Metabolic Activity of Micromycetes Affecting Urban Concrete Constructions
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Diversity and Saline Resistance of Endophytic Fungi Associated with Pinus Thunbergii in Coastal Shelterbelts of Korea Young Ju Min1, Myung Soo Park1, Jonathan J
J. Microbiol. Biotechnol. (2014), 24(3), 324–333 http://dx.doi.org/10.4014/jmb.1310.10041 Research Article jmb Diversity and Saline Resistance of Endophytic Fungi Associated with Pinus thunbergii in Coastal Shelterbelts of Korea Young Ju Min1, Myung Soo Park1, Jonathan J. Fong1, Ying Quan1, Sungcheol Jung2, and Young Woon Lim1* 1School of Biological Sciences, Seoul National University, Seoul 151-747, Republic of Korea 2Warm-Temperate and Subtropical Forest Research Center, KFRI, Seogwipo 697-050, Republic of Korea Received: October 14, 2013 Revised: November 29, 2013 The Black Pine, Pinus thunbergii, is widely distributed along the eastern coast of Korea and its Accepted: December 4, 2013 importance as a shelterbelt was highlighted after tsunamis in Indonesia and Japan. The root endophytic diversity of P. thunbergii was investigated in three coastal regions; Goseong, Uljin, and Busan. Fungi were isolated from the root tips, and growth rates of pure cultures were First published online measured and compared between PDA with and without 3% NaCl to determine their saline December 9, 2013 resistance. A total of 259 isolates were divided into 136 morphotypes, of which internal *Corresponding author transcribed spacer region sequences identified 58 species. Representatives of each major fungi Phone: +82-2-880-6708; phylum were present: 44 Ascomycota, 8 Zygomycota, and 6 Basidiomycota. Eighteen species Fax: +82-2-871-5191; exhibited saline resistance, many of which were Penicillium and Trichoderma species. Shoreline E-mail: [email protected] habitats harbored higher saline-tolerant endophytic diversity compared with inland sites. This investigation indicates that endophytes of P. thunbergii living closer to the coast may have pISSN 1017-7825, eISSN 1738-8872 higher resistance to salinity and potentially have specific relationships with P. -
Identification and Nomenclature of the Genus Penicillium
Downloaded from orbit.dtu.dk on: Dec 20, 2017 Identification and nomenclature of the genus Penicillium Visagie, C.M.; Houbraken, J.; Frisvad, Jens Christian; Hong, S. B.; Klaassen, C.H.W.; Perrone, G.; Seifert, K.A.; Varga, J.; Yaguchi, T.; Samson, R.A. Published in: Studies in Mycology Link to article, DOI: 10.1016/j.simyco.2014.09.001 Publication date: 2014 Document Version Publisher's PDF, also known as Version of record Link back to DTU Orbit Citation (APA): Visagie, C. M., Houbraken, J., Frisvad, J. C., Hong, S. B., Klaassen, C. H. W., Perrone, G., ... Samson, R. A. (2014). Identification and nomenclature of the genus Penicillium. Studies in Mycology, 78, 343-371. DOI: 10.1016/j.simyco.2014.09.001 General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. • Users may download and print one copy of any publication from the public portal for the purpose of private study or research. • You may not further distribute the material or use it for any profit-making activity or commercial gain • You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 78: 343–371. Identification and nomenclature of the genus Penicillium C.M. -
Identification and Nomenclature of the Genus Penicillium
available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 78: 343–371. Identification and nomenclature of the genus Penicillium C.M. Visagie1, J. Houbraken1*, J.C. Frisvad2*, S.-B. Hong3, C.H.W. Klaassen4, G. Perrone5, K.A. Seifert6, J. Varga7, T. Yaguchi8, and R.A. Samson1 1CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, NL-3584 CT Utrecht, The Netherlands; 2Department of Systems Biology, Building 221, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark; 3Korean Agricultural Culture Collection, National Academy of Agricultural Science, RDA, Suwon, Korea; 4Medical Microbiology & Infectious Diseases, C70 Canisius Wilhelmina Hospital, 532 SZ Nijmegen, The Netherlands; 5Institute of Sciences of Food Production, National Research Council, Via Amendola 122/O, 70126 Bari, Italy; 6Biodiversity (Mycology), Agriculture and Agri-Food Canada, Ottawa, ON K1A0C6, Canada; 7Department of Microbiology, Faculty of Science and Informatics, University of Szeged, H-6726 Szeged, Közep fasor 52, Hungary; 8Medical Mycology Research Center, Chiba University, 1-8-1 Inohana, Chuo-ku, Chiba 260-8673, Japan *Correspondence: J. Houbraken, [email protected]; J.C. Frisvad, [email protected] Abstract: Penicillium is a diverse genus occurring worldwide and its species play important roles as decomposers of organic materials and cause destructive rots in the food industry where they produce a wide range of mycotoxins. Other species are considered enzyme factories or are common indoor air allergens. Although DNA sequences are essential for robust identification of Penicillium species, there is currently no comprehensive, verified reference database for the genus. To coincide with the move to one fungus one name in the International Code of Nomenclature for algae, fungi and plants, the generic concept of Penicillium was re-defined to accommodate species from other genera, such as Chromocleista, Eladia, Eupenicillium, Torulomyces and Thysanophora, which together comprise a large monophyletic clade. -
Diversity and Communities of Fungal Endophytes from Four Pi‐ Nus Species in Korea
Supplementary materials Diversity and communities of fungal endophytes from four Pi‐ nus species in Korea Soon Ok Rim 1, Mehwish Roy 1, Junhyun Jeon 1, Jake Adolf V. Montecillo 1, Soo‐Chul Park 2 and Hanhong Bae 1,* 1 Department of Biotechnology, Yeungnam University, Gyeongsan, Gyeongbuk 38541, Republic of Korea 2 Crop Biotechnology Institute, Green Bio Science & Technology, Seoul National University, Pyeongchang, Kangwon 25354, Republic of Korea * Correspondence: [email protected]; tel: 8253‐810‐3031 (office); Fax: 8253‐810‐4769 Keywords: host specificity; fungal endophyte; fungal diversity; pine trees Table S1. Characteristics and conditions of 18 sampling sites in Korea. Ka Ca Mg Precipitation Temperature Organic Available Available Geographic Loca‐ Latitude Longitude Altitude Tree Age Electrical Con‐ pine species (mm) (℃) pH Matter Phosphate Silicic acid tions (o) (o) (m) (years) (cmol+/kg) dictivity 2016 2016 (g/kg) (mg/kg) (mg/kg) Ansung (1R) 37.0744580 127.1119200 70 45 284 25.5 5.9 20.8 252.4 0.7 4.2 1.7 0.4 123.2 Seosan (2R) 36.8906971 126.4491716 60 45 295.6 25.2 6.1 22.3 336.6 1.1 6.6 2.4 1.1 75.9 Pinus rigida Jungeup (3R) 35.5521138 127.0191565 240 45 205.1 27.1 5.3 30.4 892.7 1.0 5.8 1.9 0.2 7.9 Yungyang(4R) 36.6061179 129.0885334 250 43 323.9 23 6.1 21.4 251.2 0.8 7.4 2.8 0.1 96.2 Jungeup (1D) 35.5565492 126.9866204 310 50 205.1 27.1 5.3 30.4 892.7 1.0 5.8 1.9 0.2 7.9 Jejudo (2D) 33.3737599 126.4716048 1030 40 98.6 27.4 5.3 50.6 591.7 1.2 4.6 1.8 1.7 0.0 Pinus densiflora Hoengseong (3D) 37.5098629 128.1603840 540 45 360.1 -
Diversity, Antimicrobial Activities and Associated Microbiota of Soil Penicillia from Virgin Forest Floor
Journal of Microbiology, Biotechnology and Chutia et al. 2012 : 1 (5) 1279-1294 Food Sciences REGULAR ARTICLE DIVERSITY, ANTIMICROBIAL ACTIVITIES AND ASSOCIATED MICROBIOTA OF SOIL PENICILLIA FROM VIRGIN FOREST FLOOR M. Chutia*1,2 and G.U. Ahmed1 Address*: M.Sc., M. Chutia, 1Central Muga Eri Research & Training Institute, Jorhat- 785700, Assam (India), email: [email protected], Tel: +913762335124 2Department of Biotechnology, Gauhati University, Guwahati-781014, Assam (India), ABSTRACT The diversity of Penicillium spp. and associate mycobiota from different virgin forest floor in the Brahmaputra Valley, Assam, India was analyzed. Soil samples were collected from six different undisturbed forest floors together with seasonally flooded forest and also from agricultural fields. Samples were taken from the litter and from three soil core i.e. 0-5, 10-15 and 30-35 cm in depth. The isolated fungal species were identified based on morphological and reproductive characteristics. About 18 common fungal species from different soil samples were isolated dominated by Penicillium sp. and Aspergillus sp. The total fungal population found in the studied sites was 98.87 (±10.7) x103 CFU/g dry soils in all the seasons in top soils. The total CFUs of Penicillium were also highest among the species in all the sites (mean 18.73 ±1.1 x103 CFU/g; n=7) where 27.2 x103 CFU/g in summer and 11.6 x103 CFU/g dry soil in winter. Relative density of Penicillium sp. was also higher among the associated fungi although relative density of Aspergillus (23.83) was higher than Penicillium (19.39). Among the 30 isolates of Penicillium, few species have shown antimicrobial activity against the tested bacterial pathogens. -
207-219 44(4) 01.홍승범R.Fm
한국균학회지 The Korean Journal of Mycology Review 일균일명 체계에 의한 국내 보고 Aspergillus, Penicillium, Talaromyces 속의 종 목록 정리 김현정 1† · 김정선 1† · 천규호 1 · 김대호 2 · 석순자 1 · 홍승범 1* 1국립농업과학원 농업미생물과 미생물은행(KACC), 2강원대학교 산림환경과학대학 산림환경보호학과 Species List of Aspergillus, Penicillium and Talaromyces in Korea, Based on ‘One Fungus One Name’ System 1† 1† 1 2 1 1 Hyeon-Jeong Kim , Jeong-Seon Kim , Kyu-Ho Cheon , Dae-Ho Kim , Soon-Ja Seok and Seung-Beom Hong * 1 Korean Agricultural Culture Collection, Agricultural Microbiology Division National Institute of Agricultural Science, Wanju 55365, Korea 2 Tree Pathology and Mycology Laboratory, Department of Forestry and Environmental Systems, Kangwon National University, Chun- cheon 24341, Korea ABSTRACT : Aspergillus, Penicillium, and their teleomorphic genera have a worldwide distribution and large economic impacts on human life. The names of species in the genera that have been reported in Korea are listed in this study. Fourteen species of Aspergillus, 4 of Eurotium, 8 of Neosartorya, 47 of Penicillium, and 5 of Talaromyces were included in the National List of Species of Korea, Ascomycota in 2015. Based on the taxonomic system of single name nomenclature on ICN (International Code of Nomenclature for algae, fungi, and plants), Aspergillus and its teleomorphic genera such as Neosartorya, Eurotium, and Emericella were named as Aspergillus and Penicillium, and its teleomorphic genera such as Eupenicillium and Talaromyces were named as Penicillium (subgenera Aspergilloides, Furcatum, and Penicillium) and Talaromyces (subgenus Biverticillium) in this study. In total, 77 species were added and the revised list contains 55 spp. of Aspergillus, 82 of Penicillium, and 18 of Talaromyces. -
A Worldwide List of Endophytic Fungi with Notes on Ecology and Diversity
Mycosphere 10(1): 798–1079 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/19 A worldwide list of endophytic fungi with notes on ecology and diversity Rashmi M, Kushveer JS and Sarma VV* Fungal Biotechnology Lab, Department of Biotechnology, School of Life Sciences, Pondicherry University, Kalapet, Pondicherry 605014, Puducherry, India Rashmi M, Kushveer JS, Sarma VV 2019 – A worldwide list of endophytic fungi with notes on ecology and diversity. Mycosphere 10(1), 798–1079, Doi 10.5943/mycosphere/10/1/19 Abstract Endophytic fungi are symptomless internal inhabits of plant tissues. They are implicated in the production of antibiotic and other compounds of therapeutic importance. Ecologically they provide several benefits to plants, including protection from plant pathogens. There have been numerous studies on the biodiversity and ecology of endophytic fungi. Some taxa dominate and occur frequently when compared to others due to adaptations or capabilities to produce different primary and secondary metabolites. It is therefore of interest to examine different fungal species and major taxonomic groups to which these fungi belong for bioactive compound production. In the present paper a list of endophytes based on the available literature is reported. More than 800 genera have been reported worldwide. Dominant genera are Alternaria, Aspergillus, Colletotrichum, Fusarium, Penicillium, and Phoma. Most endophyte studies have been on angiosperms followed by gymnosperms. Among the different substrates, leaf endophytes have been studied and analyzed in more detail when compared to other parts. Most investigations are from Asian countries such as China, India, European countries such as Germany, Spain and the UK in addition to major contributions from Brazil and the USA. -
Phylogeny of Penicillium and the Segregation of Trichocomaceae Into Three Families
available online at www.studiesinmycology.org StudieS in Mycology 70: 1–51. 2011. doi:10.3114/sim.2011.70.01 Phylogeny of Penicillium and the segregation of Trichocomaceae into three families J. Houbraken1,2 and R.A. Samson1 1CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands; 2Microbiology, Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands. *Correspondence: Jos Houbraken, [email protected] Abstract: Species of Trichocomaceae occur commonly and are important to both industry and medicine. They are associated with food spoilage and mycotoxin production and can occur in the indoor environment, causing health hazards by the formation of β-glucans, mycotoxins and surface proteins. Some species are opportunistic pathogens, while others are exploited in biotechnology for the production of enzymes, antibiotics and other products. Penicillium belongs phylogenetically to Trichocomaceae and more than 250 species are currently accepted in this genus. In this study, we investigated the relationship of Penicillium to other genera of Trichocomaceae and studied in detail the phylogeny of the genus itself. In order to study these relationships, partial RPB1, RPB2 (RNA polymerase II genes), Tsr1 (putative ribosome biogenesis protein) and Cct8 (putative chaperonin complex component TCP-1) gene sequences were obtained. The Trichocomaceae are divided in three separate families: Aspergillaceae, Thermoascaceae and Trichocomaceae. The Aspergillaceae are characterised by the formation flask-shaped or cylindrical phialides, asci produced inside cleistothecia or surrounded by Hülle cells and mainly ascospores with a furrow or slit, while the Trichocomaceae are defined by the formation of lanceolate phialides, asci borne within a tuft or layer of loose hyphae and ascospores lacking a slit. -
Plant Biomass-Acting Enzymes Produced by the Ascomycete Fungi Penicillium Subrubescens and Aspergillus Niger and Their Potential in Biotechnological Applications
Division of Microbiology and Biotechnology Department of Food and Environmental Sciences Faculty of Agriculture and Forestry University of Helsinki Plant biomass-acting enzymes produced by the ascomycete fungi Penicillium subrubescens and Aspergillus niger and their potential in biotechnological applications Sadegh Mansouri Doctoral Programme in Microbiology and Biotechnology ACADEMIC DISSERTATION To be presented, with the permission of the Faculty of Agriculture and Forestry of the University of Helsinki, for public examination in leture room B6, Latokartanonkaari 7, on October 27th 2017 at 12 o’clock noon. Helsinki 2017 Supervisors: Docent Kristiina S. Hildén Department of Food and Environmental Sciences University of Helsinki, Finland Docent Miia R. Mäkelä Department of Food and Environmental Sciences University of Helsinki, Finland Docent Pauliina Lankinen Department of Food and Environmental Sciences University of Helsinki, Finland Professor Annele Hatakka Department of Food and Environmental Sciences University of Helsinki, Finland Pre-examiners: Dr. Antti Nyyssölä VTT Technical Research Centre of Finland, Finland Dr. Kaisa Marjamaa VTT Technical Research Centre of Finland, Finland Opponent: Professor Martin Romantschuk Department of Environmental Sciences University of Helsinki, Finland Custos: Professor Maija Tenkanen Department of Food and Environmental Sciences University of Helsinki, Finland Dissertationes Schola Doctoralis Scientiae Circumiectalis, Alimentariae, Biologicae Cover: Penicillium subrubescens FBCC1632 on minimal medium amended with (upper row left to right) apple pectin, inulin, wheat bran, sugar beet pulp, (lower row left to right) citrus pulp, soybean hulls, cotton seed pulp or alfalfa meal (photos: Ronald de Vries). ISSN 2342-5423 (print) ISSN 2342-5431 (online) ISBN 978-951-51-3700-5 (paperback) ISBN 978-951-51-3701-2 (PDF) Unigrafia Helsinki 2017 Dedicated to my sweetheart wife and daughter Abstract Plant biomass contains complex polysaccharides that can be divided into structural and storage polysaccharides. -
Identification and Nomenclature of the Genus Penicillium
Downloaded from orbit.dtu.dk on: Oct 03, 2021 Identification and nomenclature of the genus Penicillium Visagie, C.M.; Houbraken, J.; Frisvad, Jens Christian; Hong, S. B.; Klaassen, C.H.W.; Perrone, G.; Seifert, K.A.; Varga, J.; Yaguchi, T.; Samson, R.A. Published in: Studies in Mycology Link to article, DOI: 10.1016/j.simyco.2014.09.001 Publication date: 2014 Document Version Publisher's PDF, also known as Version of record Link back to DTU Orbit Citation (APA): Visagie, C. M., Houbraken, J., Frisvad, J. C., Hong, S. B., Klaassen, C. H. W., Perrone, G., Seifert, K. A., Varga, J., Yaguchi, T., & Samson, R. A. (2014). Identification and nomenclature of the genus Penicillium. Studies in Mycology, 78, 343-371. https://doi.org/10.1016/j.simyco.2014.09.001 General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. Users may download and print one copy of any publication from the public portal for the purpose of private study or research. You may not further distribute the material or use it for any profit-making activity or commercial gain You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. available online at www.studiesinmycology.org STUDIES IN MYCOLOGY 78: 343–371. -
Depth Dependence of Black Carbon Structure, Elemental And
Soil & Tillage Research 155 (2016) 298–307 Contents lists available at ScienceDirect Soil & Tillage Research journal homepage: www.elsevier.com/locate/still Depth dependence of black carbon structure, elemental and microbiological composition in anthropic Amazonian dark soil a, a a b Marcela C. Pagano *, Jenaina Ribeiro-Soares , Luiz G. Cançado , Newton P.S. Falcão , c c d e Vívian N. Gonçalves , Luiz H. Rosa , Jacqueline A. Takahashi , Carlos A. Achete , a, Ado Jorio * a Departamento de Física, ICEx, Universidade Federal de Minas Gerais, Avenida Antônio Carlos, 6627, Pampulha, 31.270-901 Belo Horizonte, MG, Brazil b Departamento de Ciências Agronômicas, Instituto Nacional de Pesquisas da Amazônia, Manaus, 69011-970 AM, Brazil c Departamento de Microbiologia, ICB, Universidade Federal de Minas Gerais, Avenida Antônio Carlos, 6627, Pampulha, 31.270-901, Belo Horizonte, MG, Brazil d Departamento de Química, ICEx, Universidade Federal de Minas Gerais, Avenida Antônio Carlos, 6627, Pampulha, 31.270-901, Belo Horizonte, MG, Brazil e INMETRO, Xerém, Duque de Caxias, RJ 25250-020, Brazil A R T I C L E I N F O A B S T R A C T Article history: “Terras Pretas de Índio” are anthropic Amazonian soils rich in pyrogenic black carbon, which might be Received 16 June 2015 responsible for the soil long-term stability and high fertility. This black carbon, produced by the Indians Received in revised form 28 August 2015 while handling their residues, became a model material for agriculture and environment. The key Accepted 1 September 2015 question to answer for artificially reproducing the desired agricultural properties of the Terra Preta de Índio is whether the black carbon structure found today in these soils is the same as produced by the Keywords: ancient Indians, or whether its structure results from long-term complex physical, chemical and Amazonian dark soil biological activities in the soil. -
Diversity and Bioactivities of Fungal Endophytes
Duan et al. BMC Microbiology (2019) 19:278 https://doi.org/10.1186/s12866-019-1634-0 RESEARCH ARTICLE Open Access Diversity and bioactivities of fungal endophytes from Distylium chinense, a rare waterlogging tolerant plant endemic to the Three Gorges Reservoir Xiaoxiang Duan1,2, Fangfang Xu1, Dan Qin1, Tiancong Gao1, Weiyun Shen3, Shihao Zuo1, Baohong Yu1, Jieru Xu1, Yajun Peng1 and Jinyan Dong1* Abstract Background: The present study involves diversity and biological activities of the endophytic fungal community from Distylium chinense, a rare waterlogging tolerant plant endemic to the Three Gorges Reservoir. This study has been conducted hypothesizing that the microbial communities in the TGR area would contribute to the host plant tolerating a range of abiotic stress such as summer flooding, infertility, drought, salinity and soil erosion etc., and they may produce new metabolites, which may possess plentiful bioactive property, especially antioxidant activity. Therefore in the current study, the antioxidant, antimicrobial and anticancer activities of 154 endophytes recovered from D. chinense have been investigated. Furthermore, the active metabolites of the most broad-spectrum bioactive strain have also been studied. Results: A total of 154 fungal endophytes were isolated from roots and stems. They were categorized into 30 morphotypes based on cultural characteristics and were affiliated with 27 different taxa. Among these, the most abundant fungal orders included Diaporthales (34.4%) and Botryosphaeriales (30.5%), which were predominantly represented by the species Phomopsis sp. (24.7%) and Neofusicoccum parvum (23.4%). Fermentation extracts were evaluated, screening for antioxidant, antimicrobial and anticancer activities. Among the 154 isolates tested, 99 (64.3%) displayed significant antioxidant activity, 153 (99.4%) exhibited inclusive antimicrobial activity against at least one tested microorganism and 27 (17.5%) showed exclusive anticancer activity against one or more cancer cell lines.