Description of Pratylenchus Dunensis Sp. N. (Nematoda: Pratylenchidae
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Non-Fumigant Alternative Soil Management Practices for Mitigating Replant Disease of Fruit Trees
NON-FUMIGANT ALTERNATIVE SOIL MANAGEMENT PRACTICES FOR MITIGATING REPLANT DISEASE OF FRUIT TREES: MECHANISMS CONTRIBUTING TO PRATYLENCHUS PENETRANS SUPPRESSION by Tristan Tanner Watson B.Sc. (Honours), The University of British Columbia, 2013 A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE COLLEGE OF GRADUATE STUDIES (Biology) THE UNIVERSITY OF BRITISH COLUMBIA (Okanagan) April 2018 © Tristan Tanner Watson, 2018 The following individuals certify that they have read, and recommend to the College of Graduate Studies for acceptance, a dissertation entitled: NON-FUMIGANT ALTERNATIVE SOIL MANAGEMENT PRACTICES FOR MITIGATING REPLANT DISEASE OF FRUIT TREES: MECHANISMS CONTRIBUTING TO PRATYLENCHUS PENETRANS SUPPRESSION submitted by Tristan Tanner Watson in partial fulfillment of the requirements of the degree of Doctor of Philosophy . Dr. Louise Nelson, Irving K. Barber School of Arts and Sciences Co-supervisor Dr. Thomas Forge, Agriculture and Agri-Food Canada Co-supervisor Dr. Melanie Jones, Irving K. Barber School of Arts and Sciences Supervisory Committee Member Dr. José Úrbez-Torres, Agriculture and Agri-Food Canada Supervisory Committee Member Dr. Paul Shipley, Irving K. Barber School of Arts and Sciences University Examiner Dr. Mario Tenuta, Faculty of Agricultural and Food Sciences, University of Manitoba External Examiner ii Abstract Replant disease presents a significant barrier to the reestablishment of orchards. In the Okanagan Valley, Canada, the root-lesion nematode, Pratylenchus penetrans, is widely distributed and implicated in poor growth of newly planted fruit trees. Restrictions on soil fumigants have generated interest in alternative management strategies for disease control. Using a combination of greenhouse and field experiments, this dissertation evaluated the effects of composts, bark chip mulch, biocontrol inoculation, and two different irrigation systems (drip emitter and microsprinkler) on the establishment of apple and sweet cherry trees in old orchard soil, P. -
Nematodes in Potato Soils in New Brunswick J Kimpinski I and EM
Canadian Plant Disease Survey 68:2,1988 147 Nematodes in potato soils in New Brunswick J Kimpinski I and EM. Smith2 Root-lesion nematodes (Pratylenchus spp.) were the dominant plant-parasitic nematodes in potato fields in the Grand Falls region of New Brunswick, Canada. Pratylenchus crenatus was more prevalent than P. penetrans. The northern root-knot nematode (Meloidogyne hapla) and clover-cyst nematode (Hetemdera trifolid were not detected in the survey. Can. Plant Dis. Surv. 68:2. 147-148, 1988. Dans des champs de pommes de terre de la region de Grand Falls au Nouveau-Brunswick (Canada), les principaux nematodes parasites des vegetaux identifies Btaient des nematodes radicicoles (Pratylenchus spp.). On a signale plus de Pratylenchus crenatus que de P. penetrans. On n'a pas trouve de nematode cecidogbne du nord (Meloidogyne hapla) ou de nematode B kyste du trefle (Heterodera trifolid au cours de I'enquste. Introduction and counted, and other nematode genera were identified with a stereomicroscope at 60 X Extracted nematodes were pre- A nematode survey conducted in 1979 in the Grand Falls . served in 5% formalin and up to 100 nematodes from each region of New Brunswick indicated that root-lesion nematodes sample were selected randomly and examined at 1000 X with (Pratylenchus crenatus Loof and P. penetrans (Cobb) Filipjev a compound microscope. and Sch. Stek.) were the dominant species of plant-parasitic nematodes in potato roots and soils (4).It was also determined that population levels of the northern root-knot nematode Results (Meloidogyne hapla Chitwood) were very low, being detected Root-lesion nematodes were the dominant plant-parasitic in only 5% of the root and soil samples. -
Investigation of the Development of Root Lesion Nematodes, Pratylenchus Spp
Türk. entomol. derg., 2021, 45 (1): 23-31 ISSN 1010-6960 DOI: http://dx.doi.org/10.16970/entoted.753614 E-ISSN 2536-491X Original article (Orijinal araştırma) Investigation of the development of root lesion nematodes, Pratylenchus spp. (Tylenchida: Pratylenchidae) in three chickpea cultivars Kök lezyon nematodlarının, Pratylenchus spp. (Tylenchida: Pratylenchidae) üç nohut çeşidinde gelişmesinin incelenmesi İrem AYAZ1 Ece B. KASAPOĞLU ULUDAMAR1* Tohid BEHMAND1 İbrahim Halil ELEKCİOĞLU1 Abstract In this study, penetration, population changes and reproduction rates of root lesion nematodes, Pratylenchus neglectus (Rensch, 1924), Pratylenchus penetrans (Cobb, 1917) and Pratylenchus thornei Sher & Allen, 1953 (Tylenchida: Pratylenchidae), at 3, 7, 14, 21, 28, 35, 42, 49 and 56 d after inoculation in chickpea Bari 2, Bari 3 (Cicer reticulatum Ladiz) and Cermi [Cicer echinospermum P.H.Davis (Fabales: Fabaceae)] were assessed in a controlled environment room in 2018-2019. No juveniles were observed in the roots in the first 3 d after inoculation. Although, population density of P. thornei reached the highest in Cermi (21 d), Bari 3 (42 d) and the lowest observed on Bari 2. Pratylenchus neglectus reached the highest population density in Bari 3 and Cermi on day 28. The population density of P. neglectus was the lowest in Bari 2. Also, population density of P. penetrans reached the highest in Bari 3 cultivar within 49 d, similar to P. thornei, whereas Bari 2 and Cermi had low population densities during the entire experimental period. Keywords: -
Burrowing Nematode Radopholus Similis (Cobb, 1893) Thorne, 1949 (Nematoda: Secernentea: Tylenchida: Pratylenchidae: Pratylenchinae)1 Nicholas Sekora and William T
EENY-542 Burrowing Nematode Radopholus similis (Cobb, 1893) Thorne, 1949 (Nematoda: Secernentea: Tylenchida: Pratylenchidae: Pratylenchinae)1 Nicholas Sekora and William T. Crow2 Introduction by fine textured soils rich in organic matter. However, soil texture plays a less important role on nematode population Radopholus similis, the burrowing nematode, is the most levels on banana (O’Bannon 1977). economically important nematode parasite of banana in the world. Infection by burrowing nematode causes toppling disease of banana, yellows disease of pepper and spreading Life Cycle and Biology decline of citrus. These diseases are the result of burrowing Burrowing nematode is an endoparasitic migratory nema- nematode infection destroying root tissue, leaving plants tode, meaning it completes its life cycle within root tissue. with little to no support or ability to take up water and All motile juvenile stages and females can infect root tissue translocate nutrients. Because of the damage that it causes at any point along the length of a root. After root penetra- to citrus, ornamentals and other agricultural industries, tion, these life stages mainly feed and migrate into the worldwide, burrowing nematode is one of the most regu- cortical parenchyma and also into the stele. Mature males lated nematode plant pests (Hockland et al. 2006). of burrowing nematode are not infective. As the mature females migrate through root tissue, they lay eggs that are Distribution produced through either sexual reproduction with males or by hermaphroditistim (Thorne 1961, Kaplan and Burrowing nematode is native to Australasia, but is found worldwide in tropical and subtropical regions of Africa, Opperman 2000). Once an egg hatches, the emergent Asia, Australia, North and South America, and many second-stage juvenile can migrate within the root and island regions. -
Phylogenetic Analysis of Nematodes of the Genus Pratylenchus Using Nuclear 26S Rdna
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Faculty Publications from the Harold W. Manter Laboratory of Parasitology Parasitology, Harold W. Manter Laboratory of February 1997 Phylogenetic Analysis of Nematodes of the Genus Pratylenchus Using Nuclear 26S rDNA Luma Al-Banna University of Jordan, [email protected] Valerie M. Williamson University of California, Davis, [email protected] Scott Lyell Gardner University of Nebraska - Lincoln, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/parasitologyfacpubs Part of the Parasitology Commons Al-Banna, Luma; Williamson, Valerie M.; and Gardner, Scott Lyell, "Phylogenetic Analysis of Nematodes of the Genus Pratylenchus Using Nuclear 26S rDNA" (1997). Faculty Publications from the Harold W. Manter Laboratory of Parasitology. 52. https://digitalcommons.unl.edu/parasitologyfacpubs/52 This Article is brought to you for free and open access by the Parasitology, Harold W. Manter Laboratory of at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Faculty Publications from the Harold W. Manter Laboratory of Parasitology by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Published in Molecular Phylogenetics and Evolution (ISSN: 1055-7903), vol. 7, no. 1 (February 1997): 94-102. Article no. FY960381. Copyright 1997, Academic Press. Used by permission. Phylogenetic Analysis of Nematodes of the Genus Pratylenchus Using Nuclear 26S rDNA Luma Al-Banna*, Valerie Williamson*, and Scott Lyell Gardner1 *Department of Nematology, University of California at Davis, Davis, California 95676-8668 1H. W. Manter Laboratory, Division of Parasitology, University of Nebraska State Museum, W-529 Nebraska Hall, University of Nebraska-Lincoln, Lincoln, NE 68588-0514; [email protected] Fax: (402) 472-8949. -
"Structure, Function and Evolution of the Nematode Genome"
Structure, Function and Advanced article Evolution of The Article Contents . Introduction Nematode Genome . Main Text Online posting date: 15th February 2013 Christian Ro¨delsperger, Max Planck Institute for Developmental Biology, Tuebingen, Germany Adrian Streit, Max Planck Institute for Developmental Biology, Tuebingen, Germany Ralf J Sommer, Max Planck Institute for Developmental Biology, Tuebingen, Germany In the past few years, an increasing number of draft gen- numerous variations. In some instances, multiple alter- ome sequences of multiple free-living and parasitic native forms for particular developmental stages exist, nematodes have been published. Although nematode most notably dauer juveniles, an alternative third juvenile genomes vary in size within an order of magnitude, com- stage capable of surviving long periods of starvation and other adverse conditions. Some or all stages can be para- pared with mammalian genomes, they are all very small. sitic (Anderson, 2000; Community; Eckert et al., 2005; Nevertheless, nematodes possess only marginally fewer Riddle et al., 1997). The minimal generation times and the genes than mammals do. Nematode genomes are very life expectancies vary greatly among nematodes and range compact and therefore form a highly attractive system for from a few days to several years. comparative studies of genome structure and evolution. Among the nematodes, numerous parasites of plants and Strikingly, approximately one-third of the genes in every animals, including man are of great medical and economic sequenced nematode genome has no recognisable importance (Lee, 2002). From phylogenetic analyses, it can homologues outside their genus. One observes high rates be concluded that parasitic life styles evolved at least seven of gene losses and gains, among them numerous examples times independently within the nematodes (four times with of gene acquisition by horizontal gene transfer. -
The Effect of Pratylenchus Zeae on the Growth and Yield of Upland Rice
The effect of Pratylenchus zeae on the growth and yield of upland rice Richard A. PLOWRIGHT",Danilo MATUS**, Tin AUNG**and Twng-Wah MEW** * CAB International Institute of Parasitology, 395 a, Hatfield Road, St. Albans, Hertfordshire, AL4 OXU, UK and ** International Rice Research Institute, P. O. Box 933, Manila, Philippines. SUMMARY The root lesion nematode Pratylenchus zeae is widely distributed on upland rice but its economic importance has not been assessed. In a field trial, following a five month clean fallow, the ofcontrol P. zeae using carbofuran, increased the yieldof cv. Upl Ri-5 whilst the yield of cv. Kinandang Patong was unaffected. Pre-sowing soil population densities (Pi) of P. zeae were low (0-1 11 nematodes/lOOml soil) and there were no obvious symptoms of infectionduring early vegetativegrowth although the plant height of Upl Ri-5 was slightly reduced. At harvest the yield of treated plants was increased byO/O 13-29of that of untreated plants having a mean infection of 1 350 nematodedg root(P < 0.05). In the glasshouse the rate of growth and tilleringof cv. IR36 was significantly reduced with a highPi (630-3 O00 nematodesllO0 cm3 soil). Infected root systems were stunted and mean root fresh weight was reduced by 40-60%. Although infection reducedthe no. of spikeletslplant, these plants had a higher harvest index and consequently grain yield was unaffected. The relationship between yield and the population density of P. zeae at different crop growth stages, in the field indicates low tolerance and a high relative minimum yield of 65O/o. RESUMÉ Influence de Pratylenchus zeae sur la croissance et la récolte du riz de plateau Pratylenchus zeae est très répandusur le riz de plateau mais son importance n'a jamais été évaluée. -
Diversity, Phylogeny, Characterization and Diagnostics of Root-Knot and Lesion Nematodes
Diversity, phylogeny, characterization and diagnostics of root-knot and lesion nematodes Toon Janssen Promotors: Prof. Dr. Wim Bert Prof. Dr. Gerrit Karssen Thesis submitted to obtain the degree of doctor in Sciences, Biology Proefschrift voorgelegd tot het bekomen van de graad van doctor in de Wetenschappen, Biologie 1 Table of contents Acknowledgements Chapter 1: general introduction 1 Organisms under study: plant-parasitic nematodes .................................................... 11 1.1 Pratylenchus: root-lesion nematodes ..................................................................................... 13 1.2 Meloidogyne: root-knot nematodes ....................................................................................... 15 2 Economic importance ..................................................................................................... 17 3 Identification of plant-parasitic nematodes .................................................................. 19 4 Variability in reproduction strategies and genome evolution ..................................... 22 5 Aims .................................................................................................................................. 24 6 Outline of this study ........................................................................................................ 25 Chapter 2: Mitochondrial coding genome analysis of tropical root-knot nematodes (Meloidogyne) supports haplotype based diagnostics and reveals evidence of recent reticulate evolution. 1 Abstract -
<I>Heterodera Glycines</I> Ichinohe
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Theses, Dissertations, and Student Research in Agronomy and Horticulture Agronomy and Horticulture Department Summer 8-5-2013 MULTIFACTORIAL ANALYSIS OF MORTALITY OF SOYBEAN CYST NEMATODE (Heterodera glycines Ichinohe) POPULATIONS IN SOYBEAN AND IN SOYBEAN FIELDS ANNUALLY ROTATED TO CORN IN NEBRASKA Oscar Perez-Hernandez University of Nebraska-Lincoln Follow this and additional works at: https://digitalcommons.unl.edu/agronhortdiss Part of the Plant Pathology Commons Perez-Hernandez, Oscar, "MULTIFACTORIAL ANALYSIS OF MORTALITY OF SOYBEAN CYST NEMATODE (Heterodera glycines Ichinohe) POPULATIONS IN SOYBEAN AND IN SOYBEAN FIELDS ANNUALLY ROTATED TO CORN IN NEBRASKA" (2013). Theses, Dissertations, and Student Research in Agronomy and Horticulture. 65. https://digitalcommons.unl.edu/agronhortdiss/65 This Article is brought to you for free and open access by the Agronomy and Horticulture Department at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Theses, Dissertations, and Student Research in Agronomy and Horticulture by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. MULTIFACTORIAL ANALYSIS OF MORTALITY OF SOYBEAN CYST NEMATODE (Heterodera glycines Ichinohe) POPULATIONS IN SOYBEAN AND IN SOYBEAN FIELDS ANNUALLY ROTATED TO CORN IN NEBRASKA by Oscar Pérez-Hernández A DISSERTATION Presented to the Faculty of The graduate College at the University of Nebraska In Partial Fulfillment of Requirements For the Degree of Doctor of Philosophy Major: Agronomy (Plant Pathology) Under the Supervision of Professor Loren J. Giesler Lincoln, Nebraska August, 2013 MULTIFACTORIAL ANALYSIS OF MORTALITY OF SOYBEAN CYST NEMATODE (Heterodera glycines Ichinohe) POPULATIONS IN SOYBEAN AND IN SOYBEAN FIELDS ANNUALLY ROTATED TO CORN IN NEBRASKA Oscar Pérez-Hernández, Ph.D. -
Description of Pratylenchus Gutierrezi N. Sp. (Nematoda: Pratylenchidae
Journal of Nematology 24(2):298-304. 1992. © The Society of Nematologists 1992. Description of Pratylenchus 9utierrezi n. sp. (Nematoda: Pratylenchidae) from Coffee in Costa Rica A. MORGAN GOLDEN, 1 ROGER L6PEZ CH., 2 AND HERNAN VILCHEZ R. 2 Abstract: A lesion nematode, Pratylenchu6 gutierrezi n. sp., collected from the roots of coffee in the Central Plateau of Costa Rica, is described and illustrated. Its relationships to Pratylenchusflakkensis, P. similis, and P. gibbicaudatus, the only other species of the genus having two head annules, males, or spermatheca with sperm, and an annulated tail terminus, is discussed. Other distinctive characters are its posterior vulva (mean of 80%); its prominently rounded stylet knobs, low head, and subcy- lindrical tail. SEM observations provide additional details of females and males, especially face views, which show for the first time sexual dimorphism. Key words: Coffea arabica, Costa Rica, lesion nematode, morphology, nematode, new species, Pra- tylenchus flakkensis, P. gibbicaudatus, P. gutierrezi n. sp., P. similis, scanning electron microscopy, SEM, taxonomy. Certain species of lesion nematodes to be a new Pratylenchus species, which is (Pratylenchus spp.) are important parasites described and illustrated herein. of coffee (Coffea spp.). In a recent excellent review of nematodes reported to occur on MATERIALS AND METHODS coffee (1), the following five Pratylenchus species were listed: P. brachyurus (Godfrey, Nematodes were extracted from in- 1929) Filipjev & Schuurmans Stekhoven, fected coffee roots by placing chopped or 1941; P. coffeae (Zimmermann, 1889) Fil- blenderized roots on filter paper over wa- ipjev & Schuurmans Stekhoven, 1941; P. ter in a Baermann funnel. Specimens were goodeyi Sher & Alien, 1953; P. -
Evaluation of Metabarcoding Primers for Analysis of Soil Nematode Communities
diversity Article Evaluation of Metabarcoding Primers for Analysis of Soil Nematode Communities Md. Maniruzzaman Sikder 1,2 , Mette Vestergård 1 , Rumakanta Sapkota 3 , Tina Kyndt 4 and Mogens Nicolaisen 1,* 1 Department of Agroecology, Faculty of Technical Sciences, Aarhus University, 4200 Slagelse, Denmark; [email protected] (M.M.S.); [email protected] (M.V.) 2 Department of Botany, Faculty of Biological Sciences, Jahangirnagar University, 1342 Savar, Dhaka, Bangladesh 3 Department of Environmental Science, Faculty of Technical Sciences, Aarhus University, 4000 Roskilde, Denmark; [email protected] 4 Department of Molecular Biotechnology, Faculty of Bioscience Engineering, Ghent University, 9000 Gent, Belgium; [email protected] * Correspondence: [email protected]; Tel.: +45-24757668 Received: 5 August 2020; Accepted: 7 October 2020; Published: 9 October 2020 Abstract: While recent advances in next-generation sequencing technologies have accelerated research in microbial ecology, the application of high throughput approaches to study the ecology of nematodes remains unresolved due to several issues, e.g., whether to include an initial nematode extraction step or not, the lack of consensus on the best performing primer combination, and the absence of a curated nematode reference database. The objective of this method development study was to compare different primer sets to identify the most suitable primer set for the metabarcoding of nematodes without initial nematode extraction. We tested four primer sets for amplicon sequencing: JB3/JB5 (mitochondrial, I3-M11 partition of COI gene), SSU_04F/SSU_22R (18S rRNA, V1-V2 regions), and Nemf/18Sr2b (18S rRNA, V6-V8 regions) from earlier studies, as well as MMSF/MMSR (18S rRNA, V4-V5 regions), a newly developed primer set. -
Research/Investigación Plant Parasitic Nematodes
RESEARCH/INVESTIGACIÓN PLANT PARASITIC NEMATODES ASSOCIATED WITH BANANA AND PLANTAIN IN EASTERN AND WESTERN DEMOCRATIC REPUBLIC OF CONGO M. Kamira1, 3, S. Hauser2, P. van Asten1,2, D. Coyne2, and H. L. Talwana3 1Consortium for Improving Agricultural-based Livelihoods in Central Africa (CIALCA) Project, Bukavu, Democratic Republic of Congo; 2International Institute of Tropical Agriculture (IITA); 3School of Agricultural Sciences Makerere University, Kampala, Uganda; Corresponding author [email protected] ABSTRACT Kamira M., S. Hauser, P. Van Asten, D. Coyne, and H. L. Talwana. 2013. Plant parasitic nematodes associated with banana and plantain in eastern and western Democratic Republic of Congo. Nematropica 43:216-225. Plant-parasitic nematode incidence, population densities and associated damage were determined from 153 smallholder banana and plantain gardens in Bas Congo (9 – 646 meters above sea level, m.a.s.l) and South Kivu (1043 – 2005 m.a.s.l), Democratic Republic of Congo, during 2010. Based on the frequency of total nematode soil and root extraction, Helicotylenchus multicinctus (89%), Meloidogyne spp. (54%) and Radopholus similis (30%) were the most widespread, while Pratylenchus goodeyi (18%) Helicotylenchus dihystera (18%), Rotylenchulus reniformis (14%), and Pratylenchus spp. (6%) were localized in occurrence. The occurrence and abundance of the nematode species was influenced by altitude:R. similis declined at elevations above 1300 m; P. goodeyi declined at elevations below 1200 m; H. multicinctus and Meloidogyne spp. were found everywhere with higher but non-dominant densities at lower altitudes; Pratylenchus spp. was restricted to lower altitudes; while H. dihystera and R. reniformis were scattered at both low and high altitudes.