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Apercus Bibliographiques République Algérienne Démocratique et Populaire Ministère de l‘Enseignement Supérieur et de la Recherche Scientifique Université Saad Dahlab Blida Faculté des Sciences Agro-vétérinaires et Biologiques ANNEE 2013 LA BIODIVERSITE DE BARTONELLA DANS LES ARTHROPODES VECTEURS (TIQUES, PUCES, POUX) EN ALGERIE. Mémoire pour le MASTER GENETIQUE ET PHYSIOLOGIE présenté et soutenu publiquement devant le DEPARTEMENT DE BIOLOGIE par Sarah HACENE JURY Présidente: Mme. AMAROUCHE N. Maître de conférence à l‘université de Blida. Promoteur: M. OUMOUNA M. Professeur à l‘université de Médéa. Co-promoteur: M. Bitam I. Docteur de recherche à l‘Institut Pasteur. Examinatrice: Mme . Bouguessa A. Maître de conférences à l‘université de Blida. Examinateur: M. Bessaad A. Maître de conférence à l‘université de Blida. REMERCIEMENTS A Madame la Présidente : Mme AMAROUCHE N. Maître de conférences à l‘Université de Blida Qui nous a fait l’honneur d’accepter la présidence de notre jury Hommage respectueux. A Monsieur M. OUMOUNA Professeur à l‘Université de Médéa Qui nous a fait l’honneur d’encadrer ce Master et de partager son savoir Que sa disponibilité, ses conseils et sa sagesse trouvent dans ce travail L’expression de mon infinie reconnaissance, respect Et de mes sincères remerciements. A Monsieur I. BITAM Maître de recherche à l‘Institut Pasteur d‘Algérie Qui nous a fait l’honneur de nous accueillir au sein de son équipe et surtout d’avoir Partager avec nous son riche sujet et son savoir Mes respectueux remerciements A Madame BOUGUESSA A. et M. BESSAAD A. Maîtres de conférences à l‘Université de Blida Qui nous ont fait l’honneur de participer à notre jury Nos vifs remerciements pour l’intérêt qu’ils ont porté à notre recherche en acceptant D’examiner notre travail et de l’enrichir par leurs propositions. A toutes les personnes du Laboratoire « Ecologie et Systèmes Vectoriels » de l‘Institut Pasteur » d‘El Hamma, pour la sympathie dont ils ont fait preuve et la gentillesse, en particulier Assia et à son soutien actif. Mille mercis. A toutes les personnes de l‘Institut Pasteur d‘El Hamma et de Sidi-Fredj, qui nous ont dépanné et aidé à trouver une solution à nos difficultés et à Monsieur DERAR surtout, responsable à l‘Institut Pasteur, pour l‘accueil sympathique et sa coopération. Un grand merci. A Mouna, Sihem, Aïda, Saîd, Mounir, Ratiba, Sabine, Jan, Diana, Stefano, David, Stefan, Katrin, Matthias, Friederike, Xavier, qui de près ou de loin, ont partagé ces moments de folies, à leur bonne humeur, conseils, soutien et surtout leur disponibilité et présence. Simplement merci. Enfin, …… A MaPas. SOMMAIRE INDEX DES TABLEAUX INDEX DES FIGURES LISTE DES ANNEXES LISTE DES ABREVIATIONS INTRODUCTION ET OBJECTIFS ................................................................................................... 1 RESUME ................................................................................................................................................ 3 APERCUS BIBLIOGRAPHIQUES .................................................................................................... 1 1.1 HISTORIQUE ET ETAT ACTUEL ............................................................................................... 5 1.2 LA FAMILLE DE BARTONELLACEAE ......................................................................................... 8 1.3 GENOME ET EVOLUTION GENOMIQUE .................................................................................. 9 1.3.1 GENOMES DE BARTONELLA ....................................................................................................... 10 1.3.2 PHAGES DE BARTONELLA .......................................................................................................... 11 1.3.3 DIVERSITE GENOMIQUE DANS BARTONELLA ............................................................................ 11 1.4 IDENTIFICATION DES BACTERIES DU GENRE BARTONELLA .................................................... 16 1.4.1 CULTURE ET MICROSCOPIE ....................................................................................................... 16 1.4.2 SEROLOGIE ................................................................................................................................ 17 1.4.3 EXAMEN ANATOMOPATHOLOGIQUE........................................................................................ 18 1.4.4 COMPOSITION EN ACIDES GRAS ET GC % : ................................................................................ 19 1.4.5 IDENTIFICATION PAR LES OUTILS DE LA BIOLOGIE MOLECULAIRE ............................................ 20 1.5 PREVALENCE DE BARTONELLA ET REPARTITION GEOGRAPHIQUE DES ESPECES .................... 26 1.5.1 REPARTITION DES ESPECES, EXPOSITION AUX RISQUES ET VECTORISATION ........................... 29 1.5.2 CONTACT AVEC LES ANIMAUX ET TRANSMISSION DIRECTE ...................................................... 29 1.5.3 CONTACT AVEC LES VECTEURS ET TRANSMISSION INDIRECTE ................................................. 32 1.6 LES VECTEURS ARTHROPODES ............................................................................................ 35 1.7 ETUDE DE LA VECTORISATION ............................................................................................. 39 1.7.1 METHODE D’ETUDE DE LA VECTORISATION : ............................................................................ 41 1.8 PATHOGENIE ET PHYSIOPATHOLOGIE DE BARTONELLA ....................................................... 43 1.9 TRAITEMENT ...................................................................................................................... 51 2 MATERIELS ET METHODES ..................................................................................................... 1 2.1 CARACTERISATION DES REGIONS DE RECOLTE ..................................................................... 60 2.2 PRELEVEMENT DES ARTHROPODES ..................................................................................... 60 2.3 CARACTERISATION DE L’ECHANTILLON ............................................................................... 61 2.4 LA RECHERCHE AUX LABORATOIRES .................................................................................... 61 2.4.1 CRITERES D’IDENTIFICATION DES ARTHROPODES ..................................................................... 61 2.4.2 VERIFICATION DES EXTRACTIONS .............................................................................................. 62 2.4.3 AMPLIFICATION EN CHAINE PAR POLYMERISATION DE L’ADN FTSZ .......................................... 63 3 RESULTATS ................................................................................................................................. 65 3.1 NOMBRE DES ARTHROPODES RECOLTE .............................................................................. 66 3.2 IDENTIFICATION ET TAUX DES ESPECES ADULTES ................................................................. 68 3.3 EXTRACTION DE L’ADN ....................................................................................................... 70 3.3.1 ELECTROPHORESE SUR GEL D’AGAROSE ................................................................................... 70 3.3.2 ESTIMATION DE LA DENSITE OPTIQUE PAR SPECTROPHOTOMETRIE ....................................... 72 3.4 AMPLIFICATION DU FRAGMENT D’ADN SPECIFIQUE AUX BARTONELLA ................................ 72 4 DISCUSSION ................................................................................................................................ 74 4.1 DENSITE DES ARTHROPODE ................................................................................................ 75 4.2 METHODOLOGIE : .............................................................................................................. 80 4.2.1 EXTARCTION DES ADN DES ARTHROPODES PAR LES DEUX TECHNIQUES « KIT MACHEREY NAGEL ET THERMOLYSAT » ................................................................................................................... 80 4.2.2 RECHERCHE DE LA PRESENCE DU GENE FTSZ APRES PCR ET LECTURE DES GELS ........................ 81 4.3 IDENTIFICATION DE BARTONELLA ....................................................................................... 84 CONCLUSION ET PERSPECTIVES .............................................................................................. 92 BIBLIOGRAPHIE .............................................................................................................................. 94 ANNEXE ............................................................................................................................................ 134 INDEX DES TABLEAUX Tableau 1:Programme du thermocycleur, spécifiques aux amorces du gène ftsZ…………26 INDEX DES FIGURES Figure 1: Phylogénie, vecteurs arthropodes et hôtes mammifères du genre Bartonella et la distribution des systèmes de secretion type IV. ....................................................................... 13 Figure 2: Représentation schématique du génome de l'espèce B. grahami .............................. 16 Figure 3: Répartition des arthropodes par région. .................................................................... 66 Figure 4: Répartition des arthropodes par mois. .................................................................... 66 Figure 5: Répartition des arthropodes par espèce hôte. .......................................................... 67 Figure 6: Répartition des arthropodes par sexe. .....................................................................
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