The Evolution, Metabolism and Functions of the Apicoplast
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Molecular Data and the Evolutionary History of Dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Un
Molecular data and the evolutionary history of dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Universitat Heidelberg, 1993 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES Department of Botany We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA November 2003 © Juan Fernando Saldarriaga Echavarria, 2003 ABSTRACT New sequences of ribosomal and protein genes were combined with available morphological and paleontological data to produce a phylogenetic framework for dinoflagellates. The evolutionary history of some of the major morphological features of the group was then investigated in the light of that framework. Phylogenetic trees of dinoflagellates based on the small subunit ribosomal RNA gene (SSU) are generally poorly resolved but include many well- supported clades, and while combined analyses of SSU and LSU (large subunit ribosomal RNA) improve the support for several nodes, they are still generally unsatisfactory. Protein-gene based trees lack the degree of species representation necessary for meaningful in-group phylogenetic analyses, but do provide important insights to the phylogenetic position of dinoflagellates as a whole and on the identity of their close relatives. Molecular data agree with paleontology in suggesting an early evolutionary radiation of the group, but whereas paleontological data include only taxa with fossilizable cysts, the new data examined here establish that this radiation event included all dinokaryotic lineages, including athecate forms. Plastids were lost and replaced many times in dinoflagellates, a situation entirely unique for this group. Histones could well have been lost earlier in the lineage than previously assumed. -
Norrisiella Sphaerica Gen
Norrisiella sphaerica gen. et sp. nov., a new coccoid chlorarachniophyte from Baja California, Mexico 著者 Ota Shuhei, Ueda Kunihiko, Ishida Ken-ichiro journal or Journal of Plant Research publication title volume 120 number 6 page range 661-670 year 2007-11-01 URL http://hdl.handle.net/2297/7674 doi: 10.1007/s10265-007-0115-y Norrisiella sphaerica gen. et sp. nov., a new coccoid chlorarachniophyte from Baja California, Mexico Shuhei Ota1, 2, Kunihiko Ueda1 and Ken-ichiro Ishida2 1Division of Life Sciences, Graduate School of Natural Science and Technology, Kanazawa University, Kakuma, Kanazawa 920-1192, Japan 2Graduate School of Life and Environmental Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba 305-8572, Japan Running title: Norrisiella sphaerica gen. et sp. nov. Correspondence: Shuhei Ota Laboratory of Plant Systematics and Phylogeny (D508) Institute of Biological Sciences Graduate School of Life and Environmental Sciences University of Tsukuba, 1-1-1, Tennodai, Tsukuba 305-8572, Japan Tel/Fax: +81 (29) 853-7267 Fax: +81 (29) 853-4533 e-mail: [email protected] 1/29 Abstract A new chlorarachniophyte, Norrisiella sphaerica S. Ota et K. Ishida gen. et sp. nov., is described from the coast of Baja California, Mexico. We examined its morphology, ultrastructure and life cycle in detail, using light microscopy, transmission electron microscopy and time-lapse videomicroscopy. We found that this chlorarachniophyte possessed the following characteristics: (i) vegetative cells were coccoid and possessed a cell wall, (ii) a pyrenoid was slightly invaded by plate-like periplastidial compartment from the tip of the pyrenoid, (iii) a nucleomorph was located near the pyrenoid base in the periplastidial compartment, (iv) cells reproduced vegetatively via autospores, and (v) a flagellate stage was present in the life cycle. -
Contrasts in the Prevalence of Avian Malaria in Shorebird Species
University of Groningen Disease-limited distributions? Contrasts in the prevalence of avian malaria in shorebird species using marine and freshwater habitats Mendes, L; Piersma, T; Lecoq, M; Spaans, B; Ricklefs, RE; Ricklefs, Robert E. Published in: Oikos DOI: 10.1111/j.0030-1299.2005.13509.x IMPORTANT NOTE: You are advised to consult the publisher's version (publisher's PDF) if you wish to cite from it. Please check the document version below. Document Version Publisher's PDF, also known as Version of record Publication date: 2005 Link to publication in University of Groningen/UMCG research database Citation for published version (APA): Mendes, L., Piersma, T., Lecoq, M., Spaans, B., Ricklefs, RE., & Ricklefs, R. E. (2005). Disease-limited distributions? Contrasts in the prevalence of avian malaria in shorebird species using marine and freshwater habitats. Oikos, 109(2), 396-404. https://doi.org/10.1111/j.0030-1299.2005.13509.x Copyright Other than for strictly personal use, it is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), unless the work is under an open content license (like Creative Commons). Take-down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Downloaded from the University of Groningen/UMCG research database (Pure): http://www.rug.nl/research/portal. For technical reasons the number of authors shown on this cover page is limited to 10 maximum. Download date: 27-09-2021 OIKOS 109: 396Á/404, 2005 Disease-limited distributions? Contrasts in the prevalence of avian malaria in shorebird species using marine and freshwater habitats Luisa Mendes, Theunis Piersma, Miguel Lecoq, Bernard Spaans and Robert E. -
23.3 Groups of Protists
Chapter 23 | Protists 639 cysts that are a protective, resting stage. Depending on habitat of the species, the cysts may be particularly resistant to temperature extremes, desiccation, or low pH. This strategy allows certain protists to “wait out” stressors until their environment becomes more favorable for survival or until they are carried (such as by wind, water, or transport on a larger organism) to a different environment, because cysts exhibit virtually no cellular metabolism. Protist life cycles range from simple to extremely elaborate. Certain parasitic protists have complicated life cycles and must infect different host species at different developmental stages to complete their life cycle. Some protists are unicellular in the haploid form and multicellular in the diploid form, a strategy employed by animals. Other protists have multicellular stages in both haploid and diploid forms, a strategy called alternation of generations, analogous to that used by plants. Habitats Nearly all protists exist in some type of aquatic environment, including freshwater and marine environments, damp soil, and even snow. Several protist species are parasites that infect animals or plants. A few protist species live on dead organisms or their wastes, and contribute to their decay. 23.3 | Groups of Protists By the end of this section, you will be able to do the following: • Describe representative protist organisms from each of the six presently recognized supergroups of eukaryotes • Identify the evolutionary relationships of plants, animals, and fungi within the six presently recognized supergroups of eukaryotes • Identify defining features of protists in each of the six supergroups of eukaryotes. In the span of several decades, the Kingdom Protista has been disassembled because sequence analyses have revealed new genetic (and therefore evolutionary) relationships among these eukaryotes. -
Gymnochlora Dimorpha Sp. Nov., a Chlorarachniophyte with Unique Daughter Cell Behaviour
Phycologia (2011) Volume 50 (3), 317–326 Published 3 May 2011 Gymnochlora dimorpha sp. nov., a chlorarachniophyte with unique daughter cell behaviour 1,2 3 1 SHUHEI OTA *{,ASTUKO KUDO AND KEN-ICHIRO ISHIDA 1Institute of Biological Sciences, Graduate School of Life and Environmental Sciences, University of Tsukuba, 1-1-1, Tennodai, Tsukuba 305-8572, Japan 2Station Biologique de Roscoff, Universite´ Pierre et Marie Curie (Paris 06), CNRS and UMR 7144, Place Georges Tessier, 29682 Roscoff, France 3The College of Biological Sciences, University of Tsukuba, 1-1-1, Tennodai, Tsukuba 305-8572, Japan OTA S., KUDO A. AND ISHIDA K.-I. 2011. Gymnochlora dimorpha sp. nov., a chlorarachniophyte with unique daughter cell behaviour. Phycologia 50: 317–326. DOI: 10.2216/09-102.1 A new chlorarachniophyte species, Gymnochlora dimorpha sp. nov., was described. This new species was isolated from an enrichment preculture of Padina sp. collected from a subtidal coral reef zone in Republic of Palau. The new strain, P314, was characterized by light and electron microscopy in the present study. Under the culture conditions used here, the amoeboid stage was dominant. Two types of amoeboid cells were found in the cultures: motile and flattened nonmotile (sessile) cells. The motile cells typically multiplied via binary cell division. The sessile cells were always present in the cultures, but they never became dominant under the culture conditions. Time-lapse video microscopic observations revealed that after cell division of a sessile cell, one daughter cell became motile, while the other remained sessile. According to ultrastructural characteristics of the pyrenoids and nucleomorphs, the new chlorarachniophyte strain belongs to the genus Gymnochlora. -
VII EUROPEAN CONGRESS of PROTISTOLOGY in Partnership with the INTERNATIONAL SOCIETY of PROTISTOLOGISTS (VII ECOP - ISOP Joint Meeting)
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/283484592 FINAL PROGRAMME AND ABSTRACTS BOOK - VII EUROPEAN CONGRESS OF PROTISTOLOGY in partnership with THE INTERNATIONAL SOCIETY OF PROTISTOLOGISTS (VII ECOP - ISOP Joint Meeting) Conference Paper · September 2015 CITATIONS READS 0 620 1 author: Aurelio Serrano Institute of Plant Biochemistry and Photosynthesis, Joint Center CSIC-Univ. of Seville, Spain 157 PUBLICATIONS 1,824 CITATIONS SEE PROFILE Some of the authors of this publication are also working on these related projects: Use Tetrahymena as a model stress study View project Characterization of true-branching cyanobacteria from geothermal sites and hot springs of Costa Rica View project All content following this page was uploaded by Aurelio Serrano on 04 November 2015. The user has requested enhancement of the downloaded file. VII ECOP - ISOP Joint Meeting / 1 Content VII ECOP - ISOP Joint Meeting ORGANIZING COMMITTEES / 3 WELCOME ADDRESS / 4 CONGRESS USEFUL / 5 INFORMATION SOCIAL PROGRAMME / 12 CITY OF SEVILLE / 14 PROGRAMME OVERVIEW / 18 CONGRESS PROGRAMME / 19 Opening Ceremony / 19 Plenary Lectures / 19 Symposia and Workshops / 20 Special Sessions - Oral Presentations / 35 by PhD Students and Young Postdocts General Oral Sessions / 37 Poster Sessions / 42 ABSTRACTS / 57 Plenary Lectures / 57 Oral Presentations / 66 Posters / 231 AUTHOR INDEX / 423 ACKNOWLEDGMENTS-CREDITS / 429 President of the Organizing Committee Secretary of the Organizing Committee Dr. Aurelio Serrano -
Toxoplasma Gondii Sequesters Centromeres to a Specific Nuclear
Toxoplasma gondii sequesters centromeres to a specific nuclear region throughout the cell cycle Carrie F. Brooksa, Maria E. Franciab, Mathieu Gissotc,d,1, Matthew M. Crokenc,d, Kami Kimc,d,2, and Boris Striepena,b,2 aCenter for Tropical and Emerging Global Diseases and bDepartment of Cellular Biology, University of Georgia, Athens, GA 30602; and Departments of cMedicine and dMicrobiology and Immunology, Albert Einstein College of Medicine, Bronx, NY 10461 Edited by Thomas E. Wellems, National Institutes of Health, Bethesda, MD, and approved January 20, 2011 (received for review May 24, 2010) Members of the eukaryotic phylum Apicomplexa are the cause of testine (6). The molecular mechanisms that regulate apicomplexan important human diseases including malaria, toxoplasmosis, and cell division and allow this remarkable flexibility of the cell and cryptosporidiosis. These obligate intracellular parasites produce nuclear division cycle remain poorly understood (7). An important new invasive stages through a complex budding process. The bud- unsolved question is how apicomplexan daughter cells emerge ding cycle is remarkably flexible and can produce varied numbers of with the complete set of chromosomes (∼10 depending on species) progeny to adapt to different host-cell niches. How this complex after passing through multinucleated and polyploid stages. In process is coordinated remains poorly understood. Using Toxo- Sarcocystis neurona the mitotic spindle persists throughout the plasma gondii as a genetic model, we show that a key element to cell cycle, and small monopolar spindles housed in a specialized this coordination is the centrocone, a unique elaboration of the nu- elaboration of the nuclear envelope, the centrocone, are evident clear envelope that houses the mitotic spindle. -
The Fine Structure of the Exoerythrocytic Stages of Plasmodium
THE FINE STRUCTURE OF THE EXOERYTHROCYTIC STAGES OF PLASMODIUM FALLAX PETER K. HEPLER, CLAY G. HUFF, and HELMUTH SPRINZ From the Department of Experimental Pathology, Walter Reed Army Institute of Research, Washington, D. C., and the Department of Parasitology, Naval Medical Research Institute, Bethesda, Maryland. Dr. Hepler's present address is the Biological Laboratories, Harvard University, Cambridge. ABSTRACT The fine structure of the exoerythrocytic cycle of an avian malarial parasite, Plasmodium fallax, has been analyzed using preparations grown in a tissue culture system derived from embryonic turkey brain cells which were fixed in glutaraldehyde-OsO4. The mature mero- zoite, an elongated cell 3- to 4-/~ long and l- to 2-# wide, is ensheathed in a complex double- layered pellicle. The anterior end consists of a conoid, from which emanate two lobed paired organelles and several closely associated dense bodies. A nucleus is situated in the mid portion of the cell, while a single mitochondrion wrapped around a spherical body is found in the posterior end. On the pellicle of the merozoite near the nucleus a cytostomal cavity, 80 to 100 m/~ in diameter, is located. Based on changes in fine structure, the subse- quent sequence of development is divided into three phases: first, the dedifferentiation phase, in which the merozoite loses many complex structures, i.e. the conoid, paired organelles, dense bodies, spherical body, and the thick inner layers of the pellicle, and transforms into a trophozoite; second, the growth phase, which consists of many nuclear divisions as well as parallel increases in mitochondria, endoplasmic reticulum, and ribosomes; and third, the redifferentiation and cytoplasmic schizogony phase, in which the specialized organelles reappear as the new merozoites bud off from the mother schizont. -
The Sub-Genera of Avian Plasmodium Landau I.*, Chavatte J.M.*, Peters W.** & Chabaud A.*
Landau (MEP) 28/01/10 10:07 Page 3 Article available at http://www.parasite-journal.org or http://dx.doi.org/10.1051/parasite/2010171003 THE SUB-GENERA OF AVIAN PLASMODIUM LANDAU I.*, CHAVATTE J.M.*, PETERS W.** & CHABAUD A.* Summary: Résumé : LES SOUS-GENRES DE PLASMODIUM AVIAIRE The study of the morphology of a species of Plasmodium is difficult La morphologie d’un Plasmodium est difficile à étudier car on because these organisms have relatively few characters. The size dispose de peu de caractères. La taille d’un schizonte, facile à of the schizont, for example, which is easy to assess is important apprécier, est significative au niveau spécifique mais n’a pas at the specific level but is not always of great phylogenetic toujours une grande valeur phylogénique. Le métabolisme du significance. Factors reflecting the parasite’s metabolism provide parasite fournit des éléments plus importants. Ainsi, la situation du more important evidence. Thus the position of the parasite within parasite à l’intérieur de l’hématie (accolé au noyau, ou à la the host red cell (attachment to the host nucleus or its membrane, membrane, au sommet ou le long du noyau) se révèle très at one end or aligned with it) has been shown to be constant for constant chez chaque espèce. Un autre caractère, de valeur a given species. Another structure of essential significance that is essentielle, trop souvent négligé, est le globule le plus souvent often ignored is a globule, usually refringent in nature, that was réfringent, décrit pour la première fois chez Plasmodium vaughani first decribed in Plasmodium vaughani Novy & MacNeal, 1904 Novy & MacNeal, 1904 et que nous considérons comme and that we consider to be characteristic of the sub-genus caractéristique du sous-genre Novyella. -
Single Cell Transcriptomics, Mega-Phylogeny and the Genetic Basis Of
bioRxiv preprint doi: https://doi.org/10.1101/064030; this version posted July 15, 2016. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Single cell transcriptomics, mega-phylogeny and the genetic basis of 2 morphological innovations in Rhizaria 3 4 Anders K. Krabberød1, Russell J. S. Orr1, Jon Bråte1, Tom Kristensen1, Kjell R. Bjørklund2 & Kamran 5 ShalChian-Tabrizi1* 6 7 1Department of BiosCienCes, Centre for Integrative MiCrobial Evolution and Centre for EpigenetiCs, 8 Development and Evolution, University of Oslo, Norway 9 2Natural History Museum, Department of ResearCh and ColleCtions University of Oslo, Norway 10 11 *Corresponding author: 12 Kamran ShalChian-Tabrizi 13 [email protected] 14 Mobile: + 47 41045328 15 16 17 Keywords: Cytoskeleton, phylogeny, protists, Radiolaria, Rhizaria, SAR, single-cell, transCriptomiCs 1 bioRxiv preprint doi: https://doi.org/10.1101/064030; this version posted July 15, 2016. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 18 Abstract 19 The innovation of the eukaryote Cytoskeleton enabled phagoCytosis, intracellular transport and 20 Cytokinesis, and is responsible for diverse eukaryotiC morphologies. Still, the relationship between 21 phenotypiC innovations in the Cytoskeleton and their underlying genotype is poorly understood. 22 To explore the genetiC meChanism of morphologiCal evolution of the eukaryotiC Cytoskeleton we 23 provide the first single Cell transCriptomes from unCultivable, free-living uniCellular eukaryotes: the 24 radiolarian speCies Lithomelissa setosa and Sticholonche zanclea. -
Exploring the Roles of Phosphoinositides in the Biology of the Malaria Parasite Plasmodium Falciparum
Exploring the roles of phosphoinositides in the biology of the malaria parasite Plasmodium falciparum Thèse Zeinab Ebrahimzadeh Doctorat en microbiologie-immunologie Philosophiæ doctor (Ph. D.) Québec, Canada © Zeinab Ebrahimzadeh, 2019 Exploring the roles of phosphoinositides in the biology of the malaria parasite Plasmodium falciparum Thèse Zeinab Ebrahimzadeh M. Sc. Dave Richard, directeur de recherche Résumé Plasmodium falciparum est un parasite appartenant au phylum Apicomplexa et est à l’origine de la forme la plus sévère de la malaria. Dans les zones endémiques d'Afrique subsaharienne, la plupart des victimes sont des enfants de moins de cinq ans. L’entrée de P. falciparum dans sa cellule cible, le globule rouge, repose sur la sécrétion de protéines par des organites spécialisés : les micronèmes, les rhoptries et les granules denses. Les mécanismes de biogenèse de ces organites et la coordination de la libération de leur contenu lors de l'invasion sont cependant pour la plupart inconnus. Il a été toutefois été démontré que les protéines destinées à ces organites apicaux se concentrent dans des microdomaines de l’appareil de Golgi, dont la composition en lipides et en protéines détermine leur destination finale. À ce jour, les mécanismes de sélection et de transport des protéines apicales vers les organites d'invasion ainsi que leurs mécanismes de sécrétion durant l’invasion sont pour la plupart inconnus. Nous avons donc posé l’hypothèse que les phosphoinositides (PI) et leurs protéines effectrices sont impliqués dans ces processus chez P. falciparum. Les PI sont sept lipides phosphorylés retrouvés de façon minoritaire dans les différentes membranes cellulaires. Chaque membrane subcellulaire contient une espèce caractéristique de PI qui peut être reconnue et liée spécifiquement par des protéines effectrices. -
The Origin of Plastids By: Cheong Xin Chan, Ph.D
A Collaborative Learning Space for Science ABOUT FACULTY STUDENTS INTERMEDIATE CELL ORIGINS AND METABOLISM | Lead Editor: Gary Cote, Mario De Tullio The Origin of Plastids By: Cheong Xin Chan, Ph.D. & Debashish Bhattacharya, Ph.D. (Rutgers, The State University of New Jersey) © 2010 Nature Education Citation: Chan, C. X. & Bhattacharya, D. (2010) The Origin of Plastids. Nature Education 3(9):84 Plastids are core components of photosynthesis in plants and algae. Scientists are currently debating the events leading to the appearance of plastids in eukaryotic cells. Organelles, called plastids, are the main sites of photosynthesis in eukaryotic cells. Chloroplasts, as well as any other pigment containing cytoplasmic organelles that enables the harvesting and conversion of light and carbon dioxide into food and energy, are plastids. Found mainly in eukaryotic cells, plastids can be grouped into two distinctive types depending on their membrane structure: primary plastids and secondary plastids. Primary plastids are found in most algae and plants, and secondary, more-complex plastids are typically found in plankton, such as diatoms and dinoflagellates. Exploring the origin of plastids is an exciting field of research because it enhances our understanding of the basis of photosynthesis in green plants, our primary food source on planet Earth. Primary Plastids and Endosymbiosis Where did plastids originate? Their origin is explained by endosymbiosis, the act of a unicellular heterotrophic protist engulfing a free-living photosynthetic cyanobacterium and retaining it, instead of digesting it in the food vacuole (Margulis 1970; McFadden 2001; Kutschera & Niklas 2005). The captured cell (the endosymbiont) was then reduced to a functional organelle bound by two membranes, and was transmitted vertically to subsequent generations.