The Multiple Roles of the Cdc14 Phosphatase in Cell Cycle Control
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Autophagy Controls Centrosome Number
www.impactjournals.com/oncotarget/ Oncotarget, 2017, Vol. 8, (No. 9), pp: 14277-14278 Editorial: Autophagy and Cell Death Autophagy controls centrosome number Shinya Honda and Shigeomi Shimizu It is believed that the number of centrosomes in a that in normal cells, and (4) silencing Cep63 decreased cell is tightly regulated by the degradation of centrosomal the number of centrosomes in autophagy-deficient cells. proteins via the ubiquitin–proteasome protein degradation From these findings, we concluded that Cep63 dots are the system. However, we recently demonstrated that direct substrates of autophagy and multiple centrosomes autophagy also participates in the regulation of centrosome are generated from the excess Cep63 dots in autophagy- number. deficient cells. The centrosome is the major component of the Consistent with these findings, in autophagy- microtubule organizing center of mammalian cells, deficient cells, most Cep63 dots directly bound to p62, and plays an essential role in chromosome segregation an adaptor or cargo receptor for autophagic degradation. during cell division. Centrosome number is tightly These p62-associated Cep63 dots were not become mature regulated during the cell cycle: G1 cells have one mature centrosomes, whereas some Cep63 dots become mature centrosome containing a pair of centrioles. Centriole centrosomes by their interaction with Cep152, instead of replication occurs during the S phase, and each centriole p62. Cep152 is the first protein to interact with Cep63 in duplicates to produce two daughter centrioles, to generate the initial step of centriole duplication (Figure 1). two centrosomes in the G2–M phase. If cells have more Our data indicated that Cep63 dots are continuously than three centrosomes during metaphase, this causes generated and rapidly degraded by autophagy. -
Autophagy Regulation by RNA Decay
On the edge of degradation: Autophagy regulation by RNA decay Elizabeth Delorme-Axford1 and Daniel J. Klionsky1# From the 1Life Sciences Institute, University of Michigan, Ann Arbor, MI 48109, USA # Correspondence to: Daniel J. Klionsky; University of Michigan; Life Sciences Institute; Rm. 6036; 210 Washtenaw Ave.; Ann Arbor, Michigan 48109-2216 USA; Email: [email protected] Keywords: Dcp2, DDX6, Dhh1, mRNA decay, RNA degradation, vacuole, Xrn1/XRN1, yeast Abbreviations: ATG, autophagy-related; CPA, cleavage and polyadenylation; Cvt, cytoplasm- to-vacuole targeting; GABARAP, GABA type A receptor-associated protein; MAP1LC3/ LC3, microtubule associated protein 1 light chain 3; miRNA, microRNA; mRNA, messenger RNA; MTOR, mechanistic target of rapamycin kinase; NMD, nonsense-mediated decay; qRT-PCR, quantitative real-time PCR; SG, stress granule; siRNA, small interfering RNA; TOR, target of rapamycin; TORC1, TOR complex 1; Ubl, ubiquitin-like; UTR, untranslated region This is the author manuscript accepted for publication and has undergone full peer review but has not been through the copyediting, typesetting, pagination and proofreading process, which may lead to differences between this version and the Version of Record. Please cite this article as doi: 10.1002/wrna.1522 1 This article is protected by copyright. All rights reserved. Running title: Autophagy regulation by RNA decay Abstract Cells must dynamically adapt to altered environmental conditions, particularly during times of stress, to ensure their ability to function effectively and survive. The macroautophagy/autophagy pathway is highly conserved across eukaryotic cells and promotes cell survival during stressful conditions. In general, basal autophagy occurs at a low level to sustain cellular homeostasis and metabolism. -
Autophagy: from Basic Science to Clinical Application
nature publishing group REVIEW See COMMENTARY page XX Autophagy: from basic science to clinical application J Va n L i m b e r g e n 1 , 2 , 3 , C S t e v e n s 4 , E R N i m m o 1 , D C W i l s o n 2 , 3 a n d J S a t s a n g i 1 Autophagy is a cellular pathway involved in protein and organelle degradation, which is likely to represent an innate adaptation to starvation. In times of nutrient deficiency, the cell can self-digest and recycle some nonessential components through nonselective autophagy, thus sustaining minimal growth requirements until a food source becomes available. Over recent years, autophagy has been implicated in an increasing number of clinical scenarios, notably infectious diseases, cancer, neurodegenerative diseases, and autoimmunity. The recent identification of the importance of autophagy genes in the genetic susceptibility to Crohn ’ s disease suggests that a selective autophagic response may play a crucial role in the pathogenesis of common complex immune-mediated diseases. In this review, we discuss the autophagic mechanisms, their molecular regulation, and summarize their clinical relevance. This progress has led to great interest in the therapeutic potential of manipulation of both selective and nonselective autophagy in established disease. INTRODUCTION The ability to adapt to environmental change is essential for sur- Autophagy encompasses several distinct processes involving vival. This is true for the organism as a whole and for individual the delivery of portions of the cytoplasm to the lysosome for cells alike. -
A Computational Approach for Defining a Signature of Β-Cell Golgi Stress in Diabetes Mellitus
Page 1 of 781 Diabetes A Computational Approach for Defining a Signature of β-Cell Golgi Stress in Diabetes Mellitus Robert N. Bone1,6,7, Olufunmilola Oyebamiji2, Sayali Talware2, Sharmila Selvaraj2, Preethi Krishnan3,6, Farooq Syed1,6,7, Huanmei Wu2, Carmella Evans-Molina 1,3,4,5,6,7,8* Departments of 1Pediatrics, 3Medicine, 4Anatomy, Cell Biology & Physiology, 5Biochemistry & Molecular Biology, the 6Center for Diabetes & Metabolic Diseases, and the 7Herman B. Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202; 2Department of BioHealth Informatics, Indiana University-Purdue University Indianapolis, Indianapolis, IN, 46202; 8Roudebush VA Medical Center, Indianapolis, IN 46202. *Corresponding Author(s): Carmella Evans-Molina, MD, PhD ([email protected]) Indiana University School of Medicine, 635 Barnhill Drive, MS 2031A, Indianapolis, IN 46202, Telephone: (317) 274-4145, Fax (317) 274-4107 Running Title: Golgi Stress Response in Diabetes Word Count: 4358 Number of Figures: 6 Keywords: Golgi apparatus stress, Islets, β cell, Type 1 diabetes, Type 2 diabetes 1 Diabetes Publish Ahead of Print, published online August 20, 2020 Diabetes Page 2 of 781 ABSTRACT The Golgi apparatus (GA) is an important site of insulin processing and granule maturation, but whether GA organelle dysfunction and GA stress are present in the diabetic β-cell has not been tested. We utilized an informatics-based approach to develop a transcriptional signature of β-cell GA stress using existing RNA sequencing and microarray datasets generated using human islets from donors with diabetes and islets where type 1(T1D) and type 2 diabetes (T2D) had been modeled ex vivo. To narrow our results to GA-specific genes, we applied a filter set of 1,030 genes accepted as GA associated. -
PEX5 Regulates Autophagy Via the Mtorc1-TFEB Axis During Starvation
Eun et al. Experimental & Molecular Medicine (2018) 50:4 DOI 10.1038/s12276-017-0007-8 Experimental & Molecular Medicine ARTICLE Open Access PEX5 regulates autophagy via the mTORC1-TFEB axis during starvation So Young Eun1,JoonNoLee2,In-KooNam2, Zhi-qiang Liu1,Hong-SeobSo 1, Seong-Kyu Choe1 and RaeKil Park2 Abstract Defects in the PEX5 gene impair the import of peroxisomal matrix proteins, leading to nonfunctional peroxisomes and other associated pathological defects such as Zellweger syndrome. Although PEX5 regulates autophagy process in a stress condition, the mechanisms controlling autophagy by PEX5 under nutrient deprivation are largely unknown. Herein, we show a novel function of PEX5 in the regulation of autophagy via Transcription Factor EB (TFEB). Under serum-starved conditions, when PEX5 is depleted, the mammalian target of rapamycin (mTORC1) inhibitor TSC2 is downregulated, which results in increased phosphorylation of the mTORC1 substrates, including 70S6K, S6K, and 4E- BP-1. mTORC1 activation further suppresses the nuclear localization of TFEB, as indicated by decreased mRNA levels of TFEB, LIPA, and LAMP1. Interestingly, peroxisomal mRNA and protein levels are also reduced by TFEB inactivation, indicating that TFEB might control peroxisome biogenesis at a transcriptional level. Conversely, pharmacological inhibition of mTOR resulting from PEX5 depletion during nutrient starvation activates TFEB by promoting nuclear localization of the protein. In addition, mTORC1 inhibition recovers the damaged-peroxisome biogenesis. These data suggest that PEX5 may be a critical regulator of lysosomal gene expression and autophagy through the mTOR-TFEB- autophagy axis under nutrient deprivation. 1234567890():,; 1234567890():,; Introduction Mitochondrial antiviral-signaling protein (MAVS) func- Peroxisome is an essential cellular organelle for per- tions as an antiviral signaling platform to induce the forming various metabolic activities, including oxidation interferon-independent signaling pathways4. -
Review Article PTEN Gene: a Model for Genetic Diseases in Dermatology
The Scientific World Journal Volume 2012, Article ID 252457, 8 pages The cientificWorldJOURNAL doi:10.1100/2012/252457 Review Article PTEN Gene: A Model for Genetic Diseases in Dermatology Corrado Romano1 and Carmelo Schepis2 1 Unit of Pediatrics and Medical Genetics, I.R.C.C.S. Associazione Oasi Maria Santissima, 94018 Troina, Italy 2 Unit of Dermatology, I.R.C.C.S. Associazione Oasi Maria Santissima, 94018 Troina, Italy Correspondence should be addressed to Carmelo Schepis, [email protected] Received 19 October 2011; Accepted 4 January 2012 Academic Editors: G. Vecchio and H. Zitzelsberger Copyright © 2012 C. Romano and C. Schepis. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. PTEN gene is considered one of the most mutated tumor suppressor genes in human cancer, and it’s likely to become the first one in the near future. Since 1997, its involvement in tumor suppression has smoothly increased, up to the current importance. Germline mutations of PTEN cause the PTEN hamartoma tumor syndrome (PHTS), which include the past-called Cowden, Bannayan- Riley-Ruvalcaba, Proteus, Proteus-like, and Lhermitte-Duclos syndromes. Somatic mutations of PTEN have been observed in glioblastoma, prostate cancer, and brest cancer cell lines, quoting only the first tissues where the involvement has been proven. The negative regulation of cell interactions with the extracellular matrix could be the way PTEN phosphatase acts as a tumor suppressor. PTEN gene plays an essential role in human development. A recent model sees PTEN function as a stepwise gradation, which can be impaired not only by heterozygous mutations and homozygous losses, but also by other molecular mechanisms, such as transcriptional regression, epigenetic silencing, regulation by microRNAs, posttranslational modification, and aberrant localization. -
Sample Thesis Title with a Concise and Accurate
DISTINCT FUNCTIONS FOR THE HIGHLY RELATED PP2A B55 REGULATORY SUBUNITS (Bα AND Bδ) IN CELL CYCLE REGULATION AND TUMOURIGENESIS by Dominik Sommerfeld B.Sc., The University of British Columbia, 2009 A THESIS SUBMITTED IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE AND POSTDOCTORAL STUDIES (Experimental Medicine) THE UNIVERSITY OF BRITISH COLUMBIA (Vancouver) August 2018 © Dominik Sommerfeld, 2018 The following individuals certify that they have read, and recommend to the Faculty of Graduate and Postdoctoral Studies for acceptance, the dissertation entitled: Distinct functions for the highly related PP2A B55 regulatory subunits (Bα and Bδ) in cell cycle regulation and tumourigenesis submitted by Dominik Sommerfeld in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Experimental Medicine Examining Committee: Catherine Pallen, Ph.D. Supervisor Christopher Maxwell, Ph.D. Supervisory Committee Member Gregg Morin, Ph.D. Supervisory Committee Member Stephan Taubert, Ph.D. University Examiner Calvin Roskelley, Ph.D. University Examiner Additional Supervisory Committee Members: Samuel Aparicio, Ph.D. Supervisory Committee Member ii Abstract Progression through the phases of the cell cycle (G1, S, G2, and mitosis) is largely driven by the coordinated activities of protein kinases and phosphatases, which orchestrate the phase-specific phosphorylation of proteins. Protein Phosphatase 2A (PP2A) – a heterotrimeric holoenzyme complex composed of a scaffold (A), catalytic (C), and variable regulatory (B) subunit – has emerged as an essential cell cycle regulator. Specifically, PP2A complexes containing the B55 family of regulatory subunits (PP2A-B55) have been implicated in the control of various cell cycle phases. My studies investigated isoform-specific roles of the two highly related and abundantly expressed B55 subunits, Bα and Bδ, in the regulation of G1, S, G2 phase and mitotic progression. -
Autophagy of an Amyloid-Like Translational Repressor Regulates Meiotic Exit
Short Article Autophagy of an Amyloid-like Translational Repressor Regulates Meiotic Exit Highlights Authors d Autophagy is required for meiotic exit Fei Wang, Rudian Zhang, Wenzhi Feng, ..., Jiajia Li, d Autophagy prevents additional rounds of chromosome Vladimir Denic, Soni Lacefield segregation after meiosis II Correspondence d Autophagy degrades the amyloid-like translational repressor Rim4 in meiosis II [email protected] (F.W.), [email protected] (V.D.), [email protected] (S.L.) d Inhibition of autophagy leads to aberrant persistence of meiotic regulators In Brief Wang et al. report that autophagy promotes meiotic termination by degrading Rim4, an amyloid-like translational repressor whose timed clearance in meiosis II regulates protein production from its mRNA targets. In the absence of autophagy, cells fail to exit meiosis and undergo additional rounds of chromosome segregation after meiosis II. Wang et al., 2020, Developmental Cell 52, 141–151 January 27, 2020 ª 2019 Elsevier Inc. https://doi.org/10.1016/j.devcel.2019.12.017 Developmental Cell Short Article Autophagy of an Amyloid-like Translational Repressor Regulates Meiotic Exit Fei Wang,1,* Rudian Zhang,1 Wenzhi Feng,1 Dai Tsuchiya,2,4 Olivia Ballew,2 Jiajia Li,1 Vladimir Denic,3,* and Soni Lacefield2,5,* 1Department of Internal Medicine, Center for Autophagy Research, UT Southwestern Medical Center, Dallas, TX, USA 2Department of Biology, Indiana University, Bloomington, IN, USA 3Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA, USA 4Present address: Stowers Institute for Medical Research, Kansas City, MO, USA 5Lead Contact *Correspondence: [email protected] (F.W.), [email protected] (V.D.), [email protected] (S.L.) https://doi.org/10.1016/j.devcel.2019.12.017 SUMMARY events during different stages of sexual reproduction and early stages of development (Yin et al., 2016). -
Autophagy in the Endocrine Glands
A WECKMAN and others Autophagy in the endocrine 52:2 R151–R163 Review glands Autophagy in the endocrine glands Andrea Weckman, Antonio Di Ieva, Fabio Rotondo1, Luis V Syro2, Leon D Ortiz3, Kalman Kovacs1 and Michael D Cusimano Division of Neurosurgery, Department of Surgery, St Michael’s Hospital, University of Toronto, Toronto, Ontario, Canada Correspondence 1Division of Pathology, Department of Laboratory Medicine, St Michael’s Hospital, University of Toronto, Toronto, should be addressed Ontario, Canada to A Di Ieva 2Department of Neurosurgery, Hospital Pablo Tobon Uribe and Clinica Medellin, Medellin, Colombia Email 3Division of Neurooncology, Instituto de Cancerologia, Clinic Las Americas, Medellin, Colombia [email protected] Abstract Autophagy is an important cellular process involving the degradation of intracellular Key Words components. Its regulation is complex and while there are many methods available, there is " autophagy currently no single effective way of detecting and monitoring autophagy. It has several " endocrine glands cellular functions that are conserved throughout the body, as well as a variety of different " crinophagy physiological roles depending on the context of its occurrence in the body. Autophagy is also " endocrine diseases involved in the pathology of a wide range of diseases. Within the endocrine system, autophagy has both its traditional conserved functions and specific functions. In the endocrine glands, autophagy plays a critical role in controlling intracellular hormone levels. In peptide-secreting cells of glands such as the pituitary gland, crinophagy, a specific form of autophagy, targets the secretory granules to control the levels of stored hormone. In steroid-secreting cells of glands such as the testes and adrenal gland, autophagy targets the steroid-producing organelles. -
ER-Phagy at a Glance Paolo Grumati1,*, Ivan Dikic1,2,‡ and Alexandra Stolz2,*
© 2018. Published by The Company of Biologists Ltd | Journal of Cell Science (2018) 131, jcs217364. doi:10.1242/jcs.217364 CELL SCIENCE AT A GLANCE ER-phagy at a glance Paolo Grumati1,*, Ivan Dikic1,2,‡ and Alexandra Stolz2,* ABSTRACT function in response to ER stress signals. This task sharing reflects Selective autophagy represents the major quality control mechanism the complexity of the ER in terms of biological functions and that ensures proper turnover of exhausted or harmful organelles, morphology. In this Cell Science at a Glance article and the among them the endoplasmic reticulum (ER), which is fragmented accompanying poster, we summarize the most recent findings and delivered to the lysosome for degradation via a specific type of about ER-phagy in yeast and in mammalian cells. autophagy called ER-phagy. The recent discovery of ER-resident KEY WORDS: Autophagy, CCPG1, FAM134B, RTN3, SEC62, proteins that bind to mammalian Atg8 proteins has revealed that the Endoplasmic reticulum selective elimination of ER involves different receptors that are specific for different ER subdomains or ER stresses. FAM134B (also known as RETREG1) and RTN3 are reticulon-type proteins that are Introduction able to remodel the ER network and ensure the basal membrane The endoplasmic reticulum (ER) is the largest membrane-bound turnover. SEC62 and CCPG1 are transmembrane ER receptors that organelle in eukaryotic cells. Its complex morphology, which involves sheets, tubules and matrices (Chen et al., 2013; Friedman and Voeltz, 2011; Nixon-Abell et al., 2016), mirrors its diverse roles 1Institute of Biochemistry II, Goethe University Frankfurt - Medical Faculty, in a variety of physiological processes including autophagy University Hospital, 60590 Frankfurt am Main, Germany. -
ER-Phagy and Its Role in ER Homeostasis in Plants
plants Review ER-Phagy and Its Role in ER Homeostasis in Plants Yan Bao 1,2,* and Diane C. Bassham 1,* 1 Department of Genetics, Development and Cell Biology, Iowa State University, Ames, IA 50011, USA 2 Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI 48824, USA * Correspondence: [email protected] (Y.B.); [email protected] (D.C.B.) Received: 19 November 2020; Accepted: 11 December 2020; Published: 14 December 2020 Abstract: The endoplasmic reticulum (ER) is the largest continuous membrane-bound cellular organelle and plays a central role in the biosynthesis of lipids and proteins and their distribution to other organelles. Autophagy is a conserved process that is required for recycling unwanted cellular components. Recent studies have implicated the ER as a membrane source for the formation of autophagosomes, vesicles that transport material to the vacuole during autophagy. When unfolded proteins accumulate in the ER and/or the ER lipid bilayer is disrupted, a condition known as ER stress results. During ER stress, ER membranes can also be engulfed through autophagy in a process termed ER-phagy. An interplay between ER stress responses and autophagy thus maintains the functions of the ER to allow cellular survival. In this review, we discuss recent progress in understanding ER-phagy in plants, including identification of regulatory factors and selective autophagy receptors. We also identify key unanswered questions in plant ER-phagy for future study. Keywords: autophagy; endoplasmic reticulum; ER stress; ER-phagy; unfolded protein response 1. Introduction Plants live in a world of ever-changing conditions; for survival, they need to adapt to the challenges of their surroundings to balance growth and stress responses [1,2]. -
Pharmacological Targeting of the Mitochondrial Phosphatase PTPMT1 by Dahlia Doughty Shenton Department of Biochemistry Duke
Pharmacological Targeting of the Mitochondrial Phosphatase PTPMT1 by Dahlia Doughty Shenton Department of Biochemistry Duke University Date: May 1 st 2009 Approved: ___________________________ Dr. Patrick J. Casey, Supervisor ___________________________ Dr. Perry J. Blackshear ___________________________ Dr. Anthony R. Means ___________________________ Dr. Christopher B. Newgard ___________________________ Dr. John D. York Dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of Biochemistry in the Graduate School of Duke University 2009 ABSTRACT Pharmacological Targeting of the Mitochondrial Phosphatase PTPMT1 by Dahlia Doughty Shenton Department of Biochemistry Duke University Date: May 1 st 2009 Approved: ___________________________ Dr. Patrick J. Casey, Supervisor ___________________________ Dr. Perry J. Blackshear ___________________________ Dr. Anthony R. Means ___________________________ Dr. Christopher B. Newgard ___________________________ Dr. John D. York An abstract of a dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of Biochemistry in the Graduate School of Duke University 2009 Copyright by Dahlia Doughty Shenton 2009 Abstract The dual specificity protein tyrosine phosphatases comprise the largest and most diverse group of protein tyrosine phosphatases and play integral roles in the regulation of cell signaling events. The dual specificity protein tyrosine phosphatases impact multiple