Nuclear Division in Nine Species of Small Free-Living Amoebae and Its Bearing on the Classification of the Order Amoebida
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Ptolemeba N. Gen., a Novel Genus of Hartmannellid Amoebae (Tubulinea, Amoebozoa); with an Emphasis on the Taxonomy of Saccamoeba
The Journal of Published by the International Society of Eukaryotic Microbiology Protistologists Journal of Eukaryotic Microbiology ISSN 1066-5234 ORIGINAL ARTICLE Ptolemeba n. gen., a Novel Genus of Hartmannellid Amoebae (Tubulinea, Amoebozoa); with an Emphasis on the Taxonomy of Saccamoeba Pamela M. Watsona, Stephanie C. Sorrella & Matthew W. Browna,b a Department of Biological Sciences, Mississippi State University, Mississippi State, Mississippi, 39762 b Institute for Genomics, Biocomputing & Biotechnology, Mississippi State University, Mississippi State, Mississippi, 39762 Keywords ABSTRACT 18S rRNA; amoeba; amoeboid; Cashia; cristae; freshwater amoebae; Hartmannella; Hartmannellid amoebae are an unnatural assemblage of amoeboid organisms mitochondrial morphology; SSU rDNA; SSU that are morphologically difficult to discern from one another. In molecular phy- rRNA; terrestrial amoebae; tubulinid. logenetic trees of the nuclear-encoded small subunit rDNA, they occupy at least five lineages within Tubulinea, a well-supported clade in Amoebozoa. The Correspondence polyphyletic nature of the hartmannellids has led to many taxonomic problems, M.W. Brown, Department of Biological in particular paraphyletic genera. Recent taxonomic revisions have alleviated Sciences, Mississippi State University, some of the problems. However, the genus Saccamoeba is paraphyletic and is Mississippi State, MS 39762, USA still in need of revision as it currently occupies two distinct lineages. Here, we Telephone number: +1 662-325-2406; report a new clade on the tree of Tubulinea, which we infer represents a novel FAX number: +1 662-325-7939; genus that we name Ptolemeba n. gen. This genus subsumes a clade of hart- e-mail: [email protected] mannellid amoebae that were previously considered in the genus Saccamoeba, but whose mitochondrial morphology is distinct from Saccamoeba. -
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016 April 1981 Revised, May 1982 2nd revision, April 1983 3rd revision, December 1999 4th revision, May 2011 Prepared for U.S. Department of Commerce Ohio Department of Natural Resources National Oceanic and Atmospheric Administration Division of Wildlife Office of Ocean and Coastal Resource Management 2045 Morse Road, Bldg. G Estuarine Reserves Division Columbus, Ohio 1305 East West Highway 43229-6693 Silver Spring, MD 20910 This management plan has been developed in accordance with NOAA regulations, including all provisions for public involvement. It is consistent with the congressional intent of Section 315 of the Coastal Zone Management Act of 1972, as amended, and the provisions of the Ohio Coastal Management Program. OWC NERR Management Plan, 2011 - 2016 Acknowledgements This management plan was prepared by the staff and Advisory Council of the Old Woman Creek National Estuarine Research Reserve (OWC NERR), in collaboration with the Ohio Department of Natural Resources-Division of Wildlife. Participants in the planning process included: Manager, Frank Lopez; Research Coordinator, Dr. David Klarer; Coastal Training Program Coordinator, Heather Elmer; Education Coordinator, Ann Keefe; Education Specialist Phoebe Van Zoest; and Office Assistant, Gloria Pasterak. Other Reserve staff including Dick Boyer and Marje Bernhardt contributed their expertise to numerous planning meetings. The Reserve is grateful for the input and recommendations provided by members of the Old Woman Creek NERR Advisory Council. The Reserve is appreciative of the review, guidance, and council of Division of Wildlife Executive Administrator Dave Scott and the mapping expertise of Keith Lott and the late Steve Barry. -
New Data on the Cyst Structure of Hartmannella Vermiformis Page, 1967 (Lobosea, Gymnamoebia)
Protistology 1 (2), 82-85 (1999) Protistology July, 1999 New data on the cyst structure of Hartmannella vermiformis Page, 1967 (Lobosea, Gymnamoebia) Alexey V. Smirnov a and Rolf Michel b a Dept. of Invert ebrate Zoology, Fac. of Biology & Soil Sci., St. Petersburg State University, Russia; b Zentrales Institut des Sanitatsdienstes der Bundeswehr Koblenz, Laborabteilung I - Medizin Mikrobiologie, Germany Summary Isolates of widely distributed amoeba species - Hartmannella vermiformis differs in the details of cyst structure. This is unusual for gymnamoebae and is important in course of modern approaches to amoebae systematic. Cysts of the isolate of this species, described here, have regular separation of the cyst wall into endocyst and ectocyst, in contrast with the “original” isolates, described by F.C. Page. Fine structure of H. vermiformis cysts is studied and discussed. Key words: amoebae, Lobosea, Gymnamoebia, Hartmannella, cyst, ultrastructure Introduction portable water-treatment plant near Bonn (Germany). Clonal cultures were maintained on NN-agar plates (Page, Hartmannella vermiformis was described by Page 1988) provided with Enterobacter cloacae as nutrient bac- (1967), and re-investigated twice (Page, 1974, 1985). Tro- teria. All measurements and photographs were made from phozoites of H. vermiformis are very characteristic, and alive amoebae moving on glass surface. identification of this species does not seem to be a prob- For TEM amoebae were fixed for 1h in 3% glutaral- lem. However, cyst structure in this species varies from dehyde with cacodylate buffer (pH 7.2), washed twice in strain to strain. Cyst are double-walled, but ectocyst and the same buffer, postfixed for 1h in 1% osmium tetroxide, endocyst may be so closely apposed in some strains, that dehydrated in ethanol series, and embedded in Spurr resin. -
A Revised Classification of Naked Lobose Amoebae (Amoebozoa
Protist, Vol. 162, 545–570, October 2011 http://www.elsevier.de/protis Published online date 28 July 2011 PROTIST NEWS A Revised Classification of Naked Lobose Amoebae (Amoebozoa: Lobosa) Introduction together constitute the amoebozoan subphy- lum Lobosa, which never have cilia or flagella, Molecular evidence and an associated reevaluation whereas Variosea (as here revised) together with of morphology have recently considerably revised Mycetozoa and Archamoebea are now grouped our views on relationships among the higher-level as the subphylum Conosa, whose constituent groups of amoebae. First of all, establishing the lineages either have cilia or flagella or have lost phylum Amoebozoa grouped all lobose amoe- them secondarily (Cavalier-Smith 1998, 2009). boid protists, whether naked or testate, aerobic Figure 1 is a schematic tree showing amoebozoan or anaerobic, with the Mycetozoa and Archamoe- relationships deduced from both morphology and bea (Cavalier-Smith 1998), and separated them DNA sequences. from both the heterolobosean amoebae (Page and The first attempt to construct a congruent molec- Blanton 1985), now belonging in the phylum Per- ular and morphological system of Amoebozoa by colozoa - Cavalier-Smith and Nikolaev (2008), and Cavalier-Smith et al. (2004) was limited by the the filose amoebae that belong in other phyla lack of molecular data for many amoeboid taxa, (notably Cercozoa: Bass et al. 2009a; Howe et al. which were therefore classified solely on morpho- 2011). logical evidence. Smirnov et al. (2005) suggested The phylum Amoebozoa consists of naked and another system for naked lobose amoebae only; testate lobose amoebae (e.g. Amoeba, Vannella, this left taxa with no molecular data incertae sedis, Hartmannella, Acanthamoeba, Arcella, Difflugia), which limited its utility. -
Protist Phylogeny and the High-Level Classification of Protozoa
Europ. J. Protistol. 39, 338–348 (2003) © Urban & Fischer Verlag http://www.urbanfischer.de/journals/ejp Protist phylogeny and the high-level classification of Protozoa Thomas Cavalier-Smith Department of Zoology, University of Oxford, South Parks Road, Oxford, OX1 3PS, UK; E-mail: [email protected] Received 1 September 2003; 29 September 2003. Accepted: 29 September 2003 Protist large-scale phylogeny is briefly reviewed and a revised higher classification of the kingdom Pro- tozoa into 11 phyla presented. Complementary gene fusions reveal a fundamental bifurcation among eu- karyotes between two major clades: the ancestrally uniciliate (often unicentriolar) unikonts and the an- cestrally biciliate bikonts, which undergo ciliary transformation by converting a younger anterior cilium into a dissimilar older posterior cilium. Unikonts comprise the ancestrally unikont protozoan phylum Amoebozoa and the opisthokonts (kingdom Animalia, phylum Choanozoa, their sisters or ancestors; and kingdom Fungi). They share a derived triple-gene fusion, absent from bikonts. Bikonts contrastingly share a derived gene fusion between dihydrofolate reductase and thymidylate synthase and include plants and all other protists, comprising the protozoan infrakingdoms Rhizaria [phyla Cercozoa and Re- taria (Radiozoa, Foraminifera)] and Excavata (phyla Loukozoa, Metamonada, Euglenozoa, Percolozoa), plus the kingdom Plantae [Viridaeplantae, Rhodophyta (sisters); Glaucophyta], the chromalveolate clade, and the protozoan phylum Apusozoa (Thecomonadea, Diphylleida). Chromalveolates comprise kingdom Chromista (Cryptista, Heterokonta, Haptophyta) and the protozoan infrakingdom Alveolata [phyla Cilio- phora and Miozoa (= Protalveolata, Dinozoa, Apicomplexa)], which diverged from a common ancestor that enslaved a red alga and evolved novel plastid protein-targeting machinery via the host rough ER and the enslaved algal plasma membrane (periplastid membrane). -
Paramoeba Pemaquidensis (Sarcomastigophora: Paramoebidae) Infestation of the Gills of Coho Salmon Oncorhynchus Kisutch Reared in Sea Water
Vol. 5: 163-169, 1988 DISEASES OF AQUATIC ORGANISMS Published December 2 Dis. aquat. Org. Paramoeba pemaquidensis (Sarcomastigophora: Paramoebidae) infestation of the gills of coho salmon Oncorhynchus kisutch reared in sea water Michael L. ~ent'l*,T. K. Sawyer2,R. P. ~edrick~ 'Battelle Marine Research Laboratory, 439 West Sequim Bay Rd, Sequim, Washington 98382, USA '~esconAssociates, Inc., Box 206, Turtle Cove, Royal Oak, Maryland 21662, USA 3~epartmentof Medicine, School of Veterinary Medicine, University of California, Davis, California 95616, USA ABSTRACT: Gill disease associated with Paramoeba pemaquidensis Page 1970 (Sarcomastigophora: Paramoebidae) infestations was observed in coho salmon Oncorhynchus lasutch reared in sea water Fish reared in net pens in Washington and in land-based tanks in California were affected. Approxi- mately 25 O/O mortality was observed in the net pens in 1985, and the disease recurred in 1986 and 1987. Amoeba infesting the gill surfaces elicited prominent epithelia1 hyperplasia. Typical of Paramoeba spp., the parasite had a Feulgen positive parasome (Nebenkorper) adjacent to the nucleus and floatlng and transitional forms had digitiform pseudopodia. We have established cultures of the organism from coho gills; it grows rapidly on Malt-yeast extract sea water medium supplemented with Klebsiella bacteria. Ultrastructural characteristics and nuclear, parasome and overall size of the organism in study indicated it is most closely related to the free-living paramoeba P. pemaquidensis. The plasmalemma of the amoeba from coho gills has surface filaments. Measurements (in pm) of the amoeba under various conditions are as follows: transitional forms directly from gills 28 (24 to 30),locomotive forms from liquid culture 21 X 17 (15 to 35 X 11 to 25), and locomotive forms from agar culture 25 X 20 (15 to 38 X 15 to 25). -
Worms, Germs, and Other Symbionts from the Northern Gulf of Mexico CRCDU7M COPY Sea Grant Depositor
h ' '' f MASGC-B-78-001 c. 3 A MARINE MALADIES? Worms, Germs, and Other Symbionts From the Northern Gulf of Mexico CRCDU7M COPY Sea Grant Depositor NATIONAL SEA GRANT DEPOSITORY \ PELL LIBRARY BUILDING URI NA8RAGANSETT BAY CAMPUS % NARRAGANSETT. Rl 02882 Robin M. Overstreet r ii MISSISSIPPI—ALABAMA SEA GRANT CONSORTIUM MASGP—78—021 MARINE MALADIES? Worms, Germs, and Other Symbionts From the Northern Gulf of Mexico by Robin M. Overstreet Gulf Coast Research Laboratory Ocean Springs, Mississippi 39564 This study was conducted in cooperation with the U.S. Department of Commerce, NOAA, Office of Sea Grant, under Grant No. 04-7-158-44017 and National Marine Fisheries Service, under PL 88-309, Project No. 2-262-R. TheMississippi-AlabamaSea Grant Consortium furnish ed all of the publication costs. The U.S. Government is authorized to produceand distribute reprints for governmental purposes notwithstanding any copyright notation that may appear hereon. Copyright© 1978by Mississippi-Alabama Sea Gram Consortium and R.M. Overstrect All rights reserved. No pari of this book may be reproduced in any manner without permission from the author. Primed by Blossman Printing, Inc.. Ocean Springs, Mississippi CONTENTS PREFACE 1 INTRODUCTION TO SYMBIOSIS 2 INVERTEBRATES AS HOSTS 5 THE AMERICAN OYSTER 5 Public Health Aspects 6 Dcrmo 7 Other Symbionts and Diseases 8 Shell-Burrowing Symbionts II Fouling Organisms and Predators 13 THE BLUE CRAB 15 Protozoans and Microbes 15 Mclazoans and their I lypeiparasites 18 Misiellaneous Microbes and Protozoans 25 PENAEID -
The Microbial Food Web of the Coastal Southern Baltic Sea As Influenced by Wind-Induced Sediment Resuspension
THE MICROBIAL FOOD WEB OF THE COASTAL SOUTHERN BALTIC SEA AS INFLUENCED BY WIND-INDUCED SEDIMENT RESUSPENSION I n a u g u r a l - D i s s e r t a t i o n zur Erlangung des Doktorgrades der Mathematisch-Naturwissenschaftlichen Fakultät der Universität zu Köln vorgelegt von TOBIAS GARSTECKI aus Magdeburg Köln, 2001 Berichterstatter: Prof. Dr. STEPHEN A. WICKHAM Prof. Dr. HARTMUT ARNDT Tag der letzten mündlichen Prüfung: 29.06.2001 Inhaltsverzeichnis Angabe von verwendeten Fremddaten .............................................. 5 Abkürzungsverzeichnis ..................................................................... 6 1. Einleitung ........................................................................................................ 7 1.1. Begründung der Fragestellung ......................................................... 7 1.2. Herangehensweise ..................................................................... 11 2. A comparison of benthic and planktonic heterotrophic protistan community structure in shallow inlets of the Southern Baltic Sea ........… 13 2.1. Summary ................... ........................................................................ 13 2.2. Introduction ................................................................................. 14 2.3. Materials and Methods ..................................................................... 15 2.3.1. Study sites ..................................................................... 15 2.3.2. Sampling design ........................................................ -
The Classification of Lower Organisms
The Classification of Lower Organisms Ernst Hkinrich Haickei, in 1874 From Rolschc (1906). By permission of Macrae Smith Company. C f3 The Classification of LOWER ORGANISMS By HERBERT FAULKNER COPELAND \ PACIFIC ^.,^,kfi^..^ BOOKS PALO ALTO, CALIFORNIA Copyright 1956 by Herbert F. Copeland Library of Congress Catalog Card Number 56-7944 Published by PACIFIC BOOKS Palo Alto, California Printed and bound in the United States of America CONTENTS Chapter Page I. Introduction 1 II. An Essay on Nomenclature 6 III. Kingdom Mychota 12 Phylum Archezoa 17 Class 1. Schizophyta 18 Order 1. Schizosporea 18 Order 2. Actinomycetalea 24 Order 3. Caulobacterialea 25 Class 2. Myxoschizomycetes 27 Order 1. Myxobactralea 27 Order 2. Spirochaetalea 28 Class 3. Archiplastidea 29 Order 1. Rhodobacteria 31 Order 2. Sphaerotilalea 33 Order 3. Coccogonea 33 Order 4. Gloiophycea 33 IV. Kingdom Protoctista 37 V. Phylum Rhodophyta 40 Class 1. Bangialea 41 Order Bangiacea 41 Class 2. Heterocarpea 44 Order 1. Cryptospermea 47 Order 2. Sphaerococcoidea 47 Order 3. Gelidialea 49 Order 4. Furccllariea 50 Order 5. Coeloblastea 51 Order 6. Floridea 51 VI. Phylum Phaeophyta 53 Class 1. Heterokonta 55 Order 1. Ochromonadalea 57 Order 2. Silicoflagellata 61 Order 3. Vaucheriacea 63 Order 4. Choanoflagellata 67 Order 5. Hyphochytrialea 69 Class 2. Bacillariacea 69 Order 1. Disciformia 73 Order 2. Diatomea 74 Class 3. Oomycetes 76 Order 1. Saprolegnina 77 Order 2. Peronosporina 80 Order 3. Lagenidialea 81 Class 4. Melanophycea 82 Order 1 . Phaeozoosporea 86 Order 2. Sphacelarialea 86 Order 3. Dictyotea 86 Order 4. Sporochnoidea 87 V ly Chapter Page Orders. Cutlerialea 88 Order 6. -
This Thesis Has Been Submitted in Fulfilment of the Requirements for a Postgraduate Degree (E.G
This thesis has been submitted in fulfilment of the requirements for a postgraduate degree (e.g. PhD, MPhil, DClinPsychol) at the University of Edinburgh. Please note the following terms and conditions of use: This work is protected by copyright and other intellectual property rights, which are retained by the thesis author, unless otherwise stated. A copy can be downloaded for personal non-commercial research or study, without prior permission or charge. This thesis cannot be reproduced or quoted extensively from without first obtaining permission in writing from the author. The content must not be changed in any way or sold commercially in any format or medium without the formal permission of the author. When referring to this work, full bibliographic details including the author, title, awarding institution and date of the thesis must be given. Protein secretion and encystation in Acanthamoeba Alvaro de Obeso Fernández del Valle Doctor of Philosophy The University of Edinburgh 2018 Abstract Free-living amoebae (FLA) are protists of ubiquitous distribution characterised by their changing morphology and their crawling movements. They have no common phylogenetic origin but can be found in most protist evolutionary branches. Acanthamoeba is a common FLA that can be found worldwide and is capable of infecting humans. The main disease is a life altering infection of the cornea named Acanthamoeba keratitis. Additionally, Acanthamoeba has a close relationship to bacteria. Acanthamoeba feeds on bacteria. At the same time, some bacteria have adapted to survive inside Acanthamoeba and use it as transport or protection to increase survival. When conditions are adverse, Acanthamoeba is capable of differentiating into a protective cyst. -
Granulomatous Meningoencephalitis Balamuthia Mandrillaris in Peru: Infection of the Skin and Central Nervous System
SMGr up Granulomatous Meningoencephalitis Balamuthia mandrillaris in Peru: Infection of the Skin and Central Nervous System A. Martín Cabello-Vílchez MSc, PhD* Universidad Peruana Cayetano Heredia, Instituto de Medicina Tropical “Alexander von Humboldt” *Corresponding author: Instituto de Medicina Tropical “Alexander von Humboldt”, Av. Honorio Delgado Nº430, San A. Martín Cabello-Vílchez, Universidad Peruana Cayetano Heredia, MartínPublished de Porras, Date: Lima-Perú, Tel: +511 989767619, Email: [email protected] February 16, 2017 ABSTRACT Balamuthia mandrillaris is an emerging cause of sub acute granulomatous amebic encephalitis (GAE) or Balamuthia mandrillaris amoebic infection (BMAI). It is an emerging pathogen causing skin lesions as well as CNS involvement with a fatal outcome if untreated. The infection has been described more commonly in inmunocompetent individuals, mostly males, many children. All continents have reported the disease, although a majority of cases are seen in North and South America, especially Peru. Balamuthia mandrillaris is a free living amoeba that can be isolated from soil. In published reported cases from North America, most patients will debut with neurological symptoms, where as in countries like Peru, a skin lesion will precede neurological symptoms. The classical cutaneous lesionis a plaque, mostly located on face, knee or other body parts. Diagnosis requires a specialized laboratory and clinical experience. This Amoebic encephalitis may be erroneously interpreted as a cerebral neoplasm, causing delay in the management of the infection. Thediagnosis of this infection has proven to be difficult and is usually made post-mortem but in Peru many cases were pre-morten. Despite case fatality rates as high as > 98%, some experimental therapies have shown protozoal therapy with macrolides and phenothiazines. -
Vita: OR Anderson
CURRICULUM VITA O. Roger Anderson [Updated May 2020] BIRTH DATE: August 4, 1937 OCCUPATION: Microbial Physiological Ecologist, Biologist, and Educator PROFESSIONAL RANK: Professor of Natural Sciences, Columbia University T. C., 1964-present Teachers College ; Department Chairman, 1974-1980, 1993-1996, 2000-2017 Senior Research Scientist (Adj.), Biology, 1967-present Lamont-Doherty Earth Observatory of Columbia University Faculty Member at Large, Columbia University Graduate School of Arts and Sciences. 1993-present DEGREES: Bachelor of Arts (Botany) Washington University, St. Louis 1959 Master of Arts (Biological Education) Washington University 1961 Doctorate (Biology and Education) Washington University 1964 PROFESSIONAL EXPERIENCE (TEACHING): 1963-64 Washington University, St. Louis 1964-67 Assistant Professor of Natural Sciences Columbia University, Teachers College 1968-70 Associate Professor of Natural Sciences Columbia University, Teachers College 1971- Professor of Natural Sciences Columbia University, Teachers College 1992-1993 College Research Coordinator, Teachers College. 1993-1996 Associate Director, Division of Instruction, T. C. OFFICES IN NATIONAL AND INTERNATIONAL ORGANIZATIONS: 1976 President, National Association for Res. Science Teaching (International) 1993-95 President, Columbia University Chapter Sigma Xi Honorary Scientific Society (National) 1995 President, International Society of Protistology (International) ----------------------------------------------------------------------------------------------------