Genocad 2.0: Thinking Inside the Box Mandy Wilson, Laura Adam and Jean Peccoud
2 The following students were provided financial support by our sponsors to attend the workshop Laura Adam, 2nd year PhD, Virginia Bioinformatics Institute Swapnil Bhatia, Postdoctoral researcher, Boston University Benjamin Braun, 3rd year undergraduate, University of Texas at Austin Deepak Chandran, 4th year PhD, University of Washington Johann Desire Hai Elbaz, 3rd year PhD, The Hebrew University of Jerusalem Michal Galdzicki, 4th year PhD, University of Washington School of Medicine Roza Ghamari, 1st year MS, Boston University Cristian Grecu, NSERC Postdoctoral Fellow, MIT Victor Vasilev, 1st year PhD, Boston University 3 Foreword Welcome to the Third International Workshop on Bio-Design Automation (IWBDA) at DAC. IWBDA 2011 brings together researchers from the synthetic biology, systems biology, and design automation communities. The focus is on concepts, methodologies and software tools for the computational analysis of biological systems and the synthesis of biological systems. Still in its early stages, the field of synthetic biology has been driven by experimental expertise; much of its success can be attributed to the skill of the researchers in specific domains of biology. There has been a concerted effort to assemble repositories of standardized components. However, creating and integrating synthetic components remains an ad hoc process. The field has now reached a stage where it calls for computer-aided design tools. The electronic design automation (EDA) community has unique expertise to contribute to this endeavor. This workshop offers a forum for cross- disciplinary discussion, with the aim of seeding collaboration between the research communities. This year, the program consists of 15 talks and 11 poster presentations. These are organized into 5 sessions: Gene Network Reconstruction, CAD Tools for Synthetic Biology, Biological Circuit Design, Biological Circuit Simulators, and Parts and Standardization.
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