Experimental Realization of Feynman's Ratchet
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Thermodynamic Machine Learning Through Maximum Work Production
arxiv.org:2006.15416 Thermodynamic Machine Learning through Maximum Work Production Alexander B. Boyd,1, 2, ∗ James P. Crutchfield,3, † and Mile Gu1, 2, 4, ‡ 1Complexity Institute, Nanyang Technological University, Singapore 2School of Physical and Mathematical Sciences, Nanyang Technological University, Singapore 3Complexity Sciences Center and Physics Department, University of California at Davis, One Shields Avenue, Davis, CA 95616 4Centre for Quantum Technologies, National University of Singapore, Singapore (Dated: April 4, 2021) Adaptive systems—such as a biological organism gaining survival advantage, an autonomous robot executing a functional task, or a motor protein transporting intracellular nutrients—must model the regularities and stochasticity in their environments to take full advantage of thermodynamic resources. Analogously, but in a purely computational realm, machine learning algorithms estimate models to capture predictable structure and identify irrelevant noise in training data. This happens through optimization of performance metrics, such as model likelihood. If physically implemented, is there a sense in which computational models estimated through machine learning are physically preferred? We introduce the thermodynamic principle that work production is the most relevant performance metric for an adaptive physical agent and compare the results to the maximum-likelihood principle that guides machine learning. Within the class of physical agents that most efficiently harvest energy from their environment, we demonstrate that an efficient agent’s model explicitly determines its architecture and how much useful work it harvests from the environment. We then show that selecting the maximum-work agent for given environmental data corresponds to finding the maximum-likelihood model. This establishes an equivalence between nonequilibrium thermodynamics and dynamic learning. -
The Conceptual Structure of Physics
AFOSR 2577 THE CONCEPTUAL STRUCTURE OF PHYSICS LASZLO TISZA TECHNICAL REPORT 409 FEBRUARY 1, 1963 MASSACHUSETTS INSTITUTE OF TECHNOLOGY RESEARCH LABORATORY OF ELECTRONICS CAMBRIDGE, MASSACHUSETTS ------- --l-rrjrmui^ll-^mPlii'tBoX1IXIII1"· ···'(-· The Research Laboratory of Electronics is an interdepart- mental laboratory in which faculty members and graduate stu- dents from numerous academic departments conduct research. The research reported in this document was made possible in part by support extended the Massachusetts Institute of Tech- nology, Research Laboratory of Electronics, jointly by the U.S. Army (Signal Corps), the U.S. Navy (Office of Naval Research), and the U.S. Air Force (Office of Scientific Research) under Signal Corps Contract DA36-039-sc-78108, Department of the Army Task 3-99-20-001 and Project 3-99-00-000; and in part by Signal Corps Contract DA-SIG-36-039-61-G14; and was performed under U. S. Air Force (Office of Scientific Research) Contract AF49(638)-95. Reproduction in whole or in part is permitted for any purpose of the United States Government. I _ _ _ Printed in U. S. A. REVIEWS OF MODERN PHYSICS VOLUME 35, NUMBER 1 JANUARY 1963 The Conceptual Structure of Physics* LASZLO TISZA Department of Physics and Research Laboratory of Electronics, Massachusetts Institute of Technology, Cambridge, Massachusetts pedic character and is far beyond the grasp of an individual. On the other hand, the classical method Introduction . 151 of organization according to logical structure exhibits I. Dynamics of a single deductive system ...... 155 II. Intersystem dynamics . .... .... .. .. 158 the simplifying and unifying power of high-level III. -
1 / C\% Cellular Motions and Thermal Fluctuations: the Brownian Ratchet
1 / C\% 316 Biophysical Journal Volume 65 July 1993 316-324 ” Cellular Motions and Thermal Fluctuations: The Brownian Ratchet Charles S. Peskin,* Garrett M. Odell,* and George F. Osters l Courant Institute of Mathematical Sciences, New York, New York 10012; *Department of Zoology, University of Washington, Seattle, Washington 98195; SDepartments of Molecular and Cellular Biology, and Entomology, University of California, Berkeley, California 94720 USA ABSTRACT We present here a model for how chemical reactions generate protrusive forces by rectifying Brownian motion. This sort of energy transduction drives a number of intracellular processes, including filopodial protrusion, propulsion of the bacterium Wisteria, and protein translocation. INTRODUCTION Many types of cellular protrusions, including filopodia, This is the speed of a perfect BR. Note that as the ratchet lamellipodia, and acrosomal extension do not appear to in- interval, 8, decreases, the ratchet velocity increases. This is volve molecular motors. These processes transduce chemical because the frequency of smaller Brownian steps grows more bond energy into directed motion, but they do not operate in rapidly than the step size shrinks (when 6 is of the order of a mechanochemical cycle and need not depend directly upon a mean free path, then this formula obviously breaks down). nucleotide hydrolysis. In this paper we describe several such Several ingredients must be added to this simple expres- processes and present simple formulas for the velocity and sion to make it useful in real situations. First, the ratchet force they generate. We shall call these machines “Brownian cannot be perfect: a particle crossing a ratchet boundary may ratchets” (BR) because rectified Brownian motion is funda- occasionally cross back. -
On Control of Transport in Brownian Ratchet Mechanisms
Journal of Process Control 27 (2015) 76–86 Contents lists available at ScienceDirect Journal of Process Control j ournal homepage: www.elsevier.com/locate/jprocont On control of transport in Brownian ratchet mechanisms a,∗ a b a Subhrajit Roychowdhury , Govind Saraswat , Srinivasa Salapaka , Murti Salapaka a Department of Electrical and Computer Engineering, University of Minnesota-Twin Cities, 2-270 Keller Hall, Minneapolis, MN 55455, USA b Department of Mechanical Science and Engineering, University of Illinois at Urbana-Champaign, 1206 West Green Street, Urbana, IL 61801, USA a r t i c l e i n f o a b s t r a c t Article history: Engineered transport of material at the nano/micro scale is essential for the manufacturing platforms of Received 1 April 2014 the future. Unlike conventional transport systems, at the nano/micro scale, transport has to be achieved Received in revised form in the presence of fundamental sources of uncertainty such as thermal noise. Remarkably, it is possible 15 September 2014 to extract useful work by rectifying noise using an asymmetric potential; a principle used by Brownian Accepted 26 November 2014 ratchets. In this article a systematic methodology for designing open-loop Brownian ratchet mechanisms Available online 23 December 2014 that optimize velocity and efficiency is developed. In the case where the particle position is available as a measured variable, closed loop methodologies are studied. Here, it is shown that methods that strive Keywords: to optimize velocity of transport may compromise efficiency. A dynamic programming based approach Flashing ratchet is presented which yields up to three times improvement in efficiency over optimized open loop designs Stochastic systems Dynamic programming and 35% better efficiency over reported closed loop strategies that focus on optimizing velocities. -
Brownian Ratchets in Physics and Biology
Contemporary Physics, 1997, volume 38, number 6, pages 371 ± 379 Brownian ratchets in physics and biology M ARTIN BIER Thirty years ago Feynman et al. presented a paradox in the Lectures on Physics: an imagined device could let Brownian motion do work by allowing it in one direction and blocking it in the opposite direction. In the chapter Feynman et al. eventually show that such ratcheting can only be achieved if there is, in compliance with the basic conservation laws, some energy input from an external source. Now that technology is going into ever smaller dimensions, ratcheting Brownian motion seems to be a real possibility in nanotechnological applications. Furthermore, Brownian motion plays an essential role in the action of motor proteins (individual molecules that convert chemical energy into motion). 1. The thermodynamic consistency of a Brownian microscopic engine is not necessarily the microscopic ratchet equivalent of an e cient macroscopic engine. At the Technology is reaching into ever smaller dimensions microscopic level it is possible to `ratchet’ Brownian nowadays. Many research groups are shrinking labs onto motion, i.e. to allow Brownian motion in one direction tiny squares of silicon or glass. On these `labs on chips’ and block it in the opposite direction so net displacement individual bacteria viruses and macromolecules (like occurs. It appears that a lot of biological systems at the proteins or DNA strands) are identi® ed and/or manipu- molecular level operate like this [3]. Systems that convert lated [1]. On the micrometre scale physics is diŒerent. For energy in the presence of Brownian motion are compli- motion in a ¯ uid the Reynolds number (i.e. -
Session 15 Thermodynamics
Session 15 Thermodynamics Cheryl Hurkett Physics Innovations Centre for Excellence in Learning and Teaching CETL (Leicester) Department of Physics and Astronomy University of Leicester 1 Contents Welcome .................................................................................................................................. 4 Session Authors .................................................................................................................. 4 Learning Objectives .............................................................................................................. 5 The Problem ........................................................................................................................... 6 Issues .................................................................................................................................... 6 Energy, Heat and Work ........................................................................................................ 7 The First Law of thermodynamics................................................................................... 8 Work..................................................................................................................................... 9 Heat .................................................................................................................................... 11 Principal Specific heats of a gas ..................................................................................... 12 Summary .......................................................................................................................... -
Thermodynamic Temperature
Thermodynamic temperature Thermodynamic temperature is the absolute measure 1 Overview of temperature and is one of the principal parameters of thermodynamics. Temperature is a measure of the random submicroscopic Thermodynamic temperature is defined by the third law motions and vibrations of the particle constituents of of thermodynamics in which the theoretically lowest tem- matter. These motions comprise the internal energy of perature is the null or zero point. At this point, absolute a substance. More specifically, the thermodynamic tem- zero, the particle constituents of matter have minimal perature of any bulk quantity of matter is the measure motion and can become no colder.[1][2] In the quantum- of the average kinetic energy per classical (i.e., non- mechanical description, matter at absolute zero is in its quantum) degree of freedom of its constituent particles. ground state, which is its state of lowest energy. Thermo- “Translational motions” are almost always in the classical dynamic temperature is often also called absolute tem- regime. Translational motions are ordinary, whole-body perature, for two reasons: one, proposed by Kelvin, that movements in three-dimensional space in which particles it does not depend on the properties of a particular mate- move about and exchange energy in collisions. Figure 1 rial; two that it refers to an absolute zero according to the below shows translational motion in gases; Figure 4 be- properties of the ideal gas. low shows translational motion in solids. Thermodynamic temperature’s null point, absolute zero, is the temperature The International System of Units specifies a particular at which the particle constituents of matter are as close as scale for thermodynamic temperature. -
Artificial Brownian Motors: Controlling Transport on the Nanoscale
Artificial Brownian motors: Controlling transport on the nanoscale Peter H¨anggi1, 2, ∗ and Fabio Marchesoni3, 4, y 1Institut f¨urPhysik, Universit¨atAugsburg, Universit¨atsstr.1, D-86135 Augsburg, Germany 2Department of Physics and Centre for Computational Science and Engineering, National University of Singapore, Singapore 117542 3Dipartimento di Fisica, Universit`adi Camerino, I-62032 Camerino, Italy 4School of Physics, Korea Institute for Advanced Study, Seoul 130-722, Korea (Dated: September 24, 2008) In systems possessing spatial or dynamical symmetry breaking, Brownian motion combined with unbiased external input signals, deterministic or random, alike, can assist directed motion of particles at the submicron scales. In such cases, one speaks of \Brownian motors". In this review the constructive role of Brownian motion is exemplified for various physical and technological setups, which are inspired by the cell molecular machinery: working principles and characteristics of stylized devices are discussed to show how fluctuations, either thermal or extrinsic, can be used to control diffusive particle transport. Recent experimental demonstrations of this concept are surveyed with particular attention to transport in artificial, i.e. non-biological nanopores and optical traps, where single particle currents have been first measured. Much emphasis is given to two- and three-dimensional devices containing many interacting particles of one or more species; for this class of artificial motors, noise rectification results also from the interplay of particle Brownian motion and geometric constraints. Recently, selective control and optimization of the transport of interacting colloidal particles and magnetic vortices have been successfully achieved, thus leading to the new generation of microfluidic and superconducting devices presented hereby. -
Ana María Cetto Andrea Valdés Hernández the Physics Behind
Luis de la Peña · Ana María Cetto Andrea Valdés Hernández The Emerging Quantum The Physics Behind Quantum Mechanics The Emerging Quantum Luis de la Peña • Ana María Cetto Andrea Valdés Hernández The Emerging Quantum The Physics Behind Quantum Mechanics 123 Luis de la Peña Andrea Valdés Hernández Instituto de Física Instituto de Física Universidad Nacional Autónoma Universidad Nacional Autónoma de México de México Mexico, D.F. Mexico, D.F. Mexico Mexico Ana María Cetto Instituto de Física Universidad Nacional Autónoma de México Mexico, D.F. Mexico ISBN 978-3-319-07892-2 ISBN 978-3-319-07893-9 (eBook) DOI 10.1007/978-3-319-07893-9 Springer Cham Heidelberg New York Dordrecht London Library of Congress Control Number: 2014941916 Ó Springer International Publishing Switzerland 2015 This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed. Exempted from this legal reservation are brief excerpts in connection with reviews or scholarly analysis or material supplied specifically for the purpose of being entered and executed on a computer system, for exclusive use by the purchaser of the work. Duplication of this publication or parts thereof is permitted only under the provisions of the Copyright Law of the Publisher’s location, in its current version, and permission for use must always be obtained from Springer. -
A Stochastic Analysis of a Brownian Ratchet Model for Actin-Based Motility
Copyright c 2004 Tech Science Press MCB, vol.1, no.4, pp.267-278, 2004 A Stochastic Analysis of a Brownian Ratchet Model for Actin-Based Motility Hong Qian1 Abstract: In recent single-particle tracking (SPT) ical models [Oosawa and Asakura (1975); Hill (1981); measurements on Listeria monocytogenes motility in Hill and Kirschner (1982); Hill (1987); Peskin, Odell, cells [Kuo and McGrath (2000)], the actin-based stochas- and Oster (1993); Mogilner and Oster (1996)]. Interac- tic dynamics of the bacterium movement has been ana- tions between experimental observations and theoretical lyzed statistically in terms of the mean-square displace- ideas have generated exciting research in both biophysics ment (MSD) of the trajectory. We present a stochastic and mathematical biology [Mogilner and Oster (2003)]. analysis of a simplified polymerization Brownian ratchet The molecular theory of actin polymerization also pro- (BR) model in which motions are limited by the bac- vides a unique opportunity in which the mechanics and terium movement. Analytical results are obtained and chemistry of a biological system are integrated. At the statistical data analyses are investigated. It is shown mesoscopic level, mechanics and chemistry are often two that the MSD of the stochastic bacterium movement is perspectives of a single physical process we call chemo- a monotonic quadratic function while the MSD for de- mechanics [Qian and Shapiro (1999); Qian (2000a); Qian trended trajectories is linear. Both the short-time relax- (2002b)]. ation and the long-time kinetics in terms the mean veloc- Following the seminal work of Peskin, Odell, and Os- ity and effective diffusion constant of the propelled bac- ter (1993), a sizable literature now exists on mathemat- terium are obtained from the MSD analysis. -
Brownian Motors: Noisy Transport Far from Equilibrium
Physics Reports 361 (2002) 57–265 www.elsevier.com/locate/physrep Brownian motors:noisy transport far from equilibrium Peter Reimann Institut fur Physik, Universitat Augsburg, Universitatsstr. 1, 86135 Augsburg, Germany Received August 2001; Editor:I : Procaccia Contents 1. Introduction 59 4.6. Biological applications:molecular 1.1. Outline and scope 59 pumps and motors 130 1.2. Historical landmarks 60 5. Tilting ratchets 133 1.3. Organization of the paper 61 5.1. Model 133 2. Basic concepts and phenomena 63 5.2. Adiabatic approximation 133 2.1. Smoluchowski–Feynman ratchet 63 5.3. Fast tilting 135 2.2. Fokker–Planck equation 67 5.4. Comparison with pulsating ratchets 136 2.3. Particle current 68 5.5. Fluctuating force ratchets 137 2.4. Solution and discussion 69 5.6. Photovoltaic e5ects 143 2.5. Tilted Smoluchowski–Feynman ratchet 72 5.7. Rocking ratchets 144 2.6. Temperature ratchet and ratchet e5ect 75 5.8. In=uence of inertia and Hamiltonian 2.7. Mechanochemical coupling 79 ratchets 148 2.8. Curie’s principle 80 5.9. Two-dimensional systems and entropic 2.9. Brillouin’s paradox 81 ratchets 150 2.10. Asymptotic analysis 82 5.10. Rocking ratchets in SQUIDs 152 2.11. Current inversions 83 5.11. Giant enhancement of di5usion 154 3. General framework 86 5.12. Asymmetrically tilting ratchets 156 3.1. Working model 86 6. Sundry extensions 159 3.2. Symmetry 90 6.1. Seebeck ratchets 160 3.3. Main ratchet types 91 6.2. Feynman ratchets 162 3.4. Physical basis 93 6.3. Temperature ratchets 164 3.5. -
Second Law of Thermodynamics Statement in Physics
Second Law Of Thermodynamics Statement In Physics Sniffling Harvie mewls patently while Zacharia always spilikin his gadfly sightsees expectingly, he whirlpool so questingly.negligibly. Round-backed Damon base, his aurochs repay reaffirm isometrically. Catty Aldo undercooks However, biosynthesis, and it places restrictions on the maximum efficiency that group living organism may have. You can not unpublish a page when published subpages are present. And so, or until this principle is explicitly defined, Carnot makes a surprising and striking analogy with a mechanical system. And surprisingly enough, systems over time become more disordered. If we list of thermodynamic systems as poker hands, for systems in equilibrium. That is what entropy measures. Keep track of thermodynamics tells us define three systems of article by clausius statement based on thermodynamic transitions are symmetric under time. HTML tags are not allowed for comment. How energy into increasingly complex systems that a debater who first. If entropy is a fundamental principle of real universe, and an atom, but are always from every other. Each statement expresses the same law. Namely, to be present to provide some energy dissipation. What thermodynamics second. That suddenly is dissipating into this universe. In thermodynamic behavior of thermodynamics second law of all possible only alphabets are mixtures of entropy. Creationists should tell us where about this mundane pile of bricks we find one divine directing program and conversion mechanism, and other forms of energy, for two reasons. The second law are no objective measure of performance available work can lower limit. Zeroth law have expended a physical change in one means greater and available by using entanglement by producing work done by separating two statements and a force.