Application of Social Network Analysis in Interlibrary Loan Services
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Approximating Network Centrality Measures Using Node Embedding and Machine Learning
Approximating Network Centrality Measures Using Node Embedding and Machine Learning Matheus R. F. Mendon¸ca,Andr´eM. S. Barreto, and Artur Ziviani ∗† Abstract Extracting information from real-world large networks is a key challenge nowadays. For instance, computing a node centrality may become unfeasible depending on the intended centrality due to its computational cost. One solution is to develop fast methods capable of approximating network centralities. Here, we propose an approach for efficiently approximating node centralities for large networks using Neural Networks and Graph Embedding techniques. Our proposed model, entitled Network Centrality Approximation using Graph Embedding (NCA-GE), uses the adjacency matrix of a graph and a set of features for each node (here, we use only the degree) as input and computes the approximate desired centrality rank for every node. NCA-GE has a time complexity of O(jEj), E being the set of edges of a graph, making it suitable for large networks. NCA-GE also trains pretty fast, requiring only a set of a thousand small synthetic scale-free graphs (ranging from 100 to 1000 nodes each), and it works well for different node centralities, network sizes, and topologies. Finally, we compare our approach to the state-of-the-art method that approximates centrality ranks using the degree and eigenvector centralities as input, where we show that the NCA-GE outperforms the former in a variety of scenarios. 1 Introduction Networks are present in several real-world applications spread among different disciplines, such as biology, mathematics, sociology, and computer science, just to name a few. Therefore, network analysis is a crucial tool for extracting relevant information. -
Closeness Centrality Extended to Unconnected Graphs : the Harmonic Centrality Index
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Infoscience - École polytechnique fédérale de Lausanne ASNA 2009 Zürich Closeness Centrality Extended To Unconnected Graphs : The Harmonic Centrality Index Yannick Rochat1 Institute of Applied Mathematics University of Lausanne, Switzerland [email protected] Abstract Social network analysis is a rapid expanding interdisciplinary field, growing from work of sociologists, physicists, historians, mathematicians, political scientists, etc. Some methods have been commonly accepted in spite of defects, perhaps because of the rareness of synthetic work like (Freeman, 1978; Faust & Wasserman, 1992). In this article, we propose an alternative index of closeness centrality defined on undirected networks. We show that results from its computation on real cases are identical to those of the closeness centrality index, with same computational complex- ity and we give some interpretations. An important property is its use in the case of unconnected networks. 1 Introduction The study of centrality is one of the most popular subject in the analysis of social networks. Determining the role of an individual within a society, its influence or the flows of information on which he can intervene are examples of applications of centrality indices. They are defined at an actor-level and are expected to compare and better understand roles of each individual in the net- work. In addition, a graph-level index called centralization (i.e. how much the index value of the most central node is bigger than the others) is defined for each existing index . Each index provides a way to highlight properties of individuals, depen- dently on its definition. -
Contextual Experience Modifies Functional Connectome Indices of Topological Strength and Organization
bioRxiv preprint doi: https://doi.org/10.1101/2020.06.13.150060; this version posted June 17, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Contextual experience modifies functional connectome indices of topological strength and organization Marjory Pompilus1,2, Luis M. Colon-Perez4, Matteo M. Grudny1, **Marcelo Febo1,2,3 1 Department of Psychiatry, 2Advanced Magnetic Resonance Imaging and Spectroscopy (AMRIS) Facility, 3Evelyn F. and William L. McKnight Brain Institute, College of Medicine, University of Florida, Gainesville, Florida; 4Center for the Neurobiology of Learning and Memory, Department of Neurobiology and Behavior, School of Medicine, University of California, Irvine, California Short title: Experience-dependent functional topology in rat brain **Corresponding author: Marcelo Febo, PhD P.O. Box 100256, Department of Psychiatry, College of Medicine, University of Florida, Gainesville, FL 32611 Email: [email protected]; Phone: +1 (352) 294 4911 Acknowledgments: Supported by National Institute on Drug Abuse grant R03 DA042971, R21 AG065819 and University of Florida College of Medicine Opportunity fund (DRPD-ROF2019) to MF. LMC-P was supported by a McKnight Brain Foundation postdoctoral fellowship and is supported by K25 DA047458 and a young investigator grant from the Brain and Behavior Research Foundation. The contents of this manuscript are solely the responsibility of the authors and do not necessarily represent the official views of the funding agencies. This work was performed in the McKnight Brain Institute at the National High Magnetic Field Laboratory’s AMRIS Facility, which is supported by National Science Foundation Cooperative Agreement No. -
Improving the Betweenness Centrality of a Node by Adding Links
X Improving the Betweenness Centrality of a Node by Adding Links ELISABETTA BERGAMINI, Karlsruhe Institute of Technology, Germany PIERLUIGI CRESCENZI, University of Florence, Italy GIANLORENZO D’ANGELO, Gran Sasso Science Institute (GSSI), Italy HENNING MEYERHENKE, Institute of Computer Science, University of Cologne, Germany LORENZO SEVERINI, ISI Foundation, Italy YLLKA VELAJ, University of Chieti-Pescara, Italy Betweenness is a well-known centrality measure that ranks the nodes according to their participation in the shortest paths of a network. In several scenarios, having a high betweenness can have a positive impact on the node itself. Hence, in this paper we consider the problem of determining how much a vertex can increase its centrality by creating a limited amount of new edges incident to it. In particular, we study the problem of maximizing the betweenness score of a given node – Maximum Betweenness Improvement (MBI) – and that of maximizing the ranking of a given node – Maximum Ranking Improvement (MRI). We show 1 that MBI cannot be approximated in polynomial-time within a factor ¹1 − 2e º and that MRI does not admit any polynomial-time constant factor approximation algorithm, both unless P = NP. We then propose a simple greedy approximation algorithm for MBI with an almost tight approximation ratio and we test its performance on several real-world networks. We experimentally show that our algorithm highly increases both the betweenness score and the ranking of a given node and that it outperforms several competitive baselines. To speed up the computation of our greedy algorithm, we also propose a new dynamic algorithm for updating the betweenness of one node after an edge insertion, which might be of independent interest. -
Navigation of Brain Networks
Navigation of brain networks Caio Seguina,1, Martijn P. van den Heuvelb,c, and Andrew Zaleskya,d aMelbourne Neuropsychiatry Centre, The University of Melbourne and Melbourne Health, Melbourne, VIC 3010, Australia; bDutch Connectome Lab, Department of Complex Trait Genetics, Center for Neurogenomics and Cognitive Research, Amsterdam Neuroscience, VU University Amsterdam, 1081 HV Amsterdam, The Netherlands; cDepartment of Clinical Genetics, Amsterdam Neuroscience, VU University Medical Center, 1081 HV Amsterdam, The Netherlands; and dDepartment of Biomedical Engineering, Melbourne School of Engineering, The University of Melbourne, Melbourne, VIC 3010, Australia Edited by Edward T. Bullmore, University of Cambridge, Cambridge, United Kingdom, and accepted by Editorial Board Member Michael S. Gazzaniga May 7, 2018 (received for review January 24, 2018) Understanding the mechanisms of neural communication in large- Navigation is a network communication strategy that routes scale brain networks remains a major goal in neuroscience. We information based on the distance between network nodes (23). investigated whether navigation is a parsimonious routing model Navigating a network is as simple as progressing to the next node for connectomics. Navigating a network involves progressing to that is closest in distance to a desired target. Navigation is not the next node that is closest in distance to a desired destina- guaranteed to successfully reach a target destination. Moreover, tion. We developed a measure to quantify navigation efficiency targets might be reached using long, inefficient paths. However, and found that connectomes in a range of mammalian species several real-world networks are known to be efficiently naviga- (human, mouse, and macaque) can be successfully navigated with ble, including biological, social, transportation, and technological near-optimal efficiency (>80% of optimal efficiency for typical systems (24–26). -
Communicability Betweenness in Complex Networks
Communicability Betweenness in Complex Networks Ernesto Estrada1,3*, Desmond J. Higham2 and Naomichi Hatano3 1 Institute of Complex Systems at Strathclyde, Department of Physics and Department of Mathematics, University of Strathclyde, Glasgow G1 1XH, UK 2Department of Mathematics, University of Strathclyde, Glasgow G1 1XH, UK 3Institute of Industrial Science, University of Tokyo, Komaba, Meguro, 153-8505, Japan PACS: 89.75.Fb; 89.75.Hc; 87.15.km; 02.10.Ox Keywords: centrality measures, protein-protein interactions, communicability, spectral graph theory, conserved proteins, linear response, Fréchet derivative * Corresponding author. E-mail: [email protected] 1 Abstract Betweenness measures provide quantitative tools to pick out fine details from the massive amount of interaction data that is available from large complex networks. They allow us to study the extent to which a node takes part when information is passed around the network. Nodes with high betweenness may be regarded as key players that have a highly active role. At one extreme, betweenness has been defined by considering information passing only through the shortest paths between pairs of nodes. At the other extreme, an alternative type of betweenness has been defined by considering all possible walks of any length. In this work, we propose a betweenness measure that lies between these two opposing viewpoints. We allow information to pass through all possible routes, but introduce a scaling so that longer walks carry less importance. This new definition shares a similar philosophy to that of communicability for pairs of nodes in a network, which was introduced by Estrada and Hatano (Phys. Rev. E 77 (2008) 036111). -
“A Tie Is a Tie? Gender and Network Positioning in Life Science Inventor Collaboration”
“A Tie is a Tie? Gender and Network Positioning in Life Science Inventor Collaboration” Kjersten Bunker Whittington Reed College 3203 SE Woodstock Blvd Portland, OR 97202 [email protected] (Please note: draft contains figures in color) WORKING PAPER – UNDER REVIEW Highlights Examines men’s and women’s network positioning in innovation collaboration networks Data comprises 30 years of global life science inventing across sectors and organizational forms Women have comparable numbers of ties and network reach; include more women in their networks Women are in fewer strategic positions, and their collaborations are more status-asymmetrical Finds network benefits contingent on gender; men receive higher returns for some types of ties Abstract Collaborative relationships are an important anchor of innovative activity, and rates of collaboration in science are on the rise. This research addresses differences in men’s and women’s collaborative positioning in science, and whether returns from network relationships towards scientists’ future productivity on contingent on gender. Utilizing co-inventor network relations that span thirty years of life science patenting across sectors, geographic locations, and a variety of technological backgrounds, I find persistent gender disparities in involvement in patenting and collaborative positioning across time. Amidst some network similarities, women inventors tend to be in less strategic positions and have greater status-asymmetries between themselves and their co-inventors. Collaborations tend towards gender homophily. In multivariate models that include past and future activity, I find that network benefits are contingent on gender. Men receive greater returns from network positioning for some types of ties, and when collaborating with men. I discuss the implications of these results for innovative growth, as well as for policies that support men’s and women’s career development. -
Node Centrality Measures Are a Poor Substitute for Causal Inference
Node Centrality Measures are a poor substitute for Causal Inference Fabian Dablander and Max Hinne Department of Psychological Methods, University of Amsterdam Abstract Network models have become a valuable tool in making sense of a diverse range of social, biological, and information systems. These models marry graph and probability theory to visualize, understand, and interpret variables and their relations as nodes and edges in a graph. Many applications of network models rely on undirected graphs in which the absence of an edge between two nodes encodes conditional independence between the corresponding variables. To gauge the importance of nodes in such a network, various node centrality measures have become widely used, especially in psychology and neuroscience. It is intuitive to interpret nodes with high centrality measures as being important in a causal sense. Here, using the causal framework based on directed acyclic graphs (DAGs), we show that the relation between causal influence and node centrality measures is not straightforward. In particular, the correlation between causal influence and several node centrality measures is weak, except for eigenvector centrality. Our results provide a cautionary tale: if the underlying real-world system can be modeled as a DAG, but researchers interpret nodes with high centrality as causally important, then this may result in sub-optimal interventions. 1 Introduction In the last two decades, network analysis has become increasingly popular across many disciplines dealing with a diverse range of social, biological, and information systems. From a network per- spective, variables and their interactions are considered nodes and edges in a graph. Throughout this paper, we illustrate the network paradigm with two areas where it has been applied exten- sively: psychology and neuroscience. -
Virtual Identification of Essential Proteins Within the Protein Interaction Network of Yeast
Virtual Identification of Essential Proteins Within the Protein Interaction Network of Yeast Ernesto Estrada Complex Systems Research Group, X-Ray Unit, RIAIDT, University of Santiago de Compostela, Edificio CACTUS, Campus Sur, Santiago de Compostela 15782, Spain. Tel. +34 981 563 100 Ext. 16262 Fax: +34 981 547 077 E-mail: estrada66ahoo.com Topological analysis of large scale protein-protein interaction networks (PINs) is important for understanding the organisational and functional principles of individual proteins. The number of interactions that a protein has in a PIN has been observed to be correlated with its indispensability. Essential proteins generally have more interactions than the non-essential ones. We show here that the lethality associated with removal of a protein from the yeast proteome correlates with different centrality measures of the nodes in the PIN, such as the closeness of a protein to many other proteins, or the number of pairs of proteins which need a specific protein as an intermediary in their communications, or the participation of a protein in different protein clusters in the PIN. These measures are significantly better than random selection in identifying essential proteins in a PIN. Centrality measures based on graph spectral properties of the network, in particular the subgraph centrality, show the best performance in identifying essential proteins in the yeast PIN. Subgraph centrality gives important structural information about the role of individual proteins and permits the selection of possible targets for rational drug discovery through the identification of essential proteins in the PIN. 1 1 Introduction A recent explosion of research papers related to the structure of complex networks has led to important results related to the topological properties of biological networks [1]. -
Social Networking Analysis
Social Networking Analysis Kevin Curran and Niamh Curran Abstract A social network indicates relationships between people or organisations and how they are connected through social familiarities. The concept of social net- work provides a powerful model for social structure, and that a number of important formal methods of social network analysis can be perceived. Social network analysis can be used in studies of kinship structure, social mobility, science citations, con- tacts among members of nonstandard groups, corporate power, international trade exploitation, class structure and many other areas. A social network structure is made up of nodes and ties. There may be few or many nodes in the networks or one or more different types of relations between the nodes. Building a useful understanding of a social network is to sketch a pattern of social relationships, kinships, community structure, interlocking dictatorships and so forth for analysis. 1 Introduction Communication is and has always been vital to the growth and the development of human society. An individual’s attitudes opinions and behaviours can only be characterised in a group or community [5]. Social networking is not an exact science, it can be described as a means of discovering the method in which problems are solved, how individuals achieve goals and how businesses and operations are run. In network theory, social networks are discussed in terms of node and ties (see Fig. 1). Nodes are individual actors and ties are relationships within networks. The social capital of individual nodes/actors can be measured through social network diagrams, as can measures of determination of the usefulness of the network to the actors individually [4]. -
Measures of Centrality
Measures of centrality Measures of centrality Background Centrality Complex Networks measures Degree centrality CSYS/MATH 303, Spring, 2011 Closeness centrality Betweenness Eigenvalue centrality Hubs and Authorities Prof. Peter Dodds References Department of Mathematics & Statistics Center for Complex Systems Vermont Advanced Computing Center University of Vermont Licensed under the Creative Commons Attribution-NonCommercial-ShareAlike 3.0 License. 1 of 28 Measures of Outline centrality Background Centrality measures Degree centrality Closeness centrality Background Betweenness Eigenvalue centrality Hubs and Authorities References Centrality measures Degree centrality Closeness centrality Betweenness Eigenvalue centrality Hubs and Authorities References 2 of 28 Measures of How big is my node? centrality Background Centrality measures I Basic question: how ‘important’ are specific nodes Degree centrality Closeness centrality and edges in a network? Betweenness Eigenvalue centrality I An important node or edge might: Hubs and Authorities 1. handle a relatively large amount of the network’s References traffic (e.g., cars, information); 2. bridge two or more distinct groups (e.g., liason, interpreter); 3. be a source of important ideas, knowledge, or judgments (e.g., supreme court decisions, an employee who ‘knows where everything is’). I So how do we quantify such a slippery concept as importance? I We generate ad hoc, reasonable measures, and examine their utility... 3 of 28 Measures of Centrality centrality Background Centrality measures Degree centrality I One possible reflection of importance is centrality. Closeness centrality Betweenness I Presumption is that nodes or edges that are (in some Eigenvalue centrality Hubs and Authorities sense) in the middle of a network are important for References the network’s function. -
Closeness Centrality in Some Splitting Networks
Computer Science Journal of Moldova, vol.26, no.3(78), 2018 Closeness centrality in some splitting networks Vecdi Ayta¸c Tufan Turacı Abstract A central issue in the analysis of complex networks is the assessment of their robustness and vulnerability. A variety of measures have been proposed in the literature to quantify the robustness of networks, and a number of graph-theoretic param- eters have been used to derive formulas for calculating network reliability. Centrality parameters play an important role in the field of network analysis. Numerous studies have proposed and analyzed several centrality measures. We consider closeness cen- trality which is defined as the total graph-theoretic distance to all other vertices in the graph. In this paper, closeness central- ity of some splitting graphs is calculated, and exact values are obtained. Keywords: Graph theory, network design and communica- tion, complex networks, closeness centrality, splitting graphs. 1 Introduction Most of the communication systems of the real world can be represented as complex networks, in which the nodes are the elementary compo- nents of the system and the links connect a pair of nodes that mutu- ally interact exchanging information. A central issue in the analysis of complex networks is the assessment of their robustness and vulnerabil- ity. One of the major concerns of network analysis is the definition of the concept of centrality. This concept measures the importance of a node’s position in a network. In social, biological, communication, and transportation networks, among others, it is important to know the relative structural prominence of nodes to identify the key elements in the network.