RAB6 and Microtubules Restrict Protein Secretion to Focal Adhesions
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Regulation of Cardiovascular Homeostasis by Autophagy
Georgia State University ScholarWorks @ Georgia State University Chemistry Dissertations Department of Chemistry 12-16-2020 Regulation Of Cardiovascular Homeostasis By Autophagy Jing Mu Georgia State University Follow this and additional works at: https://scholarworks.gsu.edu/chemistry_diss Recommended Citation Mu, Jing, "Regulation Of Cardiovascular Homeostasis By Autophagy." Dissertation, Georgia State University, 2020. https://scholarworks.gsu.edu/chemistry_diss/190 This Dissertation is brought to you for free and open access by the Department of Chemistry at ScholarWorks @ Georgia State University. It has been accepted for inclusion in Chemistry Dissertations by an authorized administrator of ScholarWorks @ Georgia State University. For more information, please contact [email protected]. REGULATION OF CARDIOVASCULAR HOMEOSTASIS BY AUTOPHAGY by JING MU Under the Direction of Ming-hui Zou, MD/PhD ABSTRACT Macroautophagy (hereafter autophagy) is a fundamental cellular process that removes unnecessary or dysfunctional components. It allows the orderly degradation and recycling of cellular components. Mitophagy refers to the selective removal of damaged mitochondria via autophagy pathway. In addition to utilizing core autophagic machinery components, mitophagy exploits a variety of molecules, such as PTEN-induced putative kinase protein 1 (PINK1) and Parkin, to identify and eliminate damaged or superfluous mitochondria. Dysregulation of autophagy and mitophagy contributes to a variety of human disorders, including cardiovascular diseases, such as atherosclerosis and diabetic cardiomyopathy. Vascular smooth muscle cells (VSMCs) are a major component of the vascular media, and are vital for maintaining vessel homeostasis. Migration of VSMCs from the media to intima occurs during the development of atherosclerosis. Although alterations in autophagy activity have been reported in atherosclerosis, further investigation is required to delineate the mechanism by which autophagy regulates microtubule stability and cell migration. -
A High-Resolution Luminescent Assay for Rapid and Continuous Monitoring of Protein Translocation Across Biological Membranes
De Castro Pereira, G., Allen, W., Watkins, D., Buddrus, L., Noone, D., Liu, X., Richardson, A., Collinson, I., & Chacinska, A. (2019). A high- resolution luminescent assay for rapid and continuous monitoring of protein translocation across biological membranes. Journal of Molecular Biology, 431(8), 1689-1699. https://doi.org/10.1016/j.jmb.2019.03.007 Publisher's PDF, also known as Version of record License (if available): CC BY Link to published version (if available): 10.1016/j.jmb.2019.03.007 Link to publication record in Explore Bristol Research PDF-document This is the final published version of the article (version of record). It first appeared online via Elsevier at https://doi.org/10.1016/j.jmb.2019.03.007 . Please refer to any applicable terms of use of the publisher. University of Bristol - Explore Bristol Research General rights This document is made available in accordance with publisher policies. Please cite only the published version using the reference above. Full terms of use are available: http://www.bristol.ac.uk/red/research-policy/pure/user-guides/ebr-terms/ Methods Notes A High-Resolution Luminescent Assay for Rapid and Continuous Monitoring of Protein Translocation across Biological Membranes Gonçalo C. Pereira 1, William J. Allen 1, Daniel W. Watkins 1, Lisa Buddrus 1,2, Dylan Noone 1, Xia Liu 1, Andrew P. Richardson 1, Agnieszka Chacinska 3 and Ian Collinson 1,2 1 - School of Biochemistry, University of Bristol, Bristol, UK 2 - BrisSynBio, University of Bristol, Bristol, UK 3 - Centre of New Technologies, University of Warsaw, S. Banacha 2c, 02-097, Warsaw, Poland Correspondence to Ian Collinson: School of Biochemistry, University Walk, University of Bristol, Bristol BS8 1TD, UK. -
Dissertation Kokes M
Mechanisms of Chlamydia Manipulation of Host Cell Biology Revealed Through Genetic Approaches by Marcela Kokes Department of Molecular Genetics and Microbiology Program in Cell and Molecular Biology Duke University Date:_______________________ Approved: ___________________________ Raphael H. Valdivia, Supervisor ___________________________ Daniel J. Lew ___________________________ Jörn Coers ___________________________ Patrick C. Seed Dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of Molecular Genetics and Microbiology in the Graduate School of Duke University 2015 i v ABSTRACT Mechanisms of Chlamydia Manipulation of Host Cell Biology Revealed Through Genetic Approaches by Marcela Kokes Department of Molecular Genetics and Microbiology Program in Cell and Molecular Biology Duke University Date:_______________________ Approved: ___________________________ Raphael H. Valdivia, Supervisor ___________________________ Daniel J. Lew ___________________________ Jörn Coers ___________________________ Patrick C. Seed An abstract of a dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Department of Molecular Genetics and Microbiology in the Graduate School of Duke University 2015 Copyright by Marcela Kokes 2015 i v Abstract Chlamydia trachomatis is the most common sexually transmitted bacterial pathogen and is the leading cause of preventable blindness worldwide. Chlamydia is particularly intriguing from the perspective of cell biology because it is an obligate intracellular pathogen that manipulates host cellular pathways to ensure its proliferation and survival. This is achieved through a significant remodeling of the host cell’s internal architecture from within a membrane-bound vacuole, termed the inclusion. However, given a previous lack of tools to perform genetic analysis, the mechanisms by which Chlamydia induces host cellular changes remained unclear. -
Wo2015188839a2
Downloaded from orbit.dtu.dk on: Oct 08, 2021 General detection and isolation of specific cells by binding of labeled molecules Pedersen, Henrik; Jakobsen, Søren; Hadrup, Sine Reker; Bentzen, Amalie Kai; Johansen, Kristoffer Haurum Publication date: 2015 Document Version Publisher's PDF, also known as Version of record Link back to DTU Orbit Citation (APA): Pedersen, H., Jakobsen, S., Hadrup, S. R., Bentzen, A. K., & Johansen, K. H. (2015). General detection and isolation of specific cells by binding of labeled molecules. (Patent No. WO2015188839). General rights Copyright and moral rights for the publications made accessible in the public portal are retained by the authors and/or other copyright owners and it is a condition of accessing publications that users recognise and abide by the legal requirements associated with these rights. Users may download and print one copy of any publication from the public portal for the purpose of private study or research. You may not further distribute the material or use it for any profit-making activity or commercial gain You may freely distribute the URL identifying the publication in the public portal If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. (12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (10) International Publication Number (43) International Publication Date WO 2015/188839 -
Chromatography Including Electrophoresis and Other Separation Methods
15SIO 06£ i 36 j 6 VOL. 610 NO.2 JUNE 12, 1992 THIS ISSUE COMPLETES VOL. 610 Bibliography Section JOURNAL OF CHROMATOGRAPHY INCLUDING ELECTROPHORESIS AND OTHER SEPARATION METHODS EDITORS U. A. Th. Brinkman (Amsterdam) R. W. Giese (Boston, MA) J. K. Haken (Kensington, N.S.W.) K. Macek (Prague) L. R. Snyder (Orinda, CA) EDITORS. SYMPOSIUM VOLUMES. E. Heftmann (Orinda. CAl. Z. Deyl (Prague) EDITORIAL BOARD D. W. Armstrong (Rollo. MO) W. A. Aue (Holifo,) P. Botek (8.00) A. A. Boulton (Saskatoon) P. W. Cmr (Minneopolis. MN) N. H. C. Cooke (San Ramon. CAl V. A. Davankov (Moscow) Z. Deyl (Progue) S. Dilli (Kl~nsington. N.S.W.) F. Ern! (Basle) M. B. Evans (Hatfield) J. L. Glojcl, (N. Billerico. MA) G. A. Guiochon (Knoxville, TN) P. R. Haddod (Kensington. N.S.W.) I. M. Hais (Hradec Kralove) W. S. Hancock (San FranCISCo. CAl S. Hjerten (Uppsalo) Cs. Horvinh (New Haven. CT) J. F. K. Huber (Vienna) K.·P. Hupe (Woldbronn) T. W. Hutchens (Houston. IX) J. Jonak (B.oo) P. Jandera (Pardubice) B. L. Kmger (B05<on. MA) J. J. Kirkland (Wilmington. DE) E. sz. Kovats (Lausanne) A. J. P. Mortin (Cambridge) L. W. McLoughlin (Chestnut Hill. MA) E. D. Morgan (Keele) J. O. Pearson (KrJlamazoo, MI) H. Poppe (Amsterdam) F. E. Regnier (West Lafayette. IN) P. G. Righetti (Milan) P. Sclloenmakers (Eindhoven) R. Schwarzenbach (Dubendor!) R. E. Shoup (West Lafayette. IN) A. M. Siouf!i (Mo,seille) D. J. Strydom (Boston. MA) N. Tonaka (Kyoto) S. Terabe (Hyogo) K. K. Unger (Mainz) R. Verpoorle (Leiden) Gy. -
High-Throughput Secretomic Analysis of Single Cells to Assess Functional Cellular Heterogeneity † ⊗ † ⊗ † ‡ † † § ∥ Yao Lu, , Jonathan J
Article pubs.acs.org/ac High-Throughput Secretomic Analysis of Single Cells to Assess Functional Cellular Heterogeneity † ⊗ † ⊗ † ‡ † † § ∥ Yao Lu, , Jonathan J. Chen, , Luye Mu, , Qiong Xue, Yu Wu, Pei-Hsun Wu, Jie Li, ∥ † § † ⊥ Alexander O. Vortmeyer, Kathryn Miller-Jensen, Denis Wirtz, and Rong Fan*, , † Department of Biomedical Engineering, Yale University, New Haven, Connecticut 06520, United States ‡ Department of Electrical Engineering, Yale University, New Haven, Connecticut 06520, United States § Department of Chemical and Biomolecular Engineering and the Johns Hopkins Physical Sciences-Oncology Center, Johns Hopkins University, Baltimore, Maryland 21218, United States ∥ Department of Pathology, Yale School of Medicine, New Haven, Connecticut 06520, United States ⊥ Yale Comprehensive Cancer Center, New Haven, Connecticut 06520, United States *S Supporting Information ABSTRACT: Secreted proteins dictate a range of cellular functions in human health and disease. Because of the high degree of cellular heterogeneity and, more importantly, polyfunctionality of individual cells, there is an unmet need to simultaneously measure an array of proteins from single cells and to rapidly assay a large number of single cells (more than 1000) in parallel. We describe a simple bioanalytical assay platform consisting of a large array of subnanoliter micro- chambers integrated with high-density antibody barcode microarrays for highly multiplexed protein detection from over a thousand single cells in parallel. This platform has been tested for both cell lines and complex biological samples such as primary cells from patients. We observed distinct heterogeneity among the single cell secretomic signatures that, for the first time, can be directly correlated to the cells’ physical behavior such as migration. Compared to the state-of-the-art protein secretion assay such as ELISpot and emerging microtechnology-enabled assays, our approach offers both high throughput and high multiplicity. -
Rho Guanosine Triphosphatase Mediates the Selective Stabilization of Microtubules Induced by Lysophosphatidic Acid Tiffani A
Rho Guanosine Triphosphatase Mediates the Selective Stabilization of Microtubules Induced by Lysophosphatidic Acid Tiffani A. Cook,*‡ Takayuki Nagasaki,* and Gregg G. Gundersen*i *Department of Anatomy and Cell Biology, ‡Integrated Program in Cellular, Molecular, and Biophysical Studies, and iDepartment of Pathology, Columbia University, New York Abstract. The asymmetric distribution of stable, post- MTs and, in wound-edge cells, these stable MTs were translationally modified microtubules (MTs) contrib- appropriately oriented toward the leading edge of the utes to the polarization of many cell types, yet the fac- cell. LPA had little effect on individual parameters of tors controlling the formation of these MTs are not MT dynamics, but did induce long states of pause in a known. We have found that lysophosphatidic acid subset of MTs near the edge of the cell. Rho stimula- (LPA) is a major serum factor responsible for rapidly tion of MT stability was independent of actin stress fi- Downloaded from generating stable, detyrosinated (Glu) MTs in serum- ber formation. These results identify rho as a novel reg- starved 3T3 cells. Using C3 toxin and val14 rho we ulator of the MT cytoskeleton that selectively stabilizes showed that rho was both necessary and sufficient for MTs during cell polarization by acting as a switch be- the induction of Glu MTs by LPA and serum. Unlike tween dynamic and stable states of MTs rather than as previously described factors that induce MT stability, a modulator of MT assembly and disassembly. rho induced the stabilization of only a subset of the jcb.rupress.org n many cells there are at least two populations of mi- et al., 1984, 1987; Gundersen and Bulinski, 1986; Webster crotubules (MTs)1 distinguishable by their rates of et al., 1987; Kreis, 1987) and/or acetylated tubulin (Pip- on November 19, 2017 I turnover. -
A Protein Secreted by the Salmonella Type III Secretion System Controls
RESEARCH ARTICLE A protein secreted by the Salmonella type III secretion system controls needle filament assembly Junya Kato1†, Supratim Dey2†, Jose E Soto1†, Carmen Butan1, Mason C Wilkinson2, Roberto N De Guzman2*, Jorge E Galan1* 1Department of Microbial Pathogenesis, Yale University School of Medicine, New Haven, United States; 2Department of Molecular Biosciences, University of Kansas, Lawrence, United States Abstract Type III protein secretion systems (T3SS) are encoded by several pathogenic or symbiotic bacteria. The central component of this nanomachine is the needle complex. Here we show in a Salmonella Typhimurium T3SS that assembly of the needle filament of this structure requires OrgC, a protein encoded within the T3SS gene cluster. Absence of OrgC results in significantly reduced number of needle substructures but does not affect needle length. We show that OrgC is secreted by the T3SS and that exogenous addition of OrgC can complement a DorgC mutation. We also show that OrgC interacts with the needle filament subunit PrgI and accelerates its polymerization into filaments in vitro. The structure of OrgC shows a novel fold with a shared topology with a domain from flagellar capping proteins. These findings identify a novel component of T3SS and provide new insight into the assembly of the type III secretion machine. DOI: https://doi.org/10.7554/eLife.35886.001 *For correspondence: [email protected] (RNDG); [email protected] (JEG) Introduction †These authors contributed Type III protein secretion systems (T3SSs) are highly conserved molecular machines encoded by equally to this work many gram-negative bacteria pathogenic or symbiotic to animals, plants, or insects (Gala´n et al., Competing interests: The 2014; Deng et al., 2017; Notti and Stebbins, 2016). -
Supporting Information
Supporting Information Zhang et al. 10.1073/pnas.0811715106 SI Materials and Methods In Vitro Insulin Secretion Assay. INS-1 832/13 cells were seeded in Physical Studies. All blood glucose measurements were deter- 12-well culture plates after 72 h of siRNA treatment. After mined on whole venous blood by using an automated glucose washing twice with PBS, cells were starved for2hinstandard monitor (One Touch Basic, Lifescan) (1). Glucose tolerance assay buffer (SAB) (4). Subsequently, the medium was replaced tests were performed on mice after 16 h of fasting. Mice were by SAB containing 3 mM glucose (for basal secretion) or high injected intraperitoneally (i.p.) with D-glucose (2 g/kg of body glucose (15 mM) to measure insulin secretion during a 2-h weight) and blood was obtained at indicated time points. For incubation. Supernatants were removed to measure secreted insulin release, glucose (3 g/kg of body weight) was injected i.p., insulin, and insulin secretion results were normalized to cell and blood was collected at indicated time points (2). Serum number. The amount of insulin secretion was assayed by using an insulin levels were measured by ELISA with a rat insulin RIA kit (Linco Research). standard (Crystal Chem) (3). Statistical analysis was performed using a 2-tailed unpaired t test. ATP Determination. After 72 h of siRNA treatment, cells were starved and treated with low or high glucose and then lysed in Islet Isolation and Insulin Content Measurement. Mice were killed, lysis buffer (10 mM Tris, pH 7.5, 0.1 M NaCl, 1 mM EDTA, and the common bile duct was cannulated with a 27-mm needle in the 0.01% Triton X-100). -
Highly Multiplexed Profiling of Single-Cell Effector Functions Reveals
Highly multiplexed profiling of single-cell effector PNAS PLUS functions reveals deep functional heterogeneity in response to pathogenic ligands Yao Lua,1, Qiong Xuea,1, Markus R. Eiselea,b, Endah S. Sulistijoa, Kara Browerc, Lin Hana, El-ad David Amird, Dana Pe’erd, Kathryn Miller-Jensena,e,f,2, and Rong Fana,f,g,2 aDepartment of Biomedical Engineering, Yale University, New Haven, CT 06520; bInstitute for System Dynamics, University of Stuttgart, D-70563 Stuttgart, Germany; cIsoPlexis, New Haven, CT 06511; dDepartment of Biological Sciences, Columbia University, New York, NY 10027; eDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT 06520; fYale Comprehensive Cancer Center, New Haven, CT 06520; and gYale Stem Cell Center, Yale School of Medicine, New Haven, CT 06520 Edited by Garry P. Nolan, Stanford University, Stanford, CA, and accepted by the Editorial Board January 12, 2015 (received for review September 1, 2014) Despite recent advances in single-cell genomic, transcriptional, functional heterogeneity has not been fully delineated due in part and mass-cytometric profiling, it remains a challenge to collect to the lack of technologies for quantifying all immune effector highly multiplexed measurements of secreted proteins from single functions at the level of single cells. cells for comprehensive analysis of functional states. Herein, we Previously, multiplex profiling of effector proteins in single cells combine spatial and spectral encoding with polydimethylsiloxane was limited (less than or equal to four) because of spectral overlap, (PDMS) microchambers for codetection of 42 immune effector for example, in a FLUOROSpot assay (8) or a nanowell-based proteins secreted from single cells, representing the highest multi- microengraving assay (9). -
The Long Non-Coding RNA βfaar Regulates Islet β-Cell Function And
ARTICLE https://doi.org/10.1038/s41467-021-24302-6 OPEN The long non-coding RNA βFaar regulates islet β-cell function and survival during obesity in mice Fangfang Zhang1,5, Yue Yang1,5, Xi Chen1, Yue Liu1, Qianxing Hu1, Bin Huang1, Yuhong Liu1, Yi Pan1, ✉ ✉ ✉ Yanfeng Zhang1, Dechen Liu2, Rui Liang3, Guoqing Li2,4, Qiong Wei2,4 , Ling Li2,4 & Liang Jin 1 Despite obesity being a predisposing factor for pancreatic β-cell dysfunction and loss, the mechanisms underlying its negative effect on insulin-secreting cells remain poorly under- 1234567890():,; stood. In this study, we identify an islet-enriched long non-coding RNA (lncRNA), which we name β-cell function and apoptosis regulator (βFaar). βFaar is dramatically downregulated in the islets of the obese mice, and a low level of βFaar is necessary for the development of obesity-associated β-cell dysfunction and apoptosis. Mechanistically, βFaar promote the synthesis and secretion of insulin by upregulating islet-specific genes Ins2, NeuroD1, and Creb1 through sponging miR-138-5p. In addition, using quantitative mass spectrometry, we identify TRAF3IP2 and SMURF1 as interacting proteins that are specifically associated with βFaar.We demonstrate that SMURF1 ubiquitin ligase activity is essential for TRAF3IP2 ubiquitination and activation of NF-κB-mediate β-cell apoptosis. Our experiments provide direct evidence that dysregulated βFaar contributes to the development of obesity-induced β-cell injury and apoptosis. 1 State Key Laboratory of Natural Medicines, Jiangsu Key Laboratory of Druggability of Biopharmaceuticals, School of Life Science and Technology, China Pharmaceutical University, Nanjing, Jiangsu Province, China. 2 Department of Endocrinology, Zhongda Hospital, School of Medicine, Southeast University, Nanjing, Jiangsu Province, China. -
Expression and Functional Evaluation of Exendin 4 Fused to Cholera Toxin B Subunit in Tobacco Chloroplast to Treat Type 2 Diabetes
University of Central Florida STARS Electronic Theses and Dissertations, 2004-2019 2011 Expression And Functional Evaluation Of Exendin 4 Fused To Cholera Toxin B Subunit In Tobacco Chloroplast To Treat Type 2 Diabetes Ramya Nityanandam University of Central Florida Part of the Biotechnology Commons, and the Molecular Biology Commons Find similar works at: https://stars.library.ucf.edu/etd University of Central Florida Libraries http://library.ucf.edu This Masters Thesis (Open Access) is brought to you for free and open access by STARS. It has been accepted for inclusion in Electronic Theses and Dissertations, 2004-2019 by an authorized administrator of STARS. For more information, please contact [email protected]. STARS Citation Nityanandam, Ramya, "Expression And Functional Evaluation Of Exendin 4 Fused To Cholera Toxin B Subunit In Tobacco Chloroplast To Treat Type 2 Diabetes" (2011). Electronic Theses and Dissertations, 2004-2019. 1786. https://stars.library.ucf.edu/etd/1786 EXPRESSION AND FUNCTIONAL EVALUATION OF EXENDIN 4 FUSED TO CHOLERA TOXIN B SUBUNIT IN TOBACCO CHLOROPLAST TO TREAT TYPE 2 DIABETES by RAMYA NITYANANDAM B.TECH, Anna University, 2009 A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science in the Department of Burnett School of Biomedical Sciences in the College of Medicine at the University of Central Florida Orlando, Florida Fall Term 2011 Major Professor: Dr.Henry Daniell © 2011 Ramya Nityanandam ii ABSTRACT The prevalence of type 2 diabetes has been steadily increasing around the globe. Glucagon like peptide (GLP-1), a powerful incretin increases insulin secretion in a glucose dependent manner.