Comments on Puffers of the Genus Takifugu from Russian Waters with the First Record of Yellowfin Puffer, Takifugu Xanthopterus (
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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
Tetraodontiformes: Tetraodontidae) and Some Related Species, Including a New Species from Hawaii!
Pacific Science (1983), vol. 37, no. 1 © 1983 by the University of Hawaii Press. All rights reserved The Status of Torquigener hypselogeneion (Bleeker) (Tetraodontiformes: Tetraodontidae) and Some Related Species, including a New Species from Hawaii! GRAHAM S. H ARDy 2 ABSTl~ACT: Torquigener .hypselogeneion (Bleeker) and T.jiorealis (Cope) are redescnbed, and a neotype IS proposed for the former. That species differs from T. jiorealis in having smaller eye ~iameter , shorter caudal peduncle length, usuall!, lower.fin ray counts, and different color pattern. Torquigener randalli n:s~. IS descnbed .from six specimens from Oahu, Hawaii, differing from the similar T.jiorealis In shape ofdorsal and anal fins, a usually lower dorsal and anal fin ray count, and in color pattern. 1:'1 MARCH 1852 Bleeker published the descrip METHODS tion of a small pufferfish, which he called Measurements (taken to 2 significant Tetraodon hypselogeneion, based on speci figures) were by dial caliper, in a manner mens from Amboina (Ambon) (Bleeker similar to that outlined by Dekkers (1975). 1852a). In subsequent descriptions, he ex All measurements are from preserved speci tended the known distribution to cover much mens . Fin ray counts include all visible rays, ?f the D~tch Ea st Indies (Indonesia), and both branched and unbranched, and fin ray In 1865 Included examples, considered as lengths were determined from the embedded hypselogeneion, reported from the Red Sea as base. One example each of T. jiorealis and Tetrodon honckenii (not ofBloch), by Riippell T. randalli was cleared and stained and (1828). A central Pacific species, described as all others x-rayed, for examination of their ! etrodon .f!Nealis by Cope (1871), was later osteology. -
Seafood Banquets in Beijing: Consumer Perspectives and Implications for Environmental Sustainability
[Downloaded free from http://www.conservationandsociety.org on Thursday, June 27, 2019, IP: 139.191.247.3] Conservation and Society 12(2): 218-228, 2014 Article Seafood Banquets in Beijing: Consumer Perspectives and Implications for Environmental Sustainability Michael Fabinyia,# and Neng Liub aAustralian Research Council Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, Australia bDepartment of Sociology, Peking University, Beijing, China #Corresponding author. E‑mail: [email protected] Abstract Understanding the social drivers of increased seafood consumption in China, such as consumer perspectives in banquets, will be crucial if practical strategies to introduce sustainability into this market are to be successfully implemented. Based on 34 semi‑structured interviews with key informants including seafood restaurant operators, seafood consumers and seafood traders, this study investigated seafood consumer attitudes and behaviours in Beijing seafood restaurants. The results and discussion is divided into sections that address the popularity and reasons behind the popularity of: 1) seafood banquets in general; 2) fish at banquets; 3) other forms of seafood at banquets; and 4) preferred characteristics and qualities of seafood at banquets. The consumption of certain types of seafood such as live reef fish and sea cucumber is becoming increasingly popular, while the consumption of shark fin is decreasing in popularity. Awareness and concern about sustainability and traceability issues were relatively low, and more significant themes for understanding consumer preferences about seafood include social status and prestige, food safety and quality, and health and nutrition. The paper concludes by demonstrating the implications for market‑based interventions and government regulation. Keywords: China, consumption, markets, fisheries, banquets, seafood INTRODUCTION this seafood is imported from other countries. -
(Sea of Okhotsk, Sakhalin Island): 2. Cyclopteridae−Molidae Families
ISSN 0032-9452, Journal of Ichthyology, 2018, Vol. 58, No. 5, pp. 633–661. © Pleiades Publishing, Ltd., 2018. An Annotated List of the Marine and Brackish-Water Ichthyofauna of Aniva Bay (Sea of Okhotsk, Sakhalin Island): 2. Cyclopteridae−Molidae Families Yu. V. Dyldina, *, A. M. Orlova, b, c, d, A. Ya. Velikanove, S. S. Makeevf, V. I. Romanova, and L. Hanel’g aTomsk State University (TSU), Tomsk, Russia bRussian Federal Research Institute of Fishery and Oceanography (VNIRO), Moscow, Russia cInstitute of Ecology and Evolution, Russian Academy of Sciences (IPEE), Moscow, Russia d Dagestan State University (DSU), Makhachkala, Russia eSakhalin Research Institute of Fisheries and Oceanography (SakhNIRO), Yuzhno-Sakhalinsk, Russia fSakhalin Basin Administration for Fisheries and Conservation of Aquatic Biological Resources—Sakhalinrybvod, Aniva, Yuzhno-Sakhalinsk, Russia gCharles University in Prague, Prague, Czech Republic *e-mail: [email protected] Received March 1, 2018 Abstract—The second, final part of the work contains a continuation of the annotated list of fish species found in the marine and brackish waters of Aniva Bay (southern part of the Sea of Okhotsk, southern part of Sakhalin Island): 137 species belonging to three orders (Perciformes, Pleuronectiformes, Tetraodon- tiformes), 31 family, and 124 genera. The general characteristics of ichthyofauna and a review of the commer- cial fishery of the bay fish, as well as the final systematic essay, are presented. Keywords: ichthyofauna, annotated list, conservation status, commercial importance, marine and brackish waters, Aniva Bay, southern part of the Sea of Okhotsk, Sakhalin Island DOI: 10.1134/S0032945218050053 INTRODUCTION ANNOTATED LIST OF FISHES OF ANIVA BAY The second part concludes the publication on the 19. -
Genomics and Mapping of Teleostei (Bony fish)
Comparative and Functional Genomics Comp Funct Genom 2003; 4: 182–193. Published online 1 April 2003 in Wiley InterScience (www.interscience.wiley.com). DOI: 10.1002/cfg.259 Featured Organism Genomics and mapping of Teleostei (bony fish) Melody S. Clark* HGMP Resource Centre, Genome Campus, Hinxton, Cambridge CB2 4PP, UK *Correspondence to: Abstract Melody S. Clark, HGMP Resource Centre, Genome Until recently, the Human Genome Project held centre stage in the press releases Campus, Hinxton, Cambridge concerning sequencing programmes. However, in October 2001, it was announced CB2 4PP, UK. that the Japanese puffer fish (Takifugu rubripes, Fugu) was the second vertebrate E-mail: [email protected] organism to be sequenced to draft quality. Briefly, the spotlight was on fish genomes. There are currently two other fish species undergoing intensive sequencing, the green spotted puffer fish (Tetraodon nigroviridis) and the zebrafish (Danio rerio). But this trio are, in many ways, atypical representations of the current state of fish genomic research. The aim of this brief review is to demonstrate the complexity of fish as a Received: 10 November 2002 group of vertebrates and to publicize the ‘lesser-known’ species, all of which have Revised: 5 December 2002 something to offer. Copyright 2003 John Wiley & Sons, Ltd. Accepted: 28 January 2003 Keywords: Teleostei; fish; genomics; BACs; sequencing; aquaculture Background the wild-caught fisheries production figures. The equivalents within the EU are trout, Atlantic Fish have the potential to be immensely useful salmon and sea bass/bream for aquaculture; model organisms in medical research, as evidenced with herring, mackerel and sprat for wild-caught by the genomic sequencing programmes mentioned fisheries. -
Canestro 06Evodev Retinoic Acid Machinery in Non-Chordates.Pdf
EVOLUTION & DEVELOPMENT 8:5, 394–406 (2006) Is retinoic acid genetic machinery a chordate innovation? Cristian Can˜estro,a John H. Postlethwait,a Roser Gonza`lez-Duarte,b and Ricard Albalatb,Ã aInstitute of Neuroscience, University of Oregon, Eugene, OR 97403, USA bDepartament de Gene`tica, Universitat de Barcelona, Av. Diagonal 645, 08028 Barcelona, Spain ÃAuthor for correspondence (email: [email protected]) SUMMARY Development of many chordate features and showed for the first time that RA genetic machineryF depends on retinoic acid (RA). Because the action of RA that is Aldh1a, Cyp26, and Rar orthologsFis present in during development seems to be restricted to chordates, it had nonchordate deuterostomes. This finding implies that RA been previously proposed that the ‘‘invention’’ of RA genetic genetic machinery was already present during early machinery, including RA-binding nuclear hormone receptors deuterostome evolution, and therefore, is not a chordate (Rars), and the RA-synthesizing and RA-degrading enzymes innovation. This new evolutionary viewpoint argues against Aldh1a (Raldh) and Cyp26, respectively, was an important the hypothesis that the acquisition of gene families under- step for the origin of developmental mechanisms leading lying RA metabolism and signaling was a key event for to the chordate body plan. We tested this hypothesis the origin of chordates. We propose a new hypothesis in by conducting an exhaustive survey of the RA machinery which lineage-specific duplication and loss of RA machinery in genomic databases for twelve deuterostomes. We genes could be related to the morphological radiation of reconstructed the evolution of these genes in deuterostomes deuterostomes. INTRODUCTION which appears to be the sister group of chordates (Cameron et al. -
1 Exon Probe Sets and Bioinformatics Pipelines for All Levels of Fish Phylogenomics
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.18.949735; this version posted February 19, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Exon probe sets and bioinformatics pipelines for all levels of fish phylogenomics 2 3 Lily C. Hughes1,2,3,*, Guillermo Ortí1,3, Hadeel Saad1, Chenhong Li4, William T. White5, Carole 4 C. Baldwin3, Keith A. Crandall1,2, Dahiana Arcila3,6,7, and Ricardo Betancur-R.7 5 6 1 Department of Biological Sciences, George Washington University, Washington, D.C., U.S.A. 7 2 Computational Biology Institute, Milken Institute of Public Health, George Washington 8 University, Washington, D.C., U.S.A. 9 3 Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian 10 Institution, Washington, D.C., U.S.A. 11 4 College of Fisheries and Life Sciences, Shanghai Ocean University, Shanghai, China 12 5 CSIRO Australian National Fish Collection, National Research Collections of Australia, 13 Hobart, TAS, Australia 14 6 Sam Noble Oklahoma Museum of Natural History, Norman, O.K., U.S.A. 15 7 Department of Biology, University of Oklahoma, Norman, O.K., U.S.A. 16 17 *Corresponding author: Lily C. Hughes, [email protected]. 18 Current address: Department of Organismal Biology and Anatomy, University of Chicago, 19 Chicago, IL. 20 21 Keywords: Actinopterygii, Protein coding, Systematics, Phylogenetics, Evolution, Target 22 capture 23 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.02.18.949735; this version posted February 19, 2020. -
Takifugu Niphobles
Joseph Fratello Marine Biology Professor Tudge 10/16/17 Takifugu niphobles Introduction: The Takifugu niphobles or the Grass Puffer is a small fish that resides in the shallow waters of the Northwest Pacific Ocean. The scientific name of the fish comes from the japanese words of taki meaning waterfall and fugu meaning venomous fish (Torres, Armi G., et al). The Takifugu niphobles is part of the family Tetraodontidae which encompasses all puffer fish and are known for their ability to inflate like a balloon. The fish do this by quickly sucking water into their stomachs causing them to inflate and causing the flat lying spines which cover their bodies to become erect. Their diets consist of a wide array of small crustaceans and mollusks (Practical Fishkeeping, 2010). Takifugu niphobles are one of the two most common fish in the Northwest Pacific Ocean and are often accidently caught by fishermen who employ the bottom longline technique (Shao K, et al., 2014). The sale of these fish, including other puffers, are banned in japanese markets due to their highly toxic nature. Yet, puffer fish are considered a japanese delicacy despite the fact that a wrong cut of meat can kill a fully grown man. Upwards of thirty to fifty people are affected by the toxin every year and chefs must undergo two years of training before they can legally sell the fish (Dan Bloom 2015). These fish have a very unique means of reproduction, in which they swim towards the shore and lay their eggs on the beach. The fish then, with the help of the waves, beach themselves and fertilize these eggs. -
Oceanological and Hydrobiological Studies
Oceanological and Hydrobiological Studies International Journal of Oceanography and Hydrobiology Volume 49, No. 1, March 2020 ISSN 1730-413X pages (34-48) eISSN 1897-3191 Dominant species drive seasonal dynamics of the sh community in the Min estuary, China by Abstract Fishery resources are currently facing multiple stresses Jun Li, Bin Kang* such as over shing, pollution and climate change. Looking into processes and mechanisms of the dynamic sh community through detailed quantitative analyses contributes to e ective conservation and management of shery resources. The Min estuary plays an important role in maintaining sheries in southeastern coastal China, therefore the sh community in the brackish area was investigated and analyzed in this study. A total of 127 DOI: 10.1515/ohs-2020-0004 species belonging to 91 genera, 49 families and 14 orders Category: Original research paper were sampled in 2015. Eight indices re ecting four aspects of sh communities were determined, i.e. species richness, Received: May 5, 2019 species evenness, heterogeneity and taxonomy. Di erences Accepted: August 21, 2019 between the indices were nonsigni cant, suggesting that the use of a single diversity descriptor could not provide a full explanation. Nine dominant species in the Min estuary showed seasonal turnover by rational use of resources and Jimei University, 185 Yinjiang Rd., co-occurring species showed correspondingly adequate 361021 Xiamen, China habitat preferences and feeding habits to avoid competition. The species Harpadon nehereus occurred as the dominant species in three seasons except spring. High values of niche overlap among common or rare species and lower values of niche overlap among all dominant species e ectively brought the diversity of the sh community into a state of equilibrium. -
Acceptability Evaluation by Vietnamese About Non-Toxic Cultured Pufferfish in Comparison with Grouper and Mackerel
Asian Journal of Dietetics 2019 ORIGINAL Acceptability Evaluation by Vietnamese about Non-toxic Cultured Pufferfish in Comparison with Grouper and Mackerel Linh Vu Thuy1, Tuyen Le Danh3, Hien Vu Thi Thu3, Bat Nguyen Khac4, Ngoc Vuong Thi Ho3, Nghia Nguyen Viet4, Hien Bui Thi Thu4, Fumio Shimura1, Sumiko Kamoshita1, Yoshinari Ito2, Shigeru Yamamoto1 1 International Nutrition, Graduate School of Human Life Sciences, Jumonji University,Saitama 352-8510, Japan 2Mitsui Marine Products Inc, Miyazaki 889-0511, Japan 3 Vietnam National Institute of Nutrition, Hanoi, Vietnam 4 Vietnam Marine Fisheries Research Institute, Hai Phong, Vietnam (Recived June 4,2019) ABSTRACT Background and purpose. World-wide there are few countries in which pufferfish (fugu) is eaten as in Japan. In Vietnam, pufferfish has been banned since it’s toxic ocurred due to lack of knowledge about distinguish non-toxic species. Consequently, there is a huge amount of pufferfish inhabiting in Vietnamese water, but whenever accidentally catching it, we have to throw or use as fertilizer. To develop culinary culture of non-toxic pufferfish in Vietnam, it is very important and essential to recognize safe species and culture them in good condition, then apply proper method to process that become safety foods. In order to initial setting up for such purpose, we carried out a sensory study in Vietnamese to test whether they can accept foods made from fugu by method of Japanese. Methods. We compared the sensory reaction to Japanese cultured Takifugu rubripes and fish from Vietnamese waters: grouper and mackerel. The 107 panelists were Vietnamese volunteers working in the field of nutrition, employees of marine companies, or government officials who could influence the relevant laws. -
Adaptive Evolution of Low Salinity Tolerance and Hypoosmotic Regulation in a Euryhaline Teleost, Takifugu Obscurus
Adaptive evolution of low salinity tolerance and hypoosmotic regulation in a euryhaline teleost, Takifugu obscurus Hanyuan Zhang Key Laboratory of Aquatic Genomics, Ministry of Agriculture, CAFS Key Laboratory of Aquatic Genomics and Beijing Key Laboratory of Fishery Biotechnology, Chinese Academy of Fishery Sciences, Fengtai, Beijing, China Jilun Hou Beidaihe Central Experiment Station, Chinese Academy of Fishery Sciences, Qinhuangdao, Hebei, China Haijin Liu Breeding Laboratory, Dalian Tianzheng Industry Co. Ltd., Dalian, Liaoning, China Haoyong Zhu Wuxi Fisheries College, Nanjing Agricultural University, Wuxi, China Gangchun Xu Freshwater Fisheries Research Centre of Chinese Academy of Fishery Sciences, Wuxi, China Jian Xu ( [email protected] ) Chinese Academy of Fishery Sciences https://orcid.org/0000-0003-0274-4268 Research article Keywords: Takifugu, low salt-tolerance, hypoosmotic regulation, population genomics, genome re- sequencing Posted Date: October 30th, 2019 DOI: https://doi.org/10.21203/rs.2.16620/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Version of Record: A version of this preprint was published at Marine Biology on June 3rd, 2020. See the published version at https://doi.org/10.1007/s00227-020-03705-x. Page 1/20 Abstract Background The mechanism of osmoregulation is crucial for maintaining growth, development, and life activities in teleosts. Takifugu obscurus, the only euryhaline species in the genus Takifugu, is a proper model organism for studying the mechanism of low salt-tolerance and hypoosmotic regulation. Results In this study, whole genome sequencing data were obtained from 90 puffersh representing ve species within this genus, T. rubripes, T. obscurus, T. -
Husbandry Manual for BLUE-RINGED OCTOPUS Hapalochlaena Lunulata (Mollusca: Octopodidae)
Husbandry Manual for BLUE-RINGED OCTOPUS Hapalochlaena lunulata (Mollusca: Octopodidae) Date By From Version 2005 Leanne Hayter Ultimo TAFE v 1 T A B L E O F C O N T E N T S 1 PREFACE ................................................................................................................................ 5 2 INTRODUCTION ...................................................................................................................... 6 2.1 CLASSIFICATION .............................................................................................................................. 8 2.2 GENERAL FEATURES ....................................................................................................................... 8 2.3 HISTORY IN CAPTIVITY ..................................................................................................................... 9 2.4 EDUCATION ..................................................................................................................................... 9 2.5 CONSERVATION & RESEARCH ........................................................................................................ 10 3 TAXONOMY ............................................................................................................................12 3.1 NOMENCLATURE ........................................................................................................................... 12 3.2 OTHER SPECIES ...........................................................................................................................