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Amira® 3D Analysis Software for Life Sciences & Biomedical Data

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Amira® 3D Analysis Software for Life Sciences & Biomedical Data DataSheet amira® 3D Analysis Software for Life Sciences & Biomedical Data A single platform for all your visualization needs IMPORT AND EXPORT VISUALIZE • Standard bitmap formats • Orthogonal and oblique slicing • TIFF, BMP, JPEG, PNG, SGI • Volume rendering • Microscopy-specific formats • Surface rendering • Leica, Zeiss, BioRad, Olympus, MRC • Isolines and isosurfaces • Medical image formats • Multichannel imaging • DICOM, Analyze 3D • Image fusion • Neuroscience formats • Vector and tensor visualization • Nifti, HOC, SWC • Support of structured / unstructured grids • Finite element modeling • Molecular visualization • FIDAP, I-DEAS, Fluent • Geometric modeling and CAD • DXF, STL, VRML, Inventor ANALYZE • Flexible raw data import • Volume, area, and distance measurements • Densitometry (gray value statistics) • Filament network statistics PROCESS • Co-localization analysis Component separation, counting and shape analysis • 2D and 3D image filtering • Arithmetic operations on images, vector fields, and unstructured • Surface generation • grids • FEM grid generation Direct integration of the MATLAB® compute engine • Interactive and automatic segmentation • • Interactive and automatic slice alignment • Image registration and morphing • Tensor computation PRESENT • Skeletonization and tracing of neural and vascular networks • Easy-to-use interactive 3D navigation • Deconvolution and Z-drop correction • Automation of complex animations and demonstrations • Powerful scripting interface • Embedded tools for movie generation • Dedicated editors for segmentation, tracing and fusion • Active and passive 3D stereo vision • DTI tractography • Virtual reality navigation tools • Multicore support for many modules • Single and tiled screen display DataSheet amira® 3D Analysis Software for Life Sciences & Biomedical Data Optimizing Amira for your needs The Amira software is organized in functional modules consisting of a base package plus optional add-on packages that allow you to optimize your investment by customizing the product to fit your exact needs. Microscopy Option Skeletonization Option This package is for microscopy users Adds tools for reconstruction, analysis, and including specific readers for microscopy skeletonized representation of neural and data and deconvolution. Allows exploration vascular networks and their quantification of 3D imagery obtained from virtually with regard to parameters such as any microscope. Edit and extract filament segment length and diameter. Supports networks from your microscopy images. skeletonization of very large image stacks. Neuro Option Mesh Option The Neuro Option provides tools for Diffusion Adds tools for the generation of 3D finite Tensor Imaging (DTI) experiments, including element (FE) meshes from segmented tensor visualization, directionally encoded image data. High-quality visualization of color maps (DEC) and fiber tractography. In simulation results using scalar, vector, and addition, this option supports brain perfusion tensor field display modules. analysis on MR or CT time series data. Molecular Option Developer Option Adds advanced tools for the visualization Lets you create new custom components for of molecule models. Combines hardware- visualizing or processing data, file readers accelerated volume rendering with a or writers, using the C++ programming powerful molecule editor and specific tools language. Includes a development wizard for complex molecular visualization. for getting started quickly. Quantification+ Option Very Large Data Option Delivers high-level tools for obtaining and Adds support for the visualization of image visualizing advanced quantitative information data that exceeds the available main on 3D images. This option offers the whole memory of your computer using efficient range of software tools needed to perform out-of-core data management. Extends automated segmentation, convolution, the use of many standard mo- dules such object separation, and to extract statistical as orthogonal and oblique slicing, volume and geometrical information. rendering, and isosurfacing. VR Option Enables the visualization of your data on large Supported Platforms tiled displays or in immersive Virtual Reality (VR) environments. Supports 3D navigation • Windows® XP/Vista/7, 32-bit and 64-bit editions devices as well as fast multithreaded and • Mac OS® X 10.5, 10.6, and 10.7 distributed rendering. • Red Hat Enterprise Linux 5.5 for x86_64 or compatible www.vsg3d.com We serve our world-class customers through offices in the United States, United Amira is a registered trademark of VSG, Visualization Sciences Group. Kingdom, France, Germany and through distributors worldwide. All other products may be trademarks or registered trademarks of their Houston • Boston • San Diego • Bordeaux • London • Düsseldorf respective holders. © 2012 VSG, Visualization Sciences Group. [email protected] .
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