Western Society of Naturalists ~ 2017
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The Fishing and Illegal Trade of the Angelshark DNA Barcoding
Fisheries Research 206 (2018) 193–197 Contents lists available at ScienceDirect Fisheries Research journal homepage: www.elsevier.com/locate/fishres The fishing and illegal trade of the angelshark: DNA barcoding against T misleading identifications ⁎ Ingrid Vasconcellos Bunholia, Bruno Lopes da Silva Ferrettea,b, , Juliana Beltramin De Biasia,b, Carolina de Oliveira Magalhãesa,b, Matheus Marcos Rotundoc, Claudio Oliveirab, Fausto Forestib, Fernando Fernandes Mendonçaa a Laboratório de Genética Pesqueira e Conservação (GenPesC), Instituto do Mar (IMar), Universidade Federal de São Paulo (UNIFESP), Santos, SP, 11070-102, Brazil b Laboratório de Biologia e Genética de Peixes (LBGP), Instituto de Biociências de Botucatu (IBB), Universidade Estadual Paulista (UNESP), Botucatu, SP, 18618-689, Brazil c Acervo Zoológico da Universidade Santa Cecília (AZUSC), Universidade Santa Cecília (Unisanta), Santos, SP, 11045-907, Brazil ARTICLE INFO ABSTRACT Handled by J Viñas Morphological identification in the field can be extremely difficult considering fragmentation of species for trade Keywords: or high similarity between congeneric species. In this context, the shark group belonging to the genus Squatina is Conservation composed of three species distributed in the southern part of the western Atlantic. These three species are Endangered species classified in the IUCN Red List as endangered, and they are currently protected under Brazilian law, which Fishing monitoring prohibits fishing and trade. Molecular genetic tools are now used for practical taxonomic identification, parti- Forensic genetics cularly in cases where morphological observation is prevented, e.g., during fish processing. Consequently, DNA fi Mislabeling identi cation barcoding was used in the present study to track potential crimes against the landing and trade of endangered species along the São Paulo coastline, in particular Squatina guggenheim (n = 75) and S. -
(Gastropoda: Batillariidae) from Elkhorn Slough, California, USA
Mitochondrial DNA Part B Resources ISSN: (Print) 2380-2359 (Online) Journal homepage: https://www.tandfonline.com/loi/tmdn20 The complete mitogenome of the invasive Japanese mud snail Batillaria attramentaria (Gastropoda: Batillariidae) from Elkhorn Slough, California, USA Hartnell College Genomics Group, Paulina Andrade, Lisbeth Arreola, Melissa Belnas, Estefania Bland, Araceli Castillo, Omar Cisneros, Valentin Contreras, Celeste Diaz, Kevin T. Do, Carlos Donate, Estevan Espinoza, Nathan Frater, Garry G. Gabriel, Eric A. Gomez, Gino F. Gonzalez, Myrka Gonzalez, Paola Guido, Dylan Guidotti, Mishell Guzman Espinoza, Ivan Haro, Javier Hernandez Lopez, Caden E. Hernandez, Karina Hernandez, Jazmin A. Hernandez-Salazar, Jeffery R. Hughey, Héctor Jácome-Sáenz, Luis A. Jimenez, Eli R. Kallison, Mylisa S. King, Luis J. Lazaro, Feifei Zhai Lorenzo, Isaac Madrigal, Savannah Madruga, Adrian J. Maldonado, Alexander M. Medina, Marcela Mendez-Molina, Ali Mendez, David Murillo Martinez, David Orozco, Juan Orozco, Ulises Ortiz, Jennifer M. Pantoja, Alejandra N. Ponce, Angel R. Ramirez, Israel Rangel, Eliza Rojas, Adriana Roque, Beatriz Rosas, Colt Rubbo, Justin A. Saldana, Elian Sanchez, Alicia Steinhardt, Maria O. Taveras Dina, Judith Torres, Silvestre Valdez-Mata, Valeria Vargas, Paola Vazquez, Michelle M. Vazquez, Irene Vidales, Frances L. Wong, Christian S. Zagal, Santiago Zamora & Jesus Zepeda Amador To cite this article: Hartnell College Genomics Group, Paulina Andrade, Lisbeth Arreola, Melissa Belnas, Estefania Bland, Araceli Castillo, Omar Cisneros, Valentin Contreras, Celeste Diaz, Kevin T. Do, Carlos Donate, Estevan Espinoza, Nathan Frater, Garry G. Gabriel, Eric A. Gomez, Gino F. Gonzalez, Myrka Gonzalez, Paola Guido, Dylan Guidotti, Mishell Guzman Espinoza, Ivan Haro, Javier Hernandez Lopez, Caden E. Hernandez, Karina Hernandez, Jazmin A. -
California State University, Northridge Anthropogenic
CALIFORNIA STATE UNIVERSITY, NORTHRIDGE ANTHROPOGENIC STRESSORS AND THE IMPACTS ON SCLERACTINIAN AND NON-SCLERACTINIAN TAXA A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science in Biology By Ashley Elizabeth Potter December 2018 This thesis of Ashley E. Potter is approved by: Robert C. Carpenter, PhD. Date Hollie Putnam, PhD. Date Peter J. Edmunds, PhD., Chair Date California State University, Northridge ii ACKNOWLEDGEMENTS First and foremost, I would like to thank my super awesome advisor, Dr. Pete Edmunds who has always encouraged me to a better scientist and a better person, through his own actions. Pete’s mentorship has given me the tools I need to prepare for challenges and opportunities. He has also invested a tremendous amount of time and energy in order to allow me to have opportunities that further my career as a scientist. He is remarkably dedicated to all his students and their futures and even though he is a rock star, he always makes time for us. I feel very proud to have done a master’s with Pete and will use the skills I have learned for the rest of my life. Thank you so much Pete. I would like to thank my committee members, Dr. Robert Carpenter and Dr. Hollie Putnam putting up with me and providing me with their time and counsel. Their guidance was invaluable to my thesis work at CSUN and aided in making me a better scientist. Thank you to Hollie who helped support me as an undergraduate and really influenced my decision to join Pete’s lab. -
THE ENVIRONMENTAL LEGACY of the UC NATURAL RESERVE SYSTEM This Page Intentionally Left Blank the Environmental Legacy of the Uc Natural Reserve System
THE ENVIRONMENTAL LEGACY OF THE UC NATURAL RESERVE SYSTEM This page intentionally left blank the environmental legacy of the uc natural reserve system edited by peggy l. fiedler, susan gee rumsey, and kathleen m. wong university of california press Berkeley Los Angeles London The publisher gratefully acknowledges the generous contri- bution to this book provided by the University of California Natural Reserve System. University of California Press, one of the most distinguished university presses in the United States, enriches lives around the world by advancing scholarship in the humanities, social sciences, and natural sciences. Its activities are supported by the UC Press Foundation and by philanthropic contributions from individuals and institutions. For more information, visit www.ucpress.edu. University of California Press Berkeley and Los Angeles, California University of California Press, Ltd. London, England © 2013 by The Regents of the University of California Library of Congress Cataloging-in-Publication Data The environmental legacy of the UC natural reserve system / edited by Peggy L. Fiedler, Susan Gee Rumsey, and Kathleen M. Wong. p. cm. Includes bibliographical references and index. ISBN 978-0-520-27200-2 (cloth : alk. paper) 1. Natural areas—California. 2. University of California Natural Reserve System—History. 3. University of California (System)—Faculty. 4. Environmental protection—California. 5. Ecology—Study and teaching— California. 6. Natural history—Study and teaching—California. I. Fiedler, Peggy Lee. II. Rumsey, Susan Gee. III. Wong, Kathleen M. (Kathleen Michelle) QH76.5.C2E59 2013 333.73'1609794—dc23 2012014651 Manufactured in China 19 18 17 16 15 14 13 10 9 8 7 6 5 4 3 2 1 The paper used in this publication meets the minimum requirements of ANSI/NISO Z39.48-1992 (R 2002) (Permanence of Paper). -
CHECKLIST and BIOGEOGRAPHY of FISHES from GUADALUPE ISLAND, WESTERN MEXICO Héctor Reyes-Bonilla, Arturo Ayala-Bocos, Luis E
ReyeS-BONIllA eT Al: CheCklIST AND BIOgeOgRAphy Of fISheS fROm gUADAlUpe ISlAND CalCOfI Rep., Vol. 51, 2010 CHECKLIST AND BIOGEOGRAPHY OF FISHES FROM GUADALUPE ISLAND, WESTERN MEXICO Héctor REyES-BONILLA, Arturo AyALA-BOCOS, LUIS E. Calderon-AGUILERA SAúL GONzáLEz-Romero, ISRAEL SáNCHEz-ALCántara Centro de Investigación Científica y de Educación Superior de Ensenada AND MARIANA Walther MENDOzA Carretera Tijuana - Ensenada # 3918, zona Playitas, C.P. 22860 Universidad Autónoma de Baja California Sur Ensenada, B.C., México Departamento de Biología Marina Tel: +52 646 1750500, ext. 25257; Fax: +52 646 Apartado postal 19-B, CP 23080 [email protected] La Paz, B.C.S., México. Tel: (612) 123-8800, ext. 4160; Fax: (612) 123-8819 NADIA C. Olivares-BAñUELOS [email protected] Reserva de la Biosfera Isla Guadalupe Comisión Nacional de áreas Naturales Protegidas yULIANA R. BEDOLLA-GUzMáN AND Avenida del Puerto 375, local 30 Arturo RAMíREz-VALDEz Fraccionamiento Playas de Ensenada, C.P. 22880 Universidad Autónoma de Baja California Ensenada, B.C., México Facultad de Ciencias Marinas, Instituto de Investigaciones Oceanológicas Universidad Autónoma de Baja California, Carr. Tijuana-Ensenada km. 107, Apartado postal 453, C.P. 22890 Ensenada, B.C., México ABSTRACT recognized the biological and ecological significance of Guadalupe Island, off Baja California, México, is Guadalupe Island, and declared it a Biosphere Reserve an important fishing area which also harbors high (SEMARNAT 2005). marine biodiversity. Based on field data, literature Guadalupe Island is isolated, far away from the main- reviews, and scientific collection records, we pres- land and has limited logistic facilities to conduct scien- ent a comprehensive checklist of the local fish fauna, tific studies. -
Doggin' America's Beaches
Doggin’ America’s Beaches A Traveler’s Guide To Dog-Friendly Beaches - (and those that aren’t) Doug Gelbert illustrations by Andrew Chesworth Cruden Bay Books There is always something for an active dog to look forward to at the beach... DOGGIN’ AMERICA’S BEACHES Copyright 2007 by Cruden Bay Books All rights reserved. No part of this book may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopying, recording or by any information storage and retrieval system without permission in writing from the Publisher. Cruden Bay Books PO Box 467 Montchanin, DE 19710 www.hikewithyourdog.com International Standard Book Number 978-0-9797074-4-5 “Dogs are our link to paradise...to sit with a dog on a hillside on a glorious afternoon is to be back in Eden, where doing nothing was not boring - it was peace.” - Milan Kundera Ahead On The Trail Your Dog On The Atlantic Ocean Beaches 7 Your Dog On The Gulf Of Mexico Beaches 6 Your Dog On The Pacific Ocean Beaches 7 Your Dog On The Great Lakes Beaches 0 Also... Tips For Taking Your Dog To The Beach 6 Doggin’ The Chesapeake Bay 4 Introduction It is hard to imagine any place a dog is happier than at a beach. Whether running around on the sand, jumping in the water or just lying in the sun, every dog deserves a day at the beach. But all too often dog owners stopping at a sandy stretch of beach are met with signs designed to make hearts - human and canine alike - droop: NO DOGS ON BEACH. -
Bering Sea Marine Invasive Species Assessment Alaska Center for Conservation Science
Bering Sea Marine Invasive Species Assessment Alaska Center for Conservation Science Scientific Name: Batillaria attramentaria Phylum Mollusca Common Name Japanese false cerith Class Gastropoda Order Neotaenioglossa Family Batillariidae Z:\GAP\NPRB Marine Invasives\NPRB_DB\SppMaps\BATATT.png 153 Final Rank 46.00 Data Deficiency: 12.50 Category Scores and Data Deficiencies Total Data Deficient Category Score Possible Points Distribution and Habitat: 12.25 23 7.50 Anthropogenic Influence: 6 10 0 Biological Characteristics: 17 25 5.00 Impacts: 5 30 0 Figure 1. Occurrence records for non-native species, and their geographic proximity to the Bering Sea. Ecoregions are based on the classification system by Spalding et al. (2007). Totals: 40.25 87.50 12.50 Occurrence record data source(s): NEMESIS and NAS databases. General Biological Information Tolerances and Thresholds Minimum Temperature (°C) -2 Minimum Salinity (ppt) 7 Maximum Temperature (°C) 40 Maximum Salinity (ppt) 33 Minimum Reproductive Temperature (°C) Minimum Reproductive Salinity (ppt) Maximum Reproductive Temperature (°C) Maximum Reproductive Salinity (ppt) Additional Notes Size of adult shells ranges from 10 to 34 mm. The shell is usually gray-brown, often with a white band below the suture, but can range from light brown to dirty-black. Historically introduced with the Pacific oyster, Crassostrea gigas, but in recent years, it has been found in areas where oysters are not cultivated. Nevertheless, its spread has been attributed to anthropogenic vectors rather than natural dispersal. Report updated on Wednesday, December 06, 2017 Page 1 of 13 1. Distribution and Habitat 1.1 Survival requirements - Water temperature Choice: Considerable overlap – A large area (>75%) of the Bering Sea has temperatures suitable for year-round survival Score: A 3.75 of High uncertainty? 3.75 Ranking Rationale: Background Information: Temperatures required for year-round survival occur over a large Based on its geographic distribution, B. -
Hiller & Lessios 2017
www.nature.com/scientificreports OPEN Phylogeography of Petrolisthes armatus, an invasive species with low dispersal ability Received: 20 February 2017 Alexandra Hiller & Harilaos A. Lessios Accepted: 27 April 2017 Theoretically, species with high population structure are likely to expand their range, because marginal Published: xx xx xxxx populations are free to adapt to local conditions; however, meta-analyses have found a negative relation between structure and invasiveness. The crab Petrolisthes armatus has a wide native range, which has expanded in the last three decades. We sequenced 1718 bp of mitochondrial DNA from native and recently established populations to determine the population structure of the former and the origin of the latter. There was phylogenetic separation between Atlantic and eastern Pacific populations, and between east and west Atlantic ones. Haplotypes on the coast of Florida and newly established populations in Georgia and South Carolina belong to a different clade from those from Yucatán to Brazil, though a few haplotypes are shared. In the Pacific, populations from Colombia and Ecuador are highly divergent from those from Panamá and the Sea of Cortez. In general, populations were separated hundreds to million years ago with little subsequent gene flow. High genetic diversity in the newly established populations shows that they were founded by many individuals. Range expansion appears to have been limited by low dispersal rather than lack of ability of marginal populations to adapt to extreme conditions. The population-genetic constitution of marine invasive species in their native range is increasingly being stud- ied in efforts to determine the source of invasions into new areas (reviews in refs 1–5). -
Amphibious Fishes: Terrestrial Locomotion, Performance, Orientation, and Behaviors from an Applied Perspective by Noah R
AMPHIBIOUS FISHES: TERRESTRIAL LOCOMOTION, PERFORMANCE, ORIENTATION, AND BEHAVIORS FROM AN APPLIED PERSPECTIVE BY NOAH R. BRESSMAN A Dissertation Submitted to the Graduate Faculty of WAKE FOREST UNIVESITY GRADUATE SCHOOL OF ARTS AND SCIENCES in Partial Fulfillment of the Requirements for the Degree of DOCTOR OF PHILOSOPHY Biology May 2020 Winston-Salem, North Carolina Approved By: Miriam A. Ashley-Ross, Ph.D., Advisor Alice C. Gibb, Ph.D., Chair T. Michael Anderson, Ph.D. Bill Conner, Ph.D. Glen Mars, Ph.D. ACKNOWLEDGEMENTS I would like to thank my adviser Dr. Miriam Ashley-Ross for mentoring me and providing all of her support throughout my doctoral program. I would also like to thank the rest of my committee – Drs. T. Michael Anderson, Glen Marrs, Alice Gibb, and Bill Conner – for teaching me new skills and supporting me along the way. My dissertation research would not have been possible without the help of my collaborators, Drs. Jeff Hill, Joe Love, and Ben Perlman. Additionally, I am very appreciative of the many undergraduate and high school students who helped me collect and analyze data – Mark Simms, Tyler King, Caroline Horne, John Crumpler, John S. Gallen, Emily Lovern, Samir Lalani, Rob Sheppard, Cal Morrison, Imoh Udoh, Harrison McCamy, Laura Miron, and Amaya Pitts. I would like to thank my fellow graduate student labmates – Francesca Giammona, Dan O’Donnell, MC Regan, and Christine Vega – for their support and helping me flesh out ideas. I am appreciative of Dr. Ryan Earley, Dr. Bruce Turner, Allison Durland Donahou, Mary Groves, Tim Groves, Maryland Department of Natural Resources, UF Tropical Aquaculture Lab for providing fish, animal care, and lab space throughout my doctoral research. -
Body Size and Mobility Explain Species Centralities in the Gulf of California Food Web
COMMUNITY ECOLOGY 20(2): 149-160, 2019 1585-8553 © The Author(s). This article is published with Open Access at www.akademiai.com DOI: 10.1556/168.2019.20.2.5 Body size and mobility explain species centralities in the Gulf of California food web R. Olmo Gilabert1, A. F. Navia2, G. De La Cruz-Agüero1, J. C. Molinero3, U. Sommer3 and M. Scotti3,4 1CICIMAR Centro Interdisciplinario de Ciencias Marinas del Instituto Politécnico Nacional, Apartado Postal 592, CP 23094, La Paz, Baja California Sur, México 2Fundación colombiana para la investigación y conservación de tiburones y rayas, SQUALUS. Calle 10° # 72-35, Apto. 301E, Cali, Valle, Colombia 3GEOMAR Helmholtz Centre for Ocean Research Kiel, Düsternbrooker Weg 20, 24105 Kiel, Germany 4Corresponding author. Email: [email protected], phone: +49 (0) 431 600 4405 Keywords: Biodiversity; Centrality indices; Ecosystem functioning; Trait ecology. Abstract: Anthropic activities impact ecosystems worldwide thus contributing to the rapid erosion of biodiversity. The failure of traditional strategies targeting single species highlighted ecosystems as the most suitable scale to plan biodiversity management. Network analysis represents an ideal tool to model interactions in ecosystems and centrality indices have been extensively applied to quantify the structural and functional importance of species in food webs. However, many network studies fail in deciphering the ecological mechanisms that lead some species to occupy the most central positions in food webs. To address this question, we built a high-resolution food web of the Gulf of California and quantified species position using 15 centrality indices and the trophic level. We then modelled the values of each index as a function of traits and other attributes (e.g., habitat). -
Interspecific Differences in the Reaction to Atropine and in the Histology of the Esophagi of the Common California Sea Hares of the Genus Aplysia
Interspecific Differences in the Reaction to Atropine and in the Histology of the Esophagi of the Common California Sea Hares of the Genus Aplysia LINDSAY R. WINKLER and BERNARD E. TILTON! DURING A STUDY of the effects of certain cho through two 5 gal. carboys maintained in a re linergic agents on the tissues of Aplysia, it was frigerator. It was thus possible to keep the water noted that the esophagi of the two California clean and cooled to approximately the tempera species (A. califarnica and A. vaccaria) reacted ture of the intertidal environment of these ani divergently to atropine. This is of interest to mals. Parsley obtained in the local market was both the taxonomy and physiology of the genus eaten in quantity by A. califarnica but was re as well as potentially to a better understanding fused by A. vaccaria. Consequently all speci of the mode of action of atropine. Other drugs mens of the latter were used as soon as prac commonly known to show activity on muscle ticable. tissue were also tested on the two species to Animals were sacrificed by incising the entire determine if any other interspecifically diver length of the foot, turning the animal inside out gent reactions existed. These pharmacological and removing the esophagus after tying it at reactions will be reported later. both ends. The esophagi were suspended from Botazzi (1898) observed the periodic con a plastic holder in conventional baths using 30 tractions of the esophagus of the European ml. of sea water. The movable end of the esoph Aplysia and made a thorough study of its phys agus was ligated to a Grass force-displacement iology. -
Dean Oz/Μ: ;Z: Date
The evolutionary history of reproductive strategies in sculpins of the subfamily oligocottinae Item Type Thesis Authors Buser, Thaddaeus J. Download date 26/09/2021 18:39:58 Link to Item http://hdl.handle.net/11122/4549 THE EVOLUTIONARY HISTORY OF REPRODUCTIVE STRATEGIES IN SCULPINS OF THE SUBFAMILY OLIGOCOTTINAE By Thaddaeus J. Buser RECOMMENDED: Dr. Anne Beaudreau Dr. J. Andres Lopez Advisory Committee Chair Dr. Shannon Atkinson Fisheries Division Graduate Program Chair APPROVED: Dr. Michael Castellini ·. John Eichel erger Dean oZ/µ:_;z: Date THE EVOLUTIONARY HISTORY OF REPRODUCTIVE STRATEGIES IN SCULPINS OF THE SUBFAMILY OLIGOCOTTINAE A THESIS Presented to the Faculty of the University of Alaska Fairbanks in Partial Fulfillment of the Requirements for the Degree of Title Page MASTER OF SCIENCE By Thaddaeus J. Buser, B.Sc. Fairbanks, Alaska May 2014 v Abstract The sculpin subfamily Oligocottinae is a group of 17 nearshore species and is noteworthy for the fact that it contains both intertidal and subtidal species, copulating and non- copulating species, and many species with very broad geographic ranges. These factors, as well as the consistency with which the constituent genera have been grouped together historically, make the Oligocottinae an ideal group for the study of the evolution of a reproductive mode known as internal gamete association (IGA), which is unique to sculpins. I conducted a phylogenetic study of the oligocottine sculpins based on an extensive molecular dataset consisting of DNA sequences from eight genomic regions. From the variability present in those sequences, I inferred phylogenetic relationships using parsimony, maximum likelihood, and Bayesian inference. Results of these phylogenetic analyses show that some historical taxonomy and classifications require revision to align taxonomy with evolutionary relatedness.