefulness.
    [Show full text]
  • The Atypical Guanine-Nucleotide Exchange Factor, Dock7, Negatively Regulates Schwann Cell Differentiation and Myelination
    The Journal of Neuroscience, August 31, 2011 • 31(35):12579–12592 • 12579 Cellular/Molecular The Atypical Guanine-Nucleotide Exchange Factor, Dock7, Negatively Regulates Schwann Cell Differentiation and Myelination Junji Yamauchi,1,3,5 Yuki Miyamoto,1 Hajime Hamasaki,1,3 Atsushi Sanbe,1 Shinji Kusakawa,1 Akane Nakamura,2 Hideki Tsumura,2 Masahiro Maeda,4 Noriko Nemoto,6 Katsumasa Kawahara,5 Tomohiro Torii,1 and Akito Tanoue1 1Department of Pharmacology and 2Laboratory Animal Resource Facility, National Research Institute for Child Health and Development, Setagaya, Tokyo 157-8535, Japan, 3Department of Biological Sciences, Tokyo Institute of Technology, Midori, Yokohama 226-8501, Japan, 4IBL, Ltd., Fujioka, Gumma 375-0005, Japan, and 5Department of Physiology and 6Bioimaging Research Center, Kitasato University School of Medicine, Sagamihara, Kanagawa 252-0374, Japan In development of the peripheral nervous system, Schwann cells proliferate, migrate, and ultimately differentiate to form myelin sheath. In all of the myelination stages, Schwann cells continuously undergo morphological changes; however, little is known about their underlying molecular mechanisms. We previously cloned the dock7 gene encoding the atypical Rho family guanine-nucleotide exchange factor (GEF) and reported the positive role of Dock7, the target Rho GTPases Rac/Cdc42, and the downstream c-Jun N-terminal kinase in Schwann cell migration (Yamauchi et al., 2008). We investigated the role of Dock7 in Schwann cell differentiation and myelination. Knockdown of Dock7 by the specific small interfering (si)RNA in primary Schwann cells promotes dibutyryl cAMP-induced morpholog- ical differentiation, indicating the negative role of Dock7 in Schwann cell differentiation. It also results in a shorter duration of activation of Rac/Cdc42 and JNK, which is the negative regulator of myelination, and the earlier activation of Rho and Rho-kinase, which is the positive regulator of myelination.
    [Show full text]
  • Focus on Cdc42 in Breast Cancer: New Insights, Target Therapy Development and Non-Coding Rnas
    Review Focus on Cdc42 in Breast Cancer: New Insights, Target Therapy Development and Non-Coding RNAs Yu Zhang †, Jun Li †, Xing-Ning Lai, Xue-Qiao Jiao, Jun-Ping Xiong and Li-Xia Xiong * Department of Pathophysiology, Jiangxi Province Key Laboratory of Tumor Pathogenesis and Molecular Pathology, Medical College, Nanchang University, 461 Bayi Road, Nanchang 330006, China; [email protected] (Y.Z.); [email protected] (J.L.); [email protected] (X.-N.L.); [email protected] (X.-Q.J.); [email protected] (J.-P.X.) * Correspondence: [email protected]; Tel.: +86-791-8636-0556 † These authors contributed equally to this work. Received: 30 December 2018; Accepted: 8 February 2019; Published: 11 February 2019 Abstract: Breast cancer is the most common malignant tumors in females. Although the conventional treatment has demonstrated a certain effect, some limitations still exist. The Rho guanosine triphosphatase (GTPase) Cdc42 (Cell division control protein 42 homolog) is often upregulated by some cell surface receptors and oncogenes in breast cancer. Cdc42 switches from inactive guanosine diphosphate (GDP)-bound to active GTP-bound though guanine-nucleotide- exchange factors (GEFs), results in activation of signaling cascades that regulate various cellular processes such as cytoskeletal changes, proliferation and polarity establishment. Targeting Cdc42 also provides a strategy for precise breast cancer therapy. In addition, Cdc42 is a potential target for several types of non-coding RNAs including microRNAs and lncRNAs. These non-coding RNAs is extensively involved in Cdc42-induced tumor processes, while many of them are aberrantly expressed. Here, we focus on the role of Cdc42 in cell morphogenesis, proliferation, motility, angiogenesis and survival, introduce the Cdc42-targeted non-coding RNAs, as well as present current development of effective Cdc42-targeted inhibitors in breast cancer.
    [Show full text]
  • Small Rho Gtpase Family Member Cdc42 and Its Role in Neuronal Survival and Apoptosis
    University of Denver Digital Commons @ DU Electronic Theses and Dissertations Graduate Studies 1-1-2017 Small Rho GTPase Family Member Cdc42 and Its Role in Neuronal Survival and Apoptosis Noelle Christine Punessen University of Denver Follow this and additional works at: https://digitalcommons.du.edu/etd Part of the Biology Commons, and the Genetics and Genomics Commons Recommended Citation Punessen, Noelle Christine, "Small Rho GTPase Family Member Cdc42 and Its Role in Neuronal Survival and Apoptosis" (2017). Electronic Theses and Dissertations. 1337. https://digitalcommons.du.edu/etd/1337 This Thesis is brought to you for free and open access by the Graduate Studies at Digital Commons @ DU. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of Digital Commons @ DU. For more information, please contact [email protected],[email protected]. Small Rho GTPase Family Member Cdc42 and its Role in Neuronal Survival and Apoptosis A Thesis Presented to the Faculty of Natural Sciences and Mathematics University of Denver In Partial Fulfillment of the Requirements for the Degree Master of Science by Noelle C. Punessen August 2017 Advisor: Dr. Daniel A. Linseman Author: Noelle C. Punessen Title: Small Rho GTPase Family Member Cdc42 and its Role in Neuronal Survival and Apoptosis Advisor: Dr. Daniel A. Linseman Degree Date: August 2017 Abstract Neurodegenerative diseases such as amyotrophic lateral sclerosis (ALS), Alzheimer’s and Parkinson’s disease are caused by a progressive and aberrant destruction of neurons in the brain and spinal cord. These disorders lack effective long term treatments, and existing options focus primarily on either delaying disease onset or alleviating symptomology.
    [Show full text]
  • Supplementary Information Method CLEAR-CLIP. Mouse Keratinocytes
    Supplementary Information Method CLEAR-CLIP. Mouse keratinocytes of the designated genotype were maintained in E-low calcium medium. Inducible cells were treated with 3 ug/ml final concentration doxycycline for 24 hours before performing CLEAR-CLIP. One 15cm dish of confluent cells was used per sample. Cells were washed once with cold PBS. 10mls of cold PBS was then added and cells were irradiated with 300mJ/cm2 UVC (254nM wavelength). Cells were then scraped from the plates in cold PBS and pelleted by centrifugation at 1,000g for 2 minutes. Pellets were frozen at -80oC until needed. Cells were then lysed on ice with occasional vortexing in 1ml of lysis buffer (50mM Tris-HCl pH 7.4, 100mM NaCl, 1mM MgCl2, 0.1 mM CaCl2, 1% NP-40, 0.5% Sodium Deoxycholate, 0.1% SDS) containing 1X protease inhibitors (Roche #88665) and RNaseOUT (Invitrogen #10777019) at 4ul/ml final concentration. Next, TurboDNase (Invitrogen #AM2238, 10U), RNase A (0.13ug) and RNase T1 (0.13U) were added and samples were incubated at 37oC for 5 minutes with occasional mixing. Samples were immediately placed on ice and then centrifuged at 16,160g at 4oC for 20 minutes to clear lysate. 25ul of Protein-G Dynabeads (Invitrogen #10004D) were used per IP. Dynabeads were pre-washed with lysis buffer and pre- incubated with 3ul of Wako Anti-Mouse-Ago2 (2D4) antibody. The dynabead/antibody mixture was added to the lysate and rocked for 2 hours at 4oC. All steps after the IP were done on bead until samples were loaded into the polyacrylamide gel.
    [Show full text]
  • G Protein Regulation of MAPK Networks
    Oncogene (2007) 26, 3122–3142 & 2007 Nature Publishing Group All rights reserved 0950-9232/07 $30.00 www.nature.com/onc REVIEW G Protein regulation of MAPK networks ZG Goldsmith and DN Dhanasekaran Fels Institute for Cancer Research and Molecular Biology, Temple University School of Medicine, Philadelphia, PA, USA G proteins provide signal-coupling mechanisms to hepta- the a-subunits has been used as a basis for the helical cell surface receptors and are criticallyinvolved classification of G proteins into Gs,Gi,Gq and G12 in the regulation of different mitogen-activated protein families in which the a-subunits that show more than kinase (MAPK) networks. The four classes of G proteins, 50% homology are grouped together (Simon et al., defined bythe G s,Gi,Gq and G12 families, regulate 1991). In G-protein-coupled receptor (GPCR)-mediated ERK1/2, JNK, p38MAPK, ERK5 and ERK6 modules by signaling pathways, ligand-activated receptors catalyse different mechanisms. The a- as well as bc-subunits are the exchange of the bound GDP to GTP in the a-subunit involved in the regulation of these MAPK modules in a following which the GTP-bound a-subunit disassociate context-specific manner. While the a- and bc-subunits from the receptor as well as the bg-subunit. The GTP- primarilyregulate the MAPK pathwaysvia their respec- bound a-subunit and the bg-subunit stimulate distinct tive effector-mediated signaling pathways, recent studies downstream effectors including enzymes, ion channels have unraveled several novel signaling intermediates and small GTPase, thus regulating multiple signaling including receptor tyrosine kinases and small GTPases pathways including those involved in the activation of through which these G-protein subunits positivelyas well mitogen-activated protein kinase (MAPK) modules as negativelyregulate specific MAPK modules.
    [Show full text]
  • Cldn19 Clic2 Clmp Cln3
    NewbornDx™ Advanced Sequencing Evaluation When time to diagnosis matters, the NewbornDx™ Advanced Sequencing Evaluation from Athena Diagnostics delivers rapid, 5- to 7-day results on a targeted 1,722-genes. A2ML1 ALAD ATM CAV1 CLDN19 CTNS DOCK7 ETFB FOXC2 GLUL HOXC13 JAK3 AAAS ALAS2 ATP1A2 CBL CLIC2 CTRC DOCK8 ETFDH FOXE1 GLYCTK HOXD13 JUP AARS2 ALDH18A1 ATP1A3 CBS CLMP CTSA DOK7 ETHE1 FOXE3 GM2A HPD KANK1 AASS ALDH1A2 ATP2B3 CC2D2A CLN3 CTSD DOLK EVC FOXF1 GMPPA HPGD K ANSL1 ABAT ALDH3A2 ATP5A1 CCDC103 CLN5 CTSK DPAGT1 EVC2 FOXG1 GMPPB HPRT1 KAT6B ABCA12 ALDH4A1 ATP5E CCDC114 CLN6 CUBN DPM1 EXOC4 FOXH1 GNA11 HPSE2 KCNA2 ABCA3 ALDH5A1 ATP6AP2 CCDC151 CLN8 CUL4B DPM2 EXOSC3 FOXI1 GNAI3 HRAS KCNB1 ABCA4 ALDH7A1 ATP6V0A2 CCDC22 CLP1 CUL7 DPM3 EXPH5 FOXL2 GNAO1 HSD17B10 KCND2 ABCB11 ALDOA ATP6V1B1 CCDC39 CLPB CXCR4 DPP6 EYA1 FOXP1 GNAS HSD17B4 KCNE1 ABCB4 ALDOB ATP7A CCDC40 CLPP CYB5R3 DPYD EZH2 FOXP2 GNE HSD3B2 KCNE2 ABCB6 ALG1 ATP8A2 CCDC65 CNNM2 CYC1 DPYS F10 FOXP3 GNMT HSD3B7 KCNH2 ABCB7 ALG11 ATP8B1 CCDC78 CNTN1 CYP11B1 DRC1 F11 FOXRED1 GNPAT HSPD1 KCNH5 ABCC2 ALG12 ATPAF2 CCDC8 CNTNAP1 CYP11B2 DSC2 F13A1 FRAS1 GNPTAB HSPG2 KCNJ10 ABCC8 ALG13 ATR CCDC88C CNTNAP2 CYP17A1 DSG1 F13B FREM1 GNPTG HUWE1 KCNJ11 ABCC9 ALG14 ATRX CCND2 COA5 CYP1B1 DSP F2 FREM2 GNS HYDIN KCNJ13 ABCD3 ALG2 AUH CCNO COG1 CYP24A1 DST F5 FRMD7 GORAB HYLS1 KCNJ2 ABCD4 ALG3 B3GALNT2 CCS COG4 CYP26C1 DSTYK F7 FTCD GP1BA IBA57 KCNJ5 ABHD5 ALG6 B3GAT3 CCT5 COG5 CYP27A1 DTNA F8 FTO GP1BB ICK KCNJ8 ACAD8 ALG8 B3GLCT CD151 COG6 CYP27B1 DUOX2 F9 FUCA1 GP6 ICOS KCNK3 ACAD9 ALG9
    [Show full text]
  • CDC42 and Three Newly Identified Genes Including the Ras-Related
    Proc. Natl. Acad. Sci. USA Vol. 86, pp. 9976-9980, December 1989 Genetics Multicopy suppression of the cdc24 budding defect in yeast by CDC42 and three newly identified genes including the ras-related gene RSRI (cell polarity/cell cycle/morphogenesis/Saccharomyces cerevisiae/guanine nucleotide-binding protein) ALAN BENDER AND JOHN R. PRINGLE Department of Biology, The University of Michigan, Ann Arbor, MI 48109 Communicated by Leland Hartwell, July 31, 1989 ABSTRACT Genes CDC24, CDC42, and CDC43 are re- Johnson, and J.R.P., unpublished data), and overproduction quired for the establishment ofcell polarity and the localization of the CDC42 product can produce a mislocalization of of secretion in Saccharomyces cerevisiae; mutants defective in budding sites like that seen in some cdc24 mutants (D. these genes fail to form buds and display isotropic expansion of Johnson and J.R.P., unpublished data). Sequencing of the cell surface. To identify other genes that may be involved CDC42 (D. Johnson and J.R.P., unpublished data) revealed in these processes, we screened yeast genomic DNA libraries for that it is a member of the rho family (11) of ras oncogene- heterologous genes that, when overexpressed from a plasmid, related genes and encodes typical domains for GTP binding can suppress a temperature-sensitive cdc24 mutation. We and hydrolysis. Moreover, its C-terminal sequence suggests identified four such genes. One of these proved to be CDC42, that the CDC42 product, like the ras products, may be which has previously been shown to be a member of the rho modified and thence membrane-associated. The available (ras-homologous) family of genes, and a second is a newly observations suggest a tentative model in which the products identified ras-related gene that we named RSR1.
    [Show full text]