Host Status of Selected Crops to Meloidogyne Chitwoodi
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Transcriptome Profiling of Resistance Response To
Bali et al. BMC Genomics (2019) 20:907 https://doi.org/10.1186/s12864-019-6257-1 RESEARCH ARTICLE Open Access Transcriptome profiling of resistance response to Meloidogyne chitwoodi introgressed from wild species Solanum bulbocastanum into cultivated potato Sapinder Bali1, Kelly Vining2, Cynthia Gleason1, Hassan Majtahedi3, Charles R. Brown3 and Vidyasagar Sathuvalli4* Abstract Background: Meloidogyne chitwoodi commonly known as Columbia root-knot nematode or CRKN is one of the most devastating pests of potato in the Pacific Northwest of the United States of America. In addition to the roots, it infects potato tubers causing internal as well as external defects, thereby reducing the market value of the crop. Commercial potato varieties with CRKN resistance are currently unavailable. Race specific resistance to CRKN has been introgressed from the wild, diploid potato species Solanum bulbocastanum into the tetraploid advanced selection PA99N82–4 but there is limited knowledge about the nature of its resistance mechanism. In the present study, we performed histological and differential gene expression profiling to understand the mode of action of introgressed CRKN resistance in PA99N82–4 in comparison to the CRKN susceptible variety Russet Burbank. Results: Histological studies revealed that the nematode juveniles successfully infect both resistant and susceptible root tissue by 48 h post inoculation, but the host resistance response restricts nematode feeding site formation in PA99N82–4. Differential gene expression analysis shows that 1268, 1261, 1102 and 2753 genes were up-regulated in PA99N82–4 at 48 h, 7 days, 14 days and 21 days post inoculation respectively, of which 61 genes were common across all the time points. -
PM 9/17 (1) Meloidogyne Chitwoodi and Meloidogyne Fallax
Bulletin OEPP/EPPO Bulletin (2013) 43 (3), 527–533 ISSN 0250-8052. DOI: 10.1111/epp.12079 European and Mediterranean Plant Protection Organization Organisation Europe´enne et Me´diterrane´enne pour la Protection des Plantes PM 9/17 (1) National regulatory control systems Systemes de lutte nationaux reglementaires PM 9/17 (1) Meloidogyne chitwoodi and Meloidogyne fallax Specific scope Specific approval and amendment This standard describes a National regulatory control sys- Approved in 2013-09. tem for Meloidogyne chitwoodi and Meloidogyne fallax. M. fallax, temperature, length of the growing season and Introduction soil texture. These nematodes have mostly been reported Meloidogyne chitwoodi and M. fallax (root-knot nematodes) from sandy and sandy-loam soils. Economic damage are EPPO A2 pests and details about their biology, distribu- increases with the number of generations that occur in one tion and economic importance can be found in EPPO/CABI growing season. Tuber damage in potatoes may occur when (1997) and the Plant Quarantine data Retrieval system soil temperatures exceed 1000 degree days above 5°C but (PQR) on the EPPO website. Recently, pest risk assess- the threshold for significant tuber damage is assessed to be ments for both species have been conducted for the territory about 1500 degree days above 5°C (Macleod et al., 2012). of the EU including extensive datasheets and an evaluation Juveniles of M. chitwoodi and M. fallax can only move of possible risk reduction options. The work has been con- short distances (<1 m) in the soil. Spread therefore mainly ducted within the framework of the EFSA project Prima occurs with the movement of infested planting material Phacie and the reports are available in the EFSA website (e.g. -
Review on Nematode Molecular Diagnostics: from Bands to Barcodes
Journal of Biology, Agriculture and Healthcare www.iiste.org ISSN 2224-3208 (Paper) ISSN 2225-093X (Online) Vol.4, No.27, 2014 Review on Nematode Molecular Diagnostics: From Bands to Barcodes Alemu Nega Department of Horticulture and Plant Science, Jimma University, P. O. Box 307, Jimma, Ethiopia Email Address: [email protected] Abstract Molecular methods of identification provide accurate, reliable diagnostic approaches for the identification of plant-parasitic nematodes. The promising and attractive results have generated increasing demands for applications in new fields and for better performing techniques. Initially, the techniques were used solely for taxonomic purposes, but increasingly became popular as a component of diagnostic information. Diagnostic procedures are now available to differentiate the plant-pathogenic species from related but non-pathogenic species. The microscopic size of plant parasitic nematodes poses problems and techniques have been developed to enrich samples to obtain qualitative and quantitative information on individual species. In addition, techniques are available to evaluate single nematodes, cysts or eggs of individual species in extracts from soil and plant tissue. DNA or RNA-based techniques are the most widely used approaches for identification, taxonomy and phylogenetic studies, although the development and use of other methods has been, and in some cases still is, important. DNA barcoding and the extraction of DNA from preserved specimens will aid considerably in diagnostic information. In addition, further review is needed to identify all recovered nematode and evaluation of promising treatments for use in integrated disease management strategy to manage not only regulated species such as the potato cyst nematodes Globodera rostochiensis and Globodera pallida, and root-knot nematode Meloidogyne. -
Distribution of Meloidogyne Species in Carrot in Brazil
Ciência Rural, Santa Maria, v.51:5,Distribution e20200552, of Meloidogyne 2021 species in carrot in Brazil. http://doi.org/10.1590/0103-8478cr202005521 ISSNe 1678-4596 CROP PROTECTION Distribution of Meloidogyne species in carrot in Brazil Tiago Garcia da Cunha1 Liliane Evangelista Visôtto1 Letícia Mendes Pinheiro1 Pedro Ivo Vieira Good God1 Juliana Magrinelli Osório Rosa2 Cláudio Marcelo Gonçalves Oliveira2 Everaldo Antônio Lopes1* 1Universidade Federal de Viçosa (UFV), Campus Rio Paranaíba, 38810-000, Rio Paranaíba, MG, Brasil. E-mail: [email protected]. *Corresponding author. 2Instituto Biológico, Campinas, SP, Brasil. ABSTRACT: Root-knot nematodes (RKN – Meloidogyne spp.) are one of the most serious threats to carrot production worldwide. In Brazil, carrots are grown throughout the year, and economic losses due to RKN are reported. Since little is known on the distribution of RKN species in carrot fields in Brazil, we collected plant and soil samples from 35 fields across six states. Based on the morphology of perineal patterns, esterase phenotypes and species-specific PCR, three Meloidogyne species were identified: 60% of the fields were infested with Meloidogyne incognita, M. javanica was reported in 42.9% of the areas, whereas M. hapla was detected in 17.1% of carrot fields. Mixed populations were reported in 20% of the areas with a predominance of M. incognita + M. javanica. The combination of morphological, biochemical, and molecular techniques is a useful approach to identify RKN species. Key words: Daucus carota, integrative taxonomy, isozyme phenotypes, species-specific PCR. Distribuição de espécies de Meloidogyne em cenoura no Brasil RESUMO: Os nematoides-das-galhas (RKN - Meloidogyne spp.) são uma das mais sérias ameaças à produção de cenoura no mundo. -
Meloidogyne Chitwoodi
EPPO quarantine pest Data Sheets on Quarantine Pests Meloidogyne chitwoodi IDENTITY Name:Meloidogyne chitwoodi Golden, O'Bannon, Santo & Finley Taxonomic position: Nematoda: Meloidogynidae Common names: Columbia root-knot nematode (English) Nématode cécidogène du Columbia (French) Bayer computer code: MELGCH EPPO A2 list: No. 227 HOSTS M. chitwoodi has a wide host range among several plant families (Santo et al., 1980; O'Bannon et al., 1982), including crop plants and common weed species. Potatoes (Solanum tuberosum) and tomatoes (Lycopersicon esculentum) are good hosts, while barley (Hordeum vulgare), maize (Zea mays), oats (Avena sativa), sugarbeet (Beta vulgaris var. saccharifera), wheat (Triticum aestivum) and various Poaceae (grasses and weeds) will maintain the nematode. Moderate to poor hosts occur in the Brassicaceae, Cucurbitaceae, Fabaceae, Lamiaceae, Liliaceae, Umbelliferae and Vitaceae. Capsicum annuum and tobacco (Nicotiana tabacum and N. rustica) are not hosts of M. chitwoodi. Lucerne (Medicago sativa) is a good host for race 2 but not for race 1, whereas carrots (Daucus carota) are a non-host for race 2 but a good host for race 1. Ferris et al. (1994), investigating suitable crops for rotation with potato in the presence of race 1 in USA, recommend Amaranthus, lucerne, rape (Brassica napus var. oleifera), Raphanus sativus var. oleifera and safflower (Carthamus tinctorius). In the Netherlands, host crops recorded to be attacked by M. chitwoodi are carrots, cereals, maize, peas (Pisum sativum), Phaseolus vulgaris, potatoes, Scorzonera hispanica, sugarbeet and tomatoes (OEPP/EPPO, 1991). GEOGRAPHICAL DISTRIBUTION M. chitwoodi was first described from the Pacific Northwest of the USA in 1980, its common name deriving from the Columbia River between Oregon and Washington states. -
Diagnostic Methods for Identification of Root-Knot Nematodes Species from Brazil
Ciência Rural, Santa Maria,Diagnostic v.48: methods 02, e20170449, for identification 2018 of root-knot nematodes specieshttp://dx.doi.org/10.1590/0103-8478cr20170449 from Brazil. 1 ISSNe 1678-4596 CROP PROTECTION Diagnostic methods for identification of root-knot nematodes species from Brazil Tiago Garcia da Cunha1 Liliane Evangelista Visôtto2* Everaldo Antônio Lopes1 Claúdio Marcelo Gonçalves Oliveira3 Pedro Ivo Vieira Good God1 1Instituto de Ciências Agrárias, Universidade Federal de Viçosa (UFV), Campus Rio Paranaíba, Rio Paranaíba, MG, Brasil. 2Instituto de Ciências Biológicas e da Saúde, Universidade Federal de Viçosa (UFV), Campus Rio Paranaíba, 38810-000, Rio Paranaíba, MG, Brasil. E-mail: [email protected]. *Corresponding author. 3Instituto Biológico, Campinas, SP, Brasil. ABSTRACT: The accurate identification of root-knot nematode (RKN) species (Meloidogyne spp.) is essential for implementing management strategies. Methods based on the morphology of adults, isozymes phenotypes and DNA analysis can be used for the diagnosis of RKN. Traditionally, RKN species are identified by the analysis of the perineal patterns and esterase phenotypes. For both procedures, mature females are required. Over the last few decades, accurate and rapid molecular techniques have been validated for RKN diagnosis, including eggs, juveniles and adults as DNA sources. Here, we emphasized the methods used for diagnosis of RKN, including emerging molecular techniques, focusing on the major species reported in Brazil. Key words: DNA, esterase, Meloidogyne, molecular biology, morphological pattern. Métodos diagnósticos usados na identificação de espécies do nematoide das galhas do Brasil RESUMO: A identificação acurada de espécies do nematoide das galhas (NG) (Meloidogyne spp.) é essencial para a implementação de estratégias de manejo. -
Prioritising Plant-Parasitic Nematode Species Biosecurity Risks Using Self Organising Maps
Prioritising plant-parasitic nematode species biosecurity risks using self organising maps Sunil K. Singh, Dean R. Paini, Gavin J. Ash & Mike Hodda Biological Invasions ISSN 1387-3547 Volume 16 Number 7 Biol Invasions (2014) 16:1515-1530 DOI 10.1007/s10530-013-0588-7 1 23 Your article is protected by copyright and all rights are held exclusively by Springer Science +Business Media Dordrecht. This e-offprint is for personal use only and shall not be self- archived in electronic repositories. If you wish to self-archive your article, please use the accepted manuscript version for posting on your own website. You may further deposit the accepted manuscript version in any repository, provided it is only made publicly available 12 months after official publication or later and provided acknowledgement is given to the original source of publication and a link is inserted to the published article on Springer's website. The link must be accompanied by the following text: "The final publication is available at link.springer.com”. 1 23 Author's personal copy Biol Invasions (2014) 16:1515–1530 DOI 10.1007/s10530-013-0588-7 ORIGINAL PAPER Prioritising plant-parasitic nematode species biosecurity risks using self organising maps Sunil K. Singh • Dean R. Paini • Gavin J. Ash • Mike Hodda Received: 25 June 2013 / Accepted: 12 November 2013 / Published online: 17 November 2013 Ó Springer Science+Business Media Dordrecht 2013 Abstract The biosecurity risks from many plant- North and Central America, Europe and the Pacific parasitic nematode (PPN) species are poorly known with very similar PPN assemblages to Australia as a and remain a major challenge for identifying poten- whole. -
Description and SEM Observations of Meloidogyne Chitwoodi N. Sp
Description and SEM Observations of Meloidogyne chitwoodi n. sp. (Meloidogynidae), a Root-knot Nematode on Potato in the Pacific Northwest A. Morgan Golden, J. H. O'Bannon, G. S. Santo, and A. M. Finley 1 Abstract: Meloidogyne chitwoodi n. sp. is described and illustrated from potato (Solanum tuberosum) originally collected from Quincy, Washington, USA. This new species resembles M. hapla, but its perineal pattern is basically round to oval with distinctive and broken, curled, or twisted striae around and above the anal area. The vulva is in a sunken area devoid of striae. Vesicles or vesicle-like structures are present in the median bulb of females. The larva tail, being short and blunt with a hyaline tail terminal having little or no taper to its rounded terminus, is distinctively different from M. hapla. SEM observations revealed the nature of the perineal pattern and details of the head of larvae and males, and showed the spicules to have dentate tips ventrally. Hosts for M. chitwoodi n. sp. include potato, tomato, corn, and wheat but not straw- berry, pepper, or peanut. The latter three crops are excellent hosts for M. hapla. The known distribntion of this new root-knot species presently involves certain areas of Idaho, Washington, and Oregon. The common name "Columbia root-knot nematode" is proposed for M. chitwoodi n. sp. Key Words: taxonomy, morphology, Meloidogyne, root-knot, new species, SEM ultra- structure, potato, Solarium tuberosum, hosts. In December 1974 an infected 'Russet Larvae for morphological examination Burbank' potato and dissected root-knot were generally recovered from fresh infected specimens which had been tentatively iden- roots, or egg sacs, that were kept in petri tified as Meloidogyne hapla Chitwood, 1949 dishes with a small amount of water. -
Meloidogyne Chitwoodi )
Amer J of Potato Res (2006) 83:1-8 1 Development and Evaluation of Potato Breeding Lines with Introgressed Resistance to Columbia Root-Knot Nematode (Meloidogyne chitwoodi ) C. R. Brown 1., H. Mojtahedi 1, S. James 2, R. G. Novy 3, and S. Love 4 ~USDA/ARS,Prosser, WA, USA 2Oregon State University, Central Oregon Experiment Station, Madras, OR, USA 3USDA/ARS,Aberdeen, ID, USA 4University of Idaho, Aberdeen Research and Extension Center, Aberdeen, ID, USA *Corresponding author: Tel: 509-786-9252; Fax: 509-786-9277; Email: [email protected] ABSTRACT of the nematode to reproduce on the root systems, was sufficiently effective to prevent economic damage in a Columbia root-knot nematode (Meloidogyne chit- field exposure. All CRN-resistant clones are pollen ster- woodi) (CRN) is a serious pest of potato in the Pacific fie. Germplasm listed is available upon request. Northwest of the USA. Because this nematode can repro- duce rapidly within a single growing season, small initial RESUMEN populations are capable of causing crop loss in the Columbia Basin of Washington or Oregon. Presently, soil E1 nematodo del nudo de Columbia (Meloidogyne fumigation is the main treatment for controlling CRN on chitwoodi) (CRN), es un pardsito serio de la papa en la potato. Developing potato varieties with resistance to zona del Pacifico noroeste de los EUA. Poblaciones ini- CRN is highly desirable to reduce the cost of control and ciales pequefias son capaces de ocasionar la p6rdida del to alleviate concerns about the effects of fumigants on cultivo, debido a la h~bilidad de este nematodo a repro- the environment. -
Genomic Markers Linked to Meloidogyne Chitwoodi Resistance
Genomic Markers Linked to Meloidogyne Chitwoodi Resistance Introgressed From Solanum Bulbocastanum to Cultivated Potato and Their Utilility in Marker-assisted Selection Sapinder Bali Washington State University Charles Brown USDA-ARS Temperate Tree Fruit and Vegetable Research Unit Hassan Mojtahedi USDA-ARS Temperate Tree Fruit and Vegetable Research Unit Solomon Yilma Oregon State University Russell E Ingham Oregon State University Launa Cimrhakl USDA-ARS Temperate Tree Fruit and Vegetable Research Unit Rich Quick USDA-ARS Temperate Tree Fruit and Vegetable Research Unit Vidyasagar Sathuvalli ( [email protected] ) Oregon State University https://orcid.org/0000-0001-5727-9987 Research Article Keywords: SSR markers, high-throughput SNPs, INDEL markers, Nematode resistance, Columbia root-knot nematode, resistance breeding Posted Date: August 4th, 2021 DOI: https://doi.org/10.21203/rs.3.rs-745462/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/9 Abstract Meloidogyne chitwoodi is a major threat to potato production in the Pacic Northwest region of United States. Infected tubers are rendered unmarketable, hence growers’ protability is adversely affected. Breeding for nematode resistance is a long-term process and phenotyping the segregating populations for nematode resistance is the most time-consuming and laborious part of the process. Using DNA-based markers closely linked to the nematode resistance trait for marker-assisted selection (MAS) could enhance breeding eciency and accuracy. In the present study, a pool of phenotyped progenies segregating for nematode resistance and susceptibility were ngerprinted using a 21K single nucleotide polymorphism (SNP) array. Eight candidate SNPs located on potato Chromosome 11, segregating with the nematode resistance trait were identied and used as landmarks for discovery of other marker types such as, simple sequence repeat (SSR) and insertion-deletion (INDEL) markers. -
Columbia Root-Knot Nematode Control in Potato
Columbia Root-knot Nematode Control in Potato EM 8740 • November 1999 Using Crop Rotations and Cover Crops $1.50 R. Ingham, R. Dick, and R. Sattell he Columbia root-knot nematode Dependence on fumigant nematicides can be (Meloidogyne chitwoodi) attacks potatoes reduced or eliminated if M. chitwoodi popula- T and causes injury to tubers in the Columbia tions are depressed sufficientlyDATE. by rotating Basin of Oregon and Washington as well as other potatoes with nonhost crops. Nematode popula- areas of the Pacific Northwest. Infected potato tions can be reduced further when cover crops tubers become rough and bumpy on the surface. with a nematicidalOF action are included in the Inside the potato, adult female nematodes rotation. produce brown spots that discolor further during frying. Control with The FDA does not allow nematodes in pro- OUT cessed potato products. If 5–15 percent of the nematicides tubers in a field are culled (i.e., rejected) because Nematicides kill nematodes directly if the of infection, the entire field may be rejected. IS nematodes are exposed to the agent long enough. Depending on the price for potatoes in a given However, when M. chitwoodi populations are year, the resulting loss can total $250,000 or high, application of nematicides may not reduce more for a 120-acre (49-ha) irrigated circle. nematode levels sufficiently to prevent economic M. chitwoodi can complete many generations damage. 1,3-dichloropropene (Telone II), applied during the Columbia Basin’s long, warm information:at rates recommended by its label, provides the growing season if host plants (plants in which best control of any single nematicide, but occa- M. -
1 Meloidogyne Species - a Diverse Group of Novel and Important Plant Parasites
1 Meloidogyne Species - a Diverse Group of Novel and Important Plant Parasites Maurice Moens1, Roland N. Perry2 and James L. Starr3 1 Institute for Agricultural and Fisheries Research, Merelbeke, Belgium and Ghent University, Ghent, Belgium; 2 Rothamsted Research, Harpenden, Hertfordshire, UK and Ghent University, Ghent, Belgium; 3 Texas A&M University, College Station, Texas, USA 1.1 Introduction I 1.2 Impact 2 1.3 History of the Genus 2 1.4 Current Trends in Species Identification 2 1.5 Life Cycle 3 1.6 Diversity in Biology 6 1.7 Major and Emerging Species 8 1.8 Interactions with Other Plant Pathogens 11 1.9 Management and Control 11 1.10 Conclusions and Future Directions 12 1.11 References 13 1.1 Introduction out showing external symptoms on the harvested products, e.g. symptomless potato tubers. The Root-knot nematodes are members or the genus rapid rate of developmem and reproduction on Meloidogyne (Gbldi, 1892), Meloidogyne is of Greek good hosts results, in the majority or species, in origin and means 'apple-shaped female'. They are several generations during one cropping season, an economically important polyphagous group or leading to severe crop damage. Damage may highly adapted obligate plant parasites, are dis• consist of various degrees of stunting, lack or vig• tributed worldwide and parasitize ncarly every our, and wilting under moisture stress. Secondary species of higher plant. Typically thcy reproduce infection by other pathogens often results in and feed on modified living plant cells within extensive decay of nematode-inlected tissues. The plant roots, where they induce small to large galls common explanation for these above-ground or root-knots, hence their vernacular name.