Fishes of the Fiji Islands
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Phylogeny of the Damselfishes (Pomacentridae) and Patterns of Asymmetrical Diversification in Body Size and Feeding Ecology
bioRxiv preprint doi: https://doi.org/10.1101/2021.02.07.430149; this version posted February 8, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Phylogeny of the damselfishes (Pomacentridae) and patterns of asymmetrical diversification in body size and feeding ecology Charlene L. McCord a, W. James Cooper b, Chloe M. Nash c, d & Mark W. Westneat c, d a California State University Dominguez Hills, College of Natural and Behavioral Sciences, 1000 E. Victoria Street, Carson, CA 90747 b Western Washington University, Department of Biology and Program in Marine and Coastal Science, 516 High Street, Bellingham, WA 98225 c University of Chicago, Department of Organismal Biology and Anatomy, and Committee on Evolutionary Biology, 1027 E. 57th St, Chicago IL, 60637, USA d Field Museum of Natural History, Division of Fishes, 1400 S. Lake Shore Dr., Chicago, IL 60605 Corresponding author: Mark W. Westneat [email protected] Journal: PLoS One Keywords: Pomacentridae, phylogenetics, body size, diversification, evolution, ecotype Abstract The damselfishes (family Pomacentridae) inhabit near-shore communities in tropical and temperature oceans as one of the major lineages with ecological and economic importance for coral reef fish assemblages. Our understanding of their evolutionary ecology, morphology and function has often been advanced by increasingly detailed and accurate molecular phylogenies. Here we present the next stage of multi-locus, molecular phylogenetics for the group based on analysis of 12 nuclear and mitochondrial gene sequences from 330 of the 422 damselfish species. -
Bülent's High Energy Reef
FOURTH QUARTER 2016 I VOLUME 10 Plectranthias pelicieri: ONE ASTONISHING PERCHLET BÜLENT’S HIGH ENERGY REEF BOXING SHRIMPS in the ring! Reef Hobbyist Magazine 1 FOURTH QUARTER 2016 | Volume 10 FEATURES Copyright © 2016 Reef Hobbyist Magazine. All rights reserved. ANNOUNCEMENTS KEEPING LPS HAPPY • Care to share your breeding or husbandry success with the world? We are Debora Długopolska lives in Poland always looking for interesting articles to share with our readers. Email us your 6 and has been keeping reefs for ideas through the "Contact Us" tab on our website. 4 years. During that time, she has refined her • Hard copy subscriptions are available to hobbyists in the United States! Scan the methodology with LPS and explains the approach that QR code below or visit us at www.reefhobbyistmagazine.com to subscribe. has brought her success and led to this beautiful tank. RHM-SPONSORED EVENTS PLECTRANTHIAS PELICIERI: ONE (our latest issues are available at these sponsored events) 12 ASTONISHING PERCHLET • Red River Reef & Reptile Expo: October 1, Fargo, ND Mindy van Leur has been a reefkeeper since the redriverreefandreptileexpo.com early 90s with an affinity for SPS corals and helping • Mid-Atlantic Marine Aquarium Expo: October 8, Chesapeake, VA new hobbyists. Mindy is understandably enchanted midatlanticmas.org/mamax-2016/ with her Pelicier’s Perchlet and shares its charms • Ladies Frag Swapping Bi-annual Frag Party: October 8, Sturgis, MI with our readers. • Reeftoberfest: October 15, Las Vegas, NV reefsoflasvegas.com/events NOT ANOTHER BRINE • Aquatic Experience: November 4-6, Chicago, IL SHRIMP ARTICLE aquaticexperience.org 18 Jason Oneppo is a 25-year veteran • Lonestar Marine Aquarist Rally: November 6, San Antonio, TX in the aquarium industry and has been doing R&D maast.org/lmar for San Francisco Bay Brand for more than a • Reef-A-Palooza: November 19-20, Costa Mesa, CA decade. -
The Importance of Live Coral Habitat for Reef Fishes and Its Role in Key Ecological Processes
ResearchOnline@JCU This file is part of the following reference: Coker, Darren J. (2012) The importance of live coral habitat for reef fishes and its role in key ecological processes. PhD thesis, James Cook University. Access to this file is available from: http://eprints.jcu.edu.au/23714/ The author has certified to JCU that they have made a reasonable effort to gain permission and acknowledge the owner of any third party copyright material included in this document. If you believe that this is not the case, please contact [email protected] and quote http://eprints.jcu.edu.au/23714/ THE IMPORTANCE OF LIVE CORAL HABITAT FOR REEF FISHES AND ITS ROLE IN KEY ECOLOGICAL PROCESSES Thesis submitted by Darren J. Coker (B.Sc, GDipResMeth) May 2012 For the degree of Doctor of Philosophy In the ARC Centre of Excellence for Coral Reef Studies and AIMS@JCU James Cook University Townsville, Queensland, Australia Statement of access I, the undersigned, the author of this thesis, understand that James Cook University will make it available for use within the University Library and via the Australian Digital Thesis Network for use elsewhere. I understand that as an unpublished work this thesis has significant protection under the Copyright Act and I do not wish to put any further restrictions upon access to this thesis. Signature Date ii Statement of sources Declaration I declare that this thesis is my own work and has not been submitted in any form for another degree or diploma at my university or other institution of tertiary education. Information derived from the published or unpublished work of others has been acknowledged in the text and a list of references is given. -
Order GASTEROSTEIFORMES PEGASIDAE Eurypegasus Draconis
click for previous page 2262 Bony Fishes Order GASTEROSTEIFORMES PEGASIDAE Seamoths (seadragons) by T.W. Pietsch and W.A. Palsson iagnostic characters: Small fishes (to 18 cm total length); body depressed, completely encased in Dfused dermal plates; tail encircled by 8 to 14 laterally articulating, or fused, bony rings. Nasal bones elongate, fused, forming a rostrum; mouth inferior. Gill opening restricted to a small hole on dorsolat- eral surface behind head. Spinous dorsal fin absent; soft dorsal and anal fins each with 5 rays, placed posteriorly on body. Caudal fin with 8 unbranched rays. Pectoral fins large, wing-like, inserted horizon- tally, composed of 9 to 19 unbranched, soft or spinous-soft rays; pectoral-fin rays interconnected by broad, transparent membranes. Pelvic fins thoracic, tentacle-like,withI spine and 2 or 3 unbranched soft rays. Colour: in life highly variable, apparently capable of rapid colour change to match substrata; head and body light to dark brown, olive-brown, reddish brown, or almost black, with dorsal and lateral surfaces usually darker than ventral surface; dorsal and lateral body surface often with fine, dark brown reticulations or mottled lines, sometimes with irregular white or yellow blotches; tail rings often encircled with dark brown bands; pectoral fins with broad white outer margin and small brown spots forming irregular, longitudinal bands; unpaired fins with small brown spots in irregular rows. dorsal view lateral view Habitat, biology, and fisheries: Benthic, found on sand, gravel, shell-rubble, or muddy bottoms. Collected incidentally by seine, trawl, dredge, or shrimp nets; postlarvae have been taken at surface lights at night. -
Omobranchus with Descriptions of Three New Species and Notes on Other Species of the Tribe Omobranchini
Revision of the Blenniid Fish Genus Omobranchus with Descriptions of Three New Species and Notes on Other Species of the Tribe Omobranchini VICTOR G. SPRINGER and MARTIN F. GOMON SMITHSONIAN CONTRIBUTIONS TO ZOOLOGY • NUMBER 177 SERIAL PUBLICATIONS OF THE SMITHSONIAN INSTITUTION The emphasis upon publications as a means of diffusing knowledge was expressed by the first Secretary of the Smithsonian Institution. In his formal plan for the Insti- tution, Joseph Henry articulated a program that included the following statement: "It is proposed to publish a series of reports, giving an account of the new discoveries in science, and of the changes made from year to year in all branches of knowledge." This keynote of basic research has been adhered to over the years in the issuance of thousands of titles in serial publications under the Smithsonian imprint, com- mencing with Smithsonian Contributions to Knowledge in 1848 and continuing with the following active series: Smithsonian Annals of Flight Smithsonian Contributions to Anthropology Smithsonian Contributions to Astrophysics Smithsonian Contributions to Botany Smithsonian Contributions to the Earth Sciences Smithsonian Contributions to Paleobiology Smithsonian Contributions to Zoology Smithsonian Studies in History and Technology In these series, the Institution publishes original articles and monographs dealing with the research and collections of its several museums and offices and of professional colleagues at other institutions of learning. These papers report newly acquired facts, synoptic interpretations of data, or original theory in specialized fields. These pub- lications are distributed by mailing lists to libraries, laboratories, and other interested institutions and specialists throughout the world. Individual copies may be obtained from the Smithsonian Institution Press as long as stocks are available. -
Reef Fishes of the Bird's Head Peninsula, West
Check List 5(3): 587–628, 2009. ISSN: 1809-127X LISTS OF SPECIES Reef fishes of the Bird’s Head Peninsula, West Papua, Indonesia Gerald R. Allen 1 Mark V. Erdmann 2 1 Department of Aquatic Zoology, Western Australian Museum. Locked Bag 49, Welshpool DC, Perth, Western Australia 6986. E-mail: [email protected] 2 Conservation International Indonesia Marine Program. Jl. Dr. Muwardi No. 17, Renon, Denpasar 80235 Indonesia. Abstract A checklist of shallow (to 60 m depth) reef fishes is provided for the Bird’s Head Peninsula region of West Papua, Indonesia. The area, which occupies the extreme western end of New Guinea, contains the world’s most diverse assemblage of coral reef fishes. The current checklist, which includes both historical records and recent survey results, includes 1,511 species in 451 genera and 111 families. Respective species totals for the three main coral reef areas – Raja Ampat Islands, Fakfak-Kaimana coast, and Cenderawasih Bay – are 1320, 995, and 877. In addition to its extraordinary species diversity, the region exhibits a remarkable level of endemism considering its relatively small area. A total of 26 species in 14 families are currently considered to be confined to the region. Introduction and finally a complex geologic past highlighted The region consisting of eastern Indonesia, East by shifting island arcs, oceanic plate collisions, Timor, Sabah, Philippines, Papua New Guinea, and widely fluctuating sea levels (Polhemus and the Solomon Islands is the global centre of 2007). reef fish diversity (Allen 2008). Approximately 2,460 species or 60 percent of the entire reef fish The Bird’s Head Peninsula and surrounding fauna of the Indo-West Pacific inhabits this waters has attracted the attention of naturalists and region, which is commonly referred to as the scientists ever since it was first visited by Coral Triangle (CT). -
Taxonomic Research of the Gobioid Fishes (Perciformes: Gobioidei) in China
KOREAN JOURNAL OF ICHTHYOLOGY, Vol. 21 Supplement, 63-72, July 2009 Received : April 17, 2009 ISSN: 1225-8598 Revised : June 15, 2009 Accepted : July 13, 2009 Taxonomic Research of the Gobioid Fishes (Perciformes: Gobioidei) in China By Han-Lin Wu, Jun-Sheng Zhong1,* and I-Shiung Chen2 Ichthyological Laboratory, Shanghai Ocean University, 999 Hucheng Ring Rd., 201306 Shanghai, China 1Ichthyological Laboratory, Shanghai Ocean University, 999 Hucheng Ring Rd., 201306 Shanghai, China 2Institute of Marine Biology, National Taiwan Ocean University, Keelung 202, Taiwan ABSTRACT The taxonomic research based on extensive investigations and specimen collections throughout all varieties of freshwater and marine habitats of Chinese waters, including mainland China, Hong Kong and Taiwan, which involved accounting the vast number of collected specimens, data and literature (both within and outside China) were carried out over the last 40 years. There are totally 361 recorded species of gobioid fishes belonging to 113 genera, 5 subfamilies, and 9 families. This gobioid fauna of China comprises 16.2% of 2211 known living gobioid species of the world. This report repre- sents a summary of previous researches on the suborder Gobioidei. A recently diagnosed subfamily, Polyspondylogobiinae, were assigned from the type genus and type species: Polyspondylogobius sinen- sis Kimura & Wu, 1994 which collected around the Pearl River Delta with high extremity of vertebral count up to 52-54. The undated comprehensive checklist of gobioid fishes in China will be provided in this paper. Key words : Gobioid fish, fish taxonomy, species checklist, China, Hong Kong, Taiwan INTRODUCTION benthic perciforms: gobioid fishes to evolve and active- ly radiate. The fishes of suborder Gobioidei belong to the largest The gobioid fishes in China have long received little group of those in present living Perciformes. -
Title Damselfishes of the Genus Amblyglyphidodon from Japan
Title Damselfishes of the Genus Amblyglyphidodon from Japan Author(s) Yoshino, Tetsuo; Tominaga, Chihiro; Okamoto, Kazuhiro 琉球大学理学部紀要 = Bulletin of the College of Science. Citation University of the Ryukyus(36): 105-115 Issue Date 1983-09 URL http://hdl.handle.net/20.500.12000/15327 Rights Bull, College of Science. Univ% of the Ryukyus, No. 36, 1983 105 Damselfishes of the Genus Amblyglyphidodon from Japan Tetsuo YOSHINO* , Chihiro TOMINAGA* and Kazuhiro OKAMOTO" Abstract The damselfish genus Amblyglyphidodon is represented in Japan by the follow ing four species: A. aureus (Cuvier), A. ternatensis (Bleeker), A.curacao (Bloch) and A. leucogaster (Bleeker). Among these, A. aureus and A. ternatensis have not been reported from Japanese waters. A key, brief descriptions and illustra tions are provided for these four species. Damselfishes of the genus Amblyglyphidodon are commonly found at coral reefs in the tropical Indo-West Pacific region and easily distinguished from other damselfishes in having an orbicular body. This genus is composed of only six species, of which four are distributed in the tropical western Pacific (Allen, 1975). In Japan, there have been known only two species, A. curacao and A. leucogaster, from the Ryukyu Islands (Aoyagi, 1941; Matsubara, 1955; Masuda et al, 1980). During the course of studies on damselfishes from the Ryukyu Islands, we have collected two other species, A. aureus and A. ternatensis. A careful examination of these four species has revealed that some key characters used by Allen (1975) to distinguish A. ternatensis from the other three species are not valid for our specimens. In this report we describe and illustrate these four species from the Ryukyu Islands with some discussions on the taxonomic characters. -
Pomacentridae): Structural and Expression Variation in Opsin Genes
Molecular Ecology (2017) 26, 1323–1342 doi: 10.1111/mec.13968 Why UV vision and red vision are important for damselfish (Pomacentridae): structural and expression variation in opsin genes SARA M. STIEB,*† FABIO CORTESI,*† LORENZ SUEESS,* KAREN L. CARLETON,‡ WALTER SALZBURGER† and N. J. MARSHALL* *Sensory Neurobiology Group, Queensland Brain Institute, The University of Queensland, Brisbane, QLD 4072, Australia, †Zoological Institute, University of Basel, Basel 4051, Switzerland, ‡Department of Biology, The University of Maryland, College Park, MD 20742, USA Abstract Coral reefs belong to the most diverse ecosystems on our planet. The diversity in col- oration and lifestyles of coral reef fishes makes them a particularly promising system to study the role of visual communication and adaptation. Here, we investigated the evolution of visual pigment genes (opsins) in damselfish (Pomacentridae) and exam- ined whether structural and expression variation of opsins can be linked to ecology. Using DNA sequence data of a phylogenetically representative set of 31 damselfish species, we show that all but one visual opsin are evolving under positive selection. In addition, selection on opsin tuning sites, including cases of divergent, parallel, conver- gent and reversed evolution, has been strong throughout the radiation of damselfish, emphasizing the importance of visual tuning for this group. The highest functional variation in opsin protein sequences was observed in the short- followed by the long- wavelength end of the visual spectrum. Comparative gene expression analyses of a subset of the same species revealed that with SWS1, RH2B and RH2A always being expressed, damselfish use an overall short-wavelength shifted expression profile. Inter- estingly, not only did all species express SWS1 – a UV-sensitive opsin – and possess UV-transmitting lenses, most species also feature UV-reflective body parts. -
4. Nuralim ED Author Final Reupload02
Aceh Journal of Animal Science (2020) 5 (2): 87 - 91 Aceh Journal of Animal Science Journal homepage: www.jurnal.unsyiah.ac.id/AJAS Are Awaous ocellaris and Belobranchus belobranchus the two species of Nike fish schools ? Nuralim Pasisingi*, Sitty Ainsyah Habibie, Abdul Hafidz Olii Faculty of Fisheries and Marine Science, Gorontalo State University, Gorontalo, 96128, Indonesia ARTICEL INFO ABSTRACT Keywords: Investigating goby fish is vital to perform an integrated and comprehensive study in order to maintain the roles Awaous of the fish, thus providing balanced ecosystem functions and services, as well as contributing to fish biodiversity. Belobranchus Local societies simply recognize fish species by their local names, which are not common. This condition, in turn, Endemic causes hitches in conducting further studies. Nike, the name of a local fish, refers to the schools of goby fish Goby larvae whose adult phase has not been fully confirmed. This study aimed to reveal the species that categorizes as Gorontalo nike fish through tracing adult goby inhabiting freshwater. Two fish samples, i.e., Unknown 01 and Unknown 02, Nike fish were taken from two sites in Bone River, Gorontalo, Indonesia. These samples were captured purposively using a hand net by considering the morphological similarity between the two target samples and the general Received: 28 April 2020 characteristic of goby. Furthermore, the samples were analyzed genetically through the PCR sequencing method Accepted: 4 June 2020 using the Mitochondrial Cytochrome Oxidase Subunit 1 (CO1) gene. Based on the NCBI database, Unknown 01 Available online: 4 June 2020 had the highest similarity to Belobranchus belobranchus (99.54%), while Unknown 02 was identical with Awaous ocellaris (100%). -
FAMILY Ophichthidae Gunther, 1870
FAMILY Ophichthidae Gunther, 1870 - snake eels and worm eels SUBFAMILY Myrophinae Kaup, 1856 - worm eels [=Neenchelidae, Aoteaidae, Muraenichthyidae, Benthenchelyini] Notes: Myrophinae Kaup, 1856a:53 [ref. 2572] (subfamily) Myrophis [also Kaup 1856b:29 [ref. 2573]] Neenchelidae Bamber, 1915:478 [ref. 172] (family) Neenchelys [corrected to Neenchelyidae by Jordan 1923a:133 [ref. 2421], confirmed by Fowler 1934b:163 [ref. 32669], by Myers & Storey 1956:21 [ref. 32831] and by Greenwood, Rosen, Weitzman & Myers 1966:393 [ref. 26856]] Aoteaidae Phillipps, 1926:533 [ref. 6447] (family) Aotea [Gosline 1971:124 [ref. 26857] used Aotidae; family name sometimes seen as Aoteidae or Aoteridae] Muraenichthyidae Whitley, 1955b:110 [ref. 4722] (family) Muraenichthys [name only, used as valid before 2000?; not available] Benthenchelyini McCosker, 1977:13, 57 [ref. 6836] (tribe) Benthenchelys GENUS Ahlia Jordan & Davis, 1891 - worm eels [=Ahlia Jordan [D. S.] & Davis [B. M.], 1891:639] Notes: [ref. 2437]. Fem. Myrophis egmontis Jordan, 1884. Type by original designation (also monotypic). •Valid as Ahlia Jordan & Davis, 1891 -- (McCosker et al. 1989:272 [ref. 13288], McCosker 2003:732 [ref. 26993], McCosker et al. 2012:1191 [ref. 32371]). Current status: Valid as Ahlia Jordan & Davis, 1891. Ophichthidae: Myrophinae. Species Ahlia egmontis (Jordan, 1884) - key worm eel [=Myrophis egmontis Jordan [D. S.], 1884:44, Leptocephalus crenatus Strömman [P. H.], 1896:32, Pl. 3 (figs. 4-5), Leptocephalus hexastigma Regan [C. T.] 1916:141, Pl. 7 (fig. 6), Leptocephalus humilis Strömman [P. H.], 1896:29, Pl. 2 (figs. 7-9), Myrophis macrophthalmus Parr [A. E.], 1930:10, Fig. 1 (bottom), Myrophis microps Parr [A. E.], 1930:11, Fig. 1 (top)] Notes: [Proceedings of the Academy of Natural Sciences of Philadelphia v. -
Multi-Locus Fossil-Calibrated Phylogeny of Atheriniformes (Teleostei, Ovalentaria)
Molecular Phylogenetics and Evolution 86 (2015) 8–23 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Multi-locus fossil-calibrated phylogeny of Atheriniformes (Teleostei, Ovalentaria) Daniela Campanella a, Lily C. Hughes a, Peter J. Unmack b, Devin D. Bloom c, Kyle R. Piller d, ⇑ Guillermo Ortí a, a Department of Biological Sciences, The George Washington University, Washington, DC, USA b Institute for Applied Ecology, University of Canberra, Australia c Department of Biology, Willamette University, Salem, OR, USA d Department of Biological Sciences, Southeastern Louisiana University, Hammond, LA, USA article info abstract Article history: Phylogenetic relationships among families within the order Atheriniformes have been difficult to resolve Received 29 December 2014 on the basis of morphological evidence. Molecular studies so far have been fragmentary and based on a Revised 21 February 2015 small number taxa and loci. In this study, we provide a new phylogenetic hypothesis based on sequence Accepted 2 March 2015 data collected for eight molecular markers for a representative sample of 103 atheriniform species, cover- Available online 10 March 2015 ing 2/3 of the genera in this order. The phylogeny is calibrated with six carefully chosen fossil taxa to pro- vide an explicit timeframe for the diversification of this group. Our results support the subdivision of Keywords: Atheriniformes into two suborders (Atherinopsoidei and Atherinoidei), the nesting of Notocheirinae Silverside fishes within Atherinopsidae, and the monophyly of tribe Menidiini, among others. We propose taxonomic Marine to freshwater transitions Marine dispersal changes for Atherinopsoidei, but a few weakly supported nodes in our phylogeny suggests that further Molecular markers study is necessary to support a revised taxonomy of Atherinoidei.