Zebrafish Mutants and TEAD Reporters Reveal Essential Functions for Yap
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MAP4K Family Kinases Act in Parallel to MST1/2 to Activate LATS1/2 in the Hippo Pathway
ARTICLE Received 19 Jun 2015 | Accepted 13 Aug 2015 | Published 5 Oct 2015 DOI: 10.1038/ncomms9357 OPEN MAP4K family kinases act in parallel to MST1/2 to activate LATS1/2 in the Hippo pathway Zhipeng Meng1, Toshiro Moroishi1, Violaine Mottier-Pavie2, Steven W. Plouffe1, Carsten G. Hansen1, Audrey W. Hong1, Hyun Woo Park1, Jung-Soon Mo1, Wenqi Lu1, Shicong Lu1, Fabian Flores1, Fa-Xing Yu3, Georg Halder2 & Kun-Liang Guan1 The Hippo pathway plays a central role in tissue homoeostasis, and its dysregulation contributes to tumorigenesis. Core components of the Hippo pathway include a kinase cascade of MST1/2 and LATS1/2 and the transcription co-activators YAP/TAZ. In response to stimulation, LATS1/2 phosphorylate and inhibit YAP/TAZ, the main effectors of the Hippo pathway. Accumulating evidence suggests that MST1/2 are not required for the regulation of YAP/TAZ. Here we show that deletion of LATS1/2 but not MST1/2 abolishes YAP/TAZ phosphorylation. We have identified MAP4K family members—Drosophila Happyhour homologues MAP4K1/2/3 and Misshapen homologues MAP4K4/6/7—as direct LATS1/2-activating kinases. Combined deletion of MAP4Ks and MST1/2, but neither alone, suppresses phosphorylation of LATS1/2 and YAP/TAZ in response to a wide range of signals. Our results demonstrate that MAP4Ks act in parallel to and are partially redundant with MST1/2 in the regulation of LATS1/2 and YAP/TAZ, and establish MAP4Ks as components of the expanded Hippo pathway. 1 Department of Pharmacology and Moores Cancer Center, University of California San Diego, La Jolla, California 92093, USA. -
Hidden Targets in RAF Signalling Pathways to Block Oncogenic RAS Signalling
G C A T T A C G G C A T genes Review Hidden Targets in RAF Signalling Pathways to Block Oncogenic RAS Signalling Aoife A. Nolan 1, Nourhan K. Aboud 1, Walter Kolch 1,2,* and David Matallanas 1,* 1 Systems Biology Ireland, School of Medicine, University College Dublin, Belfield, Dublin 4, Ireland; [email protected] (A.A.N.); [email protected] (N.K.A.) 2 Conway Institute of Biomolecular & Biomedical Research, University College Dublin, Belfield, Dublin 4, Ireland * Correspondence: [email protected] (W.K.); [email protected] (D.M.) Abstract: Oncogenic RAS (Rat sarcoma) mutations drive more than half of human cancers, and RAS inhibition is the holy grail of oncology. Thirty years of relentless efforts and harsh disappointments have taught us about the intricacies of oncogenic RAS signalling that allow us to now get a pharma- cological grip on this elusive protein. The inhibition of effector pathways, such as the RAF-MEK-ERK pathway, has largely proven disappointing. Thus far, most of these efforts were aimed at blocking the activation of ERK. Here, we discuss RAF-dependent pathways that are regulated through RAF functions independent of catalytic activity and their potential role as targets to block oncogenic RAS signalling. We focus on the now well documented roles of RAF kinase-independent functions in apoptosis, cell cycle progression and cell migration. Keywords: RAF kinase-independent; RAS; MST2; ASK; PLK; RHO-α; apoptosis; cell cycle; cancer therapy Citation: Nolan, A.A.; Aboud, N.K.; Kolch, W.; Matallanas, D. Hidden Targets in RAF Signalling Pathways to Block Oncogenic RAS Signalling. -
Phospho-RAF1(S43) Antibody Peptide Affinity Purified Rabbit Polyclonal Antibody (Pab) Catalog # Ap3332a
9765 Clairemont Mesa Blvd, Suite C San Diego, CA 92124 Tel: 858.875.1900 Fax: 858.622.0609 Phospho-RAF1(S43) Antibody Peptide Affinity Purified Rabbit Polyclonal Antibody (Pab) Catalog # AP3332a Specification Phospho-RAF1(S43) Antibody - Product Information Application DB,E Primary Accession P04049 Other Accession P11345, Q99N57, A7E3S4 Reactivity Human Predicted Bovine, Mouse, Rat Host Rabbit Clonality Polyclonal Isotype Rabbit Ig Clone Names RB11127 Calculated MW 73052 Phospho-RAF1(S43) Antibody - Additional Information Gene ID 5894 Dot blot analysis of Phospho-RAF1-S43 Phospho-specific Pab (Cat.AP3332a) on Other Names nitrocellulose membrane. 50ng of RAF proto-oncogene serine/threonine-protein Phospho-peptide or Non Phospho-peptide per kinase, Proto-oncogene c-RAF, cRaf, Raf-1, dot were adsorbed. Antobodies working RAF1, RAF concentration was 0.5ug per ml. Target/Specificity This RAF1 Antibody is generated from rabbits Phospho-RAF1(S43) Antibody - immunized with a KLH conjugated synthetic phosphopeptide corresponding to amino acid Background residues surrounding S43 of human RAF1. Raf-1 is a MAP kinase kinase kinase (MAP3K) Dilution which functions downstream of the Ras family of DB~~1:500 membrane associated GTPases to which it binds directly. Once activated Raf-1 can phosphorylate Format to activate the dual specificity protein kinases Purified polyclonal antibody supplied in PBS MEK1 and MEK2 which in turn phosphorylate to with 0.09% (W/V) sodium azide. This antibody activate the serine/threonine specific protein is purified through a protein A column, kinases ERK1 and ERK2. Activated ERKs are followed by peptide affinity purification. pleiotropic effectors of cell physiology and play an important role in the control of gene Storage expression involved in the cell division cycle, Maintain refrigerated at 2-8°C for up to 6 apoptosis, cell differentiation and cell migration. -
Machine-Learning and Chemicogenomics Approach Defi Nes and Predicts Cross-Talk of Hippo and MAPK Pathways
Published OnlineFirst November 18, 2020; DOI: 10.1158/2159-8290.CD-20-0706 RESEARCH ARTICLE Machine -Learning and Chemicogenomics Approach Defi nes and Predicts Cross-Talk of Hippo and MAPK Pathways Trang H. Pham 1 , Thijs J. Hagenbeek 1 , Ho-June Lee 1 , Jason Li 2 , Christopher M. Rose 3 , Eva Lin 1 , Mamie Yu 1 , Scott E. Martin1 , Robert Piskol 2 , Jennifer A. Lacap 4 , Deepak Sampath 4 , Victoria C. Pham 3 , Zora Modrusan 5 , Jennie R. Lill3 , Christiaan Klijn 2 , Shiva Malek 1 , Matthew T. Chang 2 , and Anwesha Dey 1 ABSTRACT Hippo pathway dysregulation occurs in multiple cancers through genetic and non- genetic alterations, resulting in translocation of YAP to the nucleus and activation of the TEAD family of transcription factors. Unlike other oncogenic pathways such as RAS, defi ning tumors that are Hippo pathway–dependent is far more complex due to the lack of hotspot genetic alterations. Here, we developed a machine-learning framework to identify a robust, cancer type–agnostic gene expression signature to quantitate Hippo pathway activity and cross-talk as well as predict YAP/TEAD dependency across cancers. Further, through chemical genetic interaction screens and multiomics analyses, we discover a direct interaction between MAPK signaling and TEAD stability such that knockdown of YAP combined with MEK inhibition results in robust inhibition of tumor cell growth in Hippo dysregulated tumors. This multifaceted approach underscores how computational models combined with experimental studies can inform precision medicine approaches including predictive diagnostics and combination strategies. SIGNIFICANCE: An integrated chemicogenomics strategy was developed to identify a lineage- independent signature for the Hippo pathway in cancers. -
Downloaded from NCBI Website [31]
Int. J. Mol. Sci. 2014, 15, 21788-21802; doi:10.3390/ijms151221788 OPEN ACCESS International Journal of Molecular Sciences ISSN 1422-0067 www.mdpi.com/journal/ijms Article Interactome Mapping Reveals Important Pathways in Skeletal Muscle Development of Pigs Jianhua Cao, Tinghua Huang, Xinyun Li and Shuhong Zhao * Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction of Ministry of Education of China, College of Animal Science and Technology, Huazhong Agricultural University, 1 Shizishan St., Wuhan 430070, China; E-Mails: [email protected] (J.C.); [email protected] (T.H.); [email protected] (X.L.) * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +86-27-8738-7480; Fax: +86-27-8728-0408. External Editor: Mark L. Richter Received: 15 July 2014; in revised form: 19 October 2014 / Accepted: 6 November 2014 / Published: 26 November 2014 Abstract: The regulatory relationship and connectivity among genes involved in myogenesis and hypertrophy of skeletal muscle in pigs still remain large challenges. Presentation of gene interactions is a potential way to understand the mechanisms of developmental events in skeletal muscle. In this study, genome-wide transcripts and miRNA profiling was determined for Landrace pigs at four time points using microarray chips. A comprehensive method integrating gene ontology annotation and interactome network mapping was conducted to analyze the biological patterns and interaction modules of muscle development events based on differentially expressed genes and miRNAs. Our results showed that in total 484 genes and 34 miRNAs were detected for the duration from embryonic stage to adult in pigs, which composed two linear expression patterns with consensus changes. -
A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
Inhibition of Β-Catenin Signaling Respecifies Anterior-Like Endothelium Into Beating Human Cardiomyocytes Nathan J
© 2015. Published by The Company of Biologists Ltd | Development (2015) 142, 3198-3209 doi:10.1242/dev.117010 RESEARCH ARTICLE STEM CELLS AND REGENERATION Inhibition of β-catenin signaling respecifies anterior-like endothelium into beating human cardiomyocytes Nathan J. Palpant1,2,3,*, Lil Pabon1,2,3,*, Meredith Roberts2,3,4, Brandon Hadland5,6, Daniel Jones7, Christina Jones3,8,9, Randall T. Moon3,8,9, Walter L. Ruzzo7, Irwin Bernstein5,6, Ying Zheng2,3,4 and Charles E. Murry1,2,3,4,10,‡ ABSTRACT lineages. Anterior mesoderm (mid-streak) gives rise to cardiac and endocardial endothelium, whereas posterior mesoderm (posterior During vertebrate development, mesodermal fate choices are regulated streak) gives rise to the blood-forming endothelium and vasculature by interactions between morphogens such as activin/nodal, BMPs and (Murry and Keller, 2008). Wnt/β-catenin that define anterior-posterior patterning and specify Well-described anterior-posterior morphogen gradients, downstream derivatives including cardiomyocyte, endothelial and including those of activin A/nodal and BMP4, are thought to hematopoietic cells. We used human embryonic stem cells to explore pattern mesoderm subtypes (Nostro et al., 2008; Sumi et al., 2008; how these pathways control mesodermal fate choices in vitro. Varying Kattman et al., 2011). Such gradients are proposed to specify doses of activin A and BMP4 to mimic cytokine gradient polarization anterior mesodermal fates like cardiomyocytes versus posterior in the anterior-posterior axis of the embryo led to differential activity mesodermal fates like blood. Remarkably, a recent study showed of Wnt/β-catenin signaling and specified distinct anterior-like (high activin/ that ectopic induction of a nodal/BMP gradient in zebrafish embryos low BMP) and posterior-like (low activin/high BMP) mesodermal was sufficient to create an entirely new embryonic axis that could populations. -
Transparent Transgenic in Vivo Zebrafish Model To
cells Protocol Development of Tg(UAS:SEC-Hsa.ANXA5-YFP,myl7:RFP); Casper(roy−/−,nacre−/−) Transparent Transgenic In Vivo Zebrafish Model to Study the Cardiomyocyte Function Surendra K. Rajpurohit 1,* , Aaron Gopal 2, May Ye Mon 1 , Nikhil G. Patel 3 and Vishal Arora 2,* 1 Georgia Cancer Center, Medical College of Georgia, Augusta University, Augusta, GA 30912, USA; [email protected] 2 Department of Medicine, Division of Cardiology, Medical College of Georgia, Augusta University, Augusta, GA 30912, USA; [email protected] 3 Department of Pathology, Medical College of Georgia, Augusta University, Augusta, GA 30912, USA; [email protected] * Correspondence: [email protected] (S.K.R.); [email protected] (V.A.) Abstract: The zebrafish provided an excellent platform to study the genetic and molecular approach of cellular phenotype-based cardiac research. We designed a novel protocol to develop the transparent transgenic zebrafish model to study annexin-5 activity in the cardiovascular function by generating homozygous transparent skin Casper(roy−/−,nacre−/−); myl7:RFP; annexin-5:YFP transgenic ze- brafish. The skin pigmentation background of any vertebrate model organism is a major obstruction for in vivo confocal imaging to study the transgenic cellular phenotype-based study. By developing Citation: Rajpurohit, S.K.; Gopal, A.; Casper(roy−/−,nacre−/−); myl7; annexin-5 transparent transgenic zebrafish strain, we established Mon, M.Y.; Patel, N.G.; Arora, V. time-lapse in vivo confocal microscopy to study cellular phenotype/pathologies of cardiomyocytes Development of Tg(UAS:SEC- over time to quantify changes in cardiomyocyte morphology and function over time, comparing Hsa.ANXA5-YFP,myl7:RFP); control and cardiac injury and cardio-oncology. -
Cardiomyopathy
JACC: BASIC TO TRANSLATIONAL SCIENCE VOL.1,NO.5,2016 ª 2016 THE AUTHORS. PUBLISHED BY ELSEVIER ON BEHALF OF THE AMERICAN ISSN 2452-302X COLLEGE OF CARDIOLOGY FOUNDATION. THIS IS AN OPEN ACCESS ARTICLE UNDER http://dx.doi.org/10.1016/j.jacbts.2016.05.004 THE CC BY-NC-ND LICENSE (http://creativecommons.org/licenses/by-nc-nd/4.0/). PRE-CLINICAL RESEARCH FLNC Gene Splice Mutations Cause Dilated Cardiomyopathy a a b,c a d Rene L. Begay, BS, Charles A. Tharp, MD, August Martin, Sharon L. Graw, PHD, Gianfranco Sinagra, MD, e a a b,c,f b,c Daniela Miani, MD, Mary E. Sweet, BA, Dobromir B. Slavov, PHD, Neil Stafford, MD, Molly J. Zeller, b,c a d g g Rasha Alnefaie, Teisha J. Rowland, PHD, Francesca Brun, MD, Kenneth L. Jones, PHD, Katherine Gowan, a b,c a Luisa Mestroni, MD, Deborah M. Garrity, PHD, Matthew R.G. Taylor, MD, PHD VISUAL ABSTRACT HIGHLIGHTS Deoxyribonucleic acid obtained from 2 large DCM families was studied using whole-exome sequencing and cose- gregation analysis resulting in the iden- tification of a novel disease gene, FLNC. The2families,fromthesameItalian region, harbored the same FLNC splice- site mutation (FLNC c.7251D1G>A). A third U.S. family was then identified with a novel FLNC splice-site mutation (FLNC c.5669-1delG) that leads to haploinsufficiency as shown by the FLNC Western blot analysis of the heart muscle. The FLNC ortholog flncb morpholino was injected into zebrafish embryos, and when flncb was knocked down caused a cardiac dysfunction phenotype. -
The Legionella Kinase Legk7 Exploits the Hippo Pathway Scaffold Protein MOB1A for Allostery and Substrate Phosphorylation
The Legionella kinase LegK7 exploits the Hippo pathway scaffold protein MOB1A for allostery and substrate phosphorylation Pei-Chung Leea,b,1, Ksenia Beyrakhovac,1, Caishuang Xuc, Michal T. Bonieckic, Mitchell H. Leea, Chisom J. Onub, Andrey M. Grishinc, Matthias P. Machnera,2, and Miroslaw Cyglerc,2 aDivision of Molecular and Cellular Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, NIH, Bethesda, MD 20892; bDepartment of Biological Sciences, College of Liberal Arts and Sciences, Wayne State University, Detroit, MI 48202; and cDepartment of Biochemistry, University of Saskatchewan, Saskatoon, SK S7N5E5, Canada Edited by Ralph R. Isberg, Tufts University School of Medicine, Boston, MA, and approved May 1, 2020 (received for review January 12, 2020) During infection, the bacterial pathogen Legionella pneumophila Active LATS1/2 phosphorylate the cotranscriptional regulator manipulates a variety of host cell signaling pathways, including YAP1 (yes-associated protein 1) and its homolog TAZ (tran- the Hippo pathway which controls cell proliferation and differen- scriptional coactivator with PDZ-binding motif). Phosphorylated tiation in eukaryotes. Our previous studies revealed that L. pneu- YAP1 and TAZ are prevented from entering the nucleus by being mophila encodes the effector kinase LegK7 which phosphorylates either sequestered in the cytosol through binding to 14-3-3 pro- MOB1A, a highly conserved scaffold protein of the Hippo path- teins or targeted for proteolytic degradation (6, 8). Consequently, way. Here, we show that MOB1A, in addition to being a substrate the main outcome of signal transduction along the Hippo pathway of LegK7, also functions as an allosteric activator of its kinase is changes in gene expression (6). -
Structural Basis for Autoinhibition and Its Relief of MOB1 in the Hippo
www.nature.com/scientificreports OPEN Structural basis for autoinhibition and its relief of MOB1 in the Hippo pathway Received: 10 February 2016 Sun-Yong Kim, Yuka Tachioka, Tomoyuki Mori & Toshio Hakoshima Accepted: 03 June 2016 MOB1 protein is a key regulator of large tumor suppressor 1/2 (LATS1/2) kinases in the Hippo pathway. Published: 23 June 2016 MOB1 is present in an autoinhibited form and is activated by MST1/2-mediated phosphorylation, although the precise mechanisms responsible for autoinhibition and activation are unknown due to lack of an autoinhibited MOB1 structure. Here, we report on the crystal structure of full-length MOB1B in the autoinhibited form and a complex between the MOB1B core domain and the N-terminal regulation (NTR) domain of LATS1. The structure of full-length MOB1B shows that the N-terminal extension forms a short β-strand, the SN strand, followed by a long conformationally flexible positively-charged linker and α-helix, the Switch helix, which blocks the LATS1 binding surface of MOB1B. The Switch helix is stabilized by β-sheet formation of the SN strand with the S2 strand of the MOB1 core domain. Phosphorylation of Thr12 and Thr35 residues structurally accelerates dissociation of the Switch helix from the LATS1-binding surface by the “pull-the-string” mechanism, thereby enabling LATS1 binding. The Hippo pathway is a key signaling cascade that ensures organ size and normal tissue growth by coordinating cell proliferation and differentiation, and has now been recognized as an essential tumor suppressor cascade1–6. In mammals, the core pathway components comprise two Ser/Thr protein kinases, mammalian Ste20-like 1 and 2 (MST1/2) kinases, members of the Ste20 group in the germinal center kinase II (GCK-II) subgroup, and large tumor suppressor 1 and 2 (LATS1/2) kinases, members of the AGC protein kinase family, in addition to transcriptional co-activator Yes-associated protein (YAP) and transcriptional co-activator with PDZ-binding motif (TAZ). -
MAPK and Hippo Signaling Pathways Crosstalk Via the RAF-1/MST-2 Interaction in Malignant Melanoma
ONCOLOGY REPORTS 38: 1199-1205, 2017 MAPK and Hippo signaling pathways crosstalk via the RAF-1/MST-2 interaction in malignant melanoma RUizheng Feng1, JUnSheng gong1, LinA WU2, LEI WANG3, BAoLin zhAng1, GANG LIANG2, hUixiA zheng2 and hong xiAo2 Departments of 1Plastic Surgery and 2Pathology, The First hospital of Shanxi Medical University, Taiyuan, Shanxi 030024; 3Department of Gerontology, Shanxi Dayi Hospital, Taiyuan, Shanxi 030000, P.R. China Received november 11, 2016; Accepted June 14, 2017 DOI: 10.3892/or.2017.5774 Abstract. The aim of the present study was to expound on sible for over 80% of all skin cancer-related deaths. In 2012, the interactions between the mitogen-activated protein kinase 232,000 new cases of melanoma and 55,000 melanoma-related (MAPK) and Hippo pathway members, and to further eluci- deaths were reported worldwide (1). Moreover, the incidence date the molecular mechanisms of melanoma tumorigenesis. of melanoma is increasing at a rate faster than that of any other Four melanoma cell lines (C32, HS695T, SK-MEL-28 and solid tumor, and is thought to be the highest in white-skinned A375) were used in the present study. Western blotting was people living at low latitudes (2). In its advanced stages, mela- used to assess the expression levels of the MAPK and Hippo noma is highly malignant, owing to its potential for distant pathway effector proteins: rapidly accelerated fibrosarcoma-1 metastasis (3), and an extremely low 5-year survival rate proto-oncogene, serine/threonine kinase (RAF-1); serine/thre- (5-16%) (4). Unfortunately, melanoma is refractory to conven- onine kinase 3 (STK3; also known as MST-2); yes-associated tional chemotherapeutics, thus, the treatment options for protein (YAP); and tafazzin (TAZ).