Endocytosis: the Nanoparticle and Submicron Nanocompounds Gateway Into the Cell
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Glossary - Cellbiology
1 Glossary - Cellbiology Blotting: (Blot Analysis) Widely used biochemical technique for detecting the presence of specific macromolecules (proteins, mRNAs, or DNA sequences) in a mixture. A sample first is separated on an agarose or polyacrylamide gel usually under denaturing conditions; the separated components are transferred (blotting) to a nitrocellulose sheet, which is exposed to a radiolabeled molecule that specifically binds to the macromolecule of interest, and then subjected to autoradiography. Northern B.: mRNAs are detected with a complementary DNA; Southern B.: DNA restriction fragments are detected with complementary nucleotide sequences; Western B.: Proteins are detected by specific antibodies. Cell: The fundamental unit of living organisms. Cells are bounded by a lipid-containing plasma membrane, containing the central nucleus, and the cytoplasm. Cells are generally capable of independent reproduction. More complex cells like Eukaryotes have various compartments (organelles) where special tasks essential for the survival of the cell take place. Cytoplasm: Viscous contents of a cell that are contained within the plasma membrane but, in eukaryotic cells, outside the nucleus. The part of the cytoplasm not contained in any organelle is called the Cytosol. Cytoskeleton: (Gk. ) Three dimensional network of fibrous elements, allowing precisely regulated movements of cell parts, transport organelles, and help to maintain a cell’s shape. • Actin filament: (Microfilaments) Ubiquitous eukaryotic cytoskeletal proteins (one end is attached to the cell-cortex) of two “twisted“ actin monomers; are important in the structural support and movement of cells. Each actin filament (F-actin) consists of two strands of globular subunits (G-Actin) wrapped around each other to form a polarized unit (high ionic cytoplasm lead to the formation of AF, whereas low ion-concentration disassembles AF). -
Exogenous Antigens Gain Access to the Major Histocompatibility Complex Class I Processing Pathway in B Cells by Receptor-Mediated Uptake Byyong Ke and Judith A
Brief Definitive Report Exogenous Antigens Gain Access to the Major Histocompatibility Complex Class I Processing Pathway in B Cells by Receptor-mediated Uptake ByYong Ke and Judith A. Kapp From the Department of Pathology and Winship Cancer Center, Emory University School of Medicine, Atlanta, Georgia 30322 Summary Professional antigen-presenting cells, such as macrophages, dendritic cells, or B cells, take up soluble, exogenous antigens (Ags) and process them through the class II pathway, Several re- ports have shown that phagocytic macrophages also process particulate or soluble forms of ex- ogenous Ag via the class I pathway. By contrast, B cells normally do not process soluble, exog- enous Ag by way of the class I pathway unless Ags are directly introduced into the cytoplasm. Here we report that B cells present exogenous Ag via the class I pathway when Ags are taken up by receptor-mediated endocytosis. Thus, specialized methods of Ag uptake such as phago- cytosis or receptor-mediated endocytosis deliver exogenous Ag into the class I pathway of Ag processing and presentation. xogenous Ags are taken up nonspecifically by fluid- Materials and Methods phase pinocytosis or endocytosis, processed, and pre- E Antigens and Reagents. Chicken egg OVA, TNP, chloroquine, sented via class II pathway by professional APCs, such as brefeldin A, and phenazine methosulfate (PMS) were purchased macrophages, dendritic cells, or B cells. Exogenous Ags do from Sigma Chemical Co. (St. Louis, MO). Crystallized beef in- not enter the class I pathway of most cells (1-3). However, sulin was purchased from Lilly Research Labs (Indianapolis, IN). a small population of phagocytic macrophages can process TNP was conjugated to OVA or insulin as described (13). -
Clathrin-Independent Pathways of Endocytosis
Downloaded from http://cshperspectives.cshlp.org/ on October 3, 2021 - Published by Cold Spring Harbor Laboratory Press Clathrin-Independent Pathways of Endocytosis Satyajit Mayor1, Robert G. Parton2, and Julie G. Donaldson3 1National Centre for Biological Sciences, Tata Institute of Fundamental Research, and Institute for Stem Cell Biology and Regenerative Medicine, Bangalore 560065, India 2The University of Queensland, Institute for Molecular Bioscience and Centre for Microscopy and Microanalysis, Queensland 4072, Brisbane, Australia 3Cell Biology and Physiology Center, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, Maryland 20892 Correspondence: [email protected] There are many pathways of endocytosis at the cell surface that apparently operate at the same time. With the advent of new molecular genetic and imaging tools, an understanding of the different ways by which a cell may endocytose cargo is increasing by leaps and bounds. In this review we explore pathways of endocytosis that occur in the absence of clathrin. These are referred to as clathrin-independent endocytosis (CIE). Here we primarily focus on those pathways that function at the small scale in which some have distinct coats (caveolae) and others function in the absence of specific coated intermediates. We follow the trafficking itineraries of the material endocytosed by these pathways and finally discuss the functional roles that these pathways play in cell and tissue physiology. It is likely that these pathways will play key roles in the regulation of plasma membrane area and tension and also control the availability of membrane during cell migration. he identification of many of the components Consequently, CME has remained a pre- Tinvolved in clathrin-mediated endocytosis dominant paradigm for following the uptake (CME) and their subsequent characterization of material into the cell. -
Membrane Transport, Absorption and Distribution of Drugs
Chapter 2 1 Pharmacokinetics: Membrane Transport, Absorption and Distribution of Drugs Pharmacokinetics is the quantitative study of drug movement in, through and out of the body. The overall scheme of pharmacokinetic processes is depicted in Fig. 2.1. The intensity of response is related to concentration of the drug at the site of action, which in turn is dependent on its pharmacokinetic properties. Pharmacokinetic considerations, therefore, determine the route(s) of administration, dose, and latency of onset, time of peak action, duration of action and frequency of administration of a drug. Fig. 2.1: Schematic depiction of pharmacokinetic processes All pharmacokinetic processes involve transport of the drug across biological membranes. Biological membrane This is a bilayer (about 100 Å thick) of phospholipid and cholesterol molecules, the polar groups (glyceryl phosphate attached to ethanolamine/choline or hydroxyl group of cholesterol) of these are oriented at the two surfaces and the nonpolar hydrocarbon chains are embedded in the matrix to form a continuous sheet. This imparts high electrical resistance and relative impermeability to the membrane. Extrinsic and intrinsic protein molecules are adsorbed on the lipid bilayer (Fig. 2.2). Glyco- proteins or glycolipids are formed on the surface by attachment to polymeric sugars, 2 aminosugars or sialic acids. The specific lipid and protein composition of different membranes differs according to the cell or the organelle type. The proteins are able to freely float through the membrane: associate and organize or vice versa. Some of the intrinsic ones, which extend through the full thickness of the membrane, surround fine aqueous pores. CHAPTER2 Fig. -
An Introduction to the Viruses
Chapter 1 An introduction to the viruses Viruses are obligate intracellular parasites of man, other animals, plants and bacteria. They can only multiply within cells, and thus differ from bacteria, which can multiply in tissues in an extracellular position, and also in artificial culture media in the laboratory. It has always been recognized that viruses are distinct from the bacteria, but originally other groups of infective agents were included among the viruses which are now known to be organisms of a different and more complex nature. These included the Chlamydiae, organisms causing diseases such as lymphogranuloma venereum and trachoma, and the Rickettsiae, the causative agents of typhus and related infections. The specific treatment of infections caused by these two groups of agents will not be considered in this work, which is restricted to the chemotherapy of infections caused by the true viruses. The Chlamydiae and Rickettsiae are complete organisms, with cell walls, which possess both types of nucleic acid, enzyme systems which function within their cytoplasm, and a number of cell organelles. The viruses, on the other hand, possess either DNA or RNA as their genetic material, but not both. In some cases they contain enzymes, but these exert their functions within the host cell after the virus particle has under gone a process of dissolution during the early stage of infection. Except in the case of the arenaviruses, a group which contains the virus of Lassa fever, the virus particles do not contain organelles. A virus is thus much more rudimentary in structure, and relies upon the host cell to provide the systems for synthesizing its components which it does not possess itself. -
An Arf1 Synthetic Lethal Screen Identifies a New Clathrin Heavy
Copyright 1998 by the Genetics Society of America An arf1D Synthetic Lethal Screen Identi®es a New Clathrin Heavy Chain Conditional Allele That Perturbs Vacuolar Protein Transport in Saccharomyces cerevisiae Chih-Ying Chen and Todd R. Graham Department of Molecular Biology, Vanderbilt University, Nashville, Tennessee 37235 Manuscript received March 5, 1998 Accepted for publication June 16, 1998 ABSTRACT ADP-ribosylation factor (ARF) is a small GTP-binding protein that is thought to regulate the assembly of coat proteins on transport vesicles. To identify factors that functionally interact with ARF, we have performed a genetic screen in Saccharomyces cerevisiae for mutations that exhibit synthetic lethality with an arf1D allele and de®ned seven genes by complementation tests (SWA1-7 for synthetically lethal with arf1D). Most of the swa mutants exhibit phenotypes comparable to arf1D mutants such as temperature-conditional growth, hypersensitivity to ¯uoride ions, and partial protein transport and glycosylation defects. Here, we report that swa5-1 is a new temperature-sensitive allele of the clathrin heavy chain gene (chc1-5), which carries a frameshift mutation near the 39 end of the CHC1 open reading frame. This genetic interaction between arf1 and chc1 provides in vivo evidence for a role for ARF in clathrin coat assembly. Surprisingly, strains harboring chc1-5 exhibited a signi®cant defect in transport of carboxypeptidase Y or carboxypepti- dase S to the vacuole that was not observed in other chc1 ts mutants. The kinetics of invertase secretion or transport of alkaline phosphatase to the vacuole were not signi®cantly affected in the chc1-5 mutant, further implicating clathrin speci®cally in the Golgi to vacuole transport pathway for carboxypeptidase Y. -
Elucidating the Signalling Pathway of Mer Tyrosine Kinase Receptor in Efferocytosis
Western University Scholarship@Western Electronic Thesis and Dissertation Repository 8-19-2014 12:00 AM Elucidating the Signalling Pathway of Mer Tyrosine Kinase Receptor in Efferocytosis Ekenedelichukwu Azu The University of Western Ontario Supervisor Dr. Bryan Heit The University of Western Ontario Graduate Program in Microbiology and Immunology A thesis submitted in partial fulfillment of the equirr ements for the degree in Master of Science © Ekenedelichukwu Azu 2014 Follow this and additional works at: https://ir.lib.uwo.ca/etd Part of the Cell Biology Commons, Immunity Commons, Molecular Biology Commons, and the Other Immunology and Infectious Disease Commons Recommended Citation Azu, Ekenedelichukwu, "Elucidating the Signalling Pathway of Mer Tyrosine Kinase Receptor in Efferocytosis" (2014). Electronic Thesis and Dissertation Repository. 2260. https://ir.lib.uwo.ca/etd/2260 This Dissertation/Thesis is brought to you for free and open access by Scholarship@Western. It has been accepted for inclusion in Electronic Thesis and Dissertation Repository by an authorized administrator of Scholarship@Western. For more information, please contact [email protected]. ELUCIDATING THE SIGNALLING PATHWAY OF MER TYROSINE KINASE RECEPTOR IN EFFEROCYTOSIS Thesis format: Monograph by Ekenedelichukwu Azu Graduate Program in Microbiology and Immunology A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science The School of Graduate and Postdoctoral Studies The University of Western Ontario London, Ontario, Canada © Ekenedelichukwu Azu 2014 Abstract Efferocytosis is the clearance of apoptotic cells and is necessary for homeostasis. Mer Tyrosine Kinase (MerTK) is a crucial efferocytic receptor whose loss is associated with chronic inflammatory diseases and autoimmunity. While previous studies have shown that MerTK mediates efferocytosis through a unique mechanism that requires integrins, MerTK signalling pathway remains unknown. -
ADP-Ribosylation Factor, a Small GTP-Binding Protein, Is Required for Binding of the Coatomer Protein Fl-COP to Golgi Membranes JULIE G
Proc. Natl. Acad. Sci. USA Vol. 89, pp. 6408-6412, July 1992 Biochemistry ADP-ribosylation factor, a small GTP-binding protein, is required for binding of the coatomer protein fl-COP to Golgi membranes JULIE G. DONALDSON*, DAN CASSEL*t, RICHARD A. KAHN*, AND RICHARD D. KLAUSNER* *Cell Biology and Metabolism Branch, National Institute of Child Health and Human Development, and tLaboratory of Biological Chemistry, Division of Cancer Treatment, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892 Communicated by Marc Kirschner, April 20, 1992 (receivedfor review February 11, 1992) ABSTRACT The coatomer is a cytosolic protein complex localized to the Golgi complex, although their functions have that reversibly associates with Golgi membranes and is Impli- not been defined. Distinct among these proteins is the ADP- cated in modulating Golgi membrane transport. The associa- ribosylation factor (ARF), originally identified as a cofactor tion of 13-COP, a component of coatomer, with Golgi mem- required for in vitro cholera toxin-catalyzed ADP- branes is enhanced by guanosine 5'-[v-thioltriphosphate ribosylation of the a subunit of the trimeric GTP-binding (GTP[yS]), a nonhydrolyzable analogue of GTP, and by a protein G, (G,.) (19). ARF is an abundant cytosolic protein mixture of aluminum and fluoride ions (Al/F). Here we show that reversibly associates with Golgi membranes (20, 21). that the ADP-ribosylation factor (ARF) is required for the ARF has been shown to be present on Golgi coated vesicles binding of (-COP. Thus, 13-COP contained in a coatomer generated in the presence of GTP[yS], but it is not a com- fraction that has been resolved from ARF does not bind to Golgi ponent of the cytosolic coatomer (22). -
Phagocytosis References
9025 Technology Dr. Fishers, IN 46038 • www.bangslabs.com • [email protected] • 800.387.0672 PHAGOCYTOSIS REFERENCES GENERAL BEAD SELECTION & PHAGOCYTOSIS RATES Thiele L, Diederichs JE, Reszka R, Merkle HP, Walter E. (2003) Competitive adsorption of serum proteins at microparticles affects phagocytosis by dendritic cells. Biomaterials; 24(8):1409-18. (1µm Polybead® and Fluoresbrite® Carboxylate microspheres) Ahsan F, Rivas IP, Khan MA, Torres Suarez AI. (2002) Targeting to macrophages: role of physicochemical properties of particulate carriers-- liposomes and microspheres--on the phagocytosis by macrophages. J Controlled Release; 79:29-40. Thiele L, Rothen-Rutishauser B, Jilek S, Wunderli-Allenspach H, Merkle HP, Walter E. (2001) Evaluation of particle uptake in human blood monocyte-derived cells in vitro. Does phagocytosis activity of dendritic cells measure up with macrophages? J Controlled Release; 76:59-71. Koval M, Preiter K, Adles C, Stahl PD, Steinberg TH. (1998) Size of IgG-opsonized particles determines macrophage response during internalization. Exp Cell Res; 242(1):265-73. (0.2-0.3µm Polybead® microspheres; trypan blue quenching) Tabata Y, Ikada Y. (1988) Effect of the size and surface charge of polymer microspheres on their phagocytosis by macrophage. Biomaterials; 9(4):356-62. MONOCYTES Gu BJ, Duce JA, Valova VA, Wong B, Bush AI, Petrou S, Wiley JS. (2012) P2X7 receptor-mediated scavenger activity of mononuclear phagocytes toward non-opsonized particles and apoptotic cells is inhibited by serum glycoproteins but remains active in cerebrospinal fluid.Journal of Biological Chemistry. May 18;287:17318-30. (1µm Fluoresbrite® YG microspheres) Dumrese C, Slomianka L, Ziegler U, Choi SS, Kalia A, Fulurija A, Lu W, Berg DE, Benghezal M, Marshall B, Mittl PR. -
Palmitoylation: Implications for Nitric Oxide Signaling
Proc. Natl. Acad. Sci. USA Vol. 93, pp. 6448-6453, June 1996 Cell Biology Targeting of nitric oxide synthase to endothelial cell caveolae via palmitoylation: Implications for nitric oxide signaling (endothelial nitric oxide synthase/signal transduction/vascular biology/N-myristoylation) GUILLERMO GARC1A-CARDENA*, PHIL OHt, JIANwEI LIu*, JAN E. SCHNITZERt, AND WILLIAM C. SESSA*t *Molecular Cardiobiology Program and Department of Pharmacology, Yale University School of Medicine, 295 Congress Avenue, New Haven, CT 06536; and tDepartment of Pathology, Harvard Medical School, Beth Israel Hospital, 330 Brookline Avenue, Boston, MA 02215 Communicated by Vincent T. Marchesi, Yale Univeristy, New Haven, CT, March 13, 1996 (received for review February 5, 1996) ABSTRACT The membrane association of endothelial insoluble membranes (TIM), suggesting that caveolae are nitric oxide synthase (eNOS) plays an important role in the signal processing centers (2-11). Additionally, caveolae have biosynthesis of nitric oxide (NO) in vascular endothelium. been implicated in other important cellular functions, includ- Previously, we have shown that in cultured endothelial cells ing endocytosis, potocytosis, and transcytosis (12, 13). and in intact blood vessels, eNOS is found primarily in the Endothelial nitric oxide synthase (eNOS) is a peripheral perinuclear region of the cells and in discrete regions of the membrane protein that metabolizes L-arginine to nitric oxide plasma membrane, suggesting trafficking of the protein from (NO). NO is a short-lived free radical gas involved in diverse the Golgi to specialized plasma membrane structures. Here, physiological and pathological processes. Endothelial-derived we show that eNOS is found in Triton X-100-insoluble mem- NO is an important paracrine mediator of vascular smooth branes prepared from cultured bovine aortic endothelial cells muscle tone and is an inhibitor of leukocyte adhesion and and colocalizes with caveolin, a coat protein of caveolae, in platelet aggregation (14, 15). -
Palmitoylation of Caveolin-1 and Its Importance for Structural and Functional Plasticity
Palmitoylation of Caveolin-1 and its importance for structural and functional plasticity A DISSERTATION SUBMITTED TO THE FACULTY OF UNIVERSITY OF MINNESOTA BY Katherine R. Tonn IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY Paul G. Mermelstein November 2018 © Katherine R. Tonn Eisinger 2018 Acknowledgments I would like to thank my adviser, Dr. Paul Mermelstein, for his mentorship, training, support, and scientific flexibility. Infinite thanks to past and present members of the Mermelstein and Meisel Labs, especially Dr. Brittni Peterson, Dr. Kelsey Moore, Dr. Laura Been, Dr. Luis Martinez, Dr. Valerie Hedges, and Dr. John Meitzen, for being a source of scientific inspiration and friendship. I could not have asked for a better friend and lab colleague than Dr. Kellie Gross, whose input has kept me sane and made me a better scientist. Thanks also to stellar undergrads Kerry Trotter, Julia Dworsky, and Sam Swanson for their help and energy. Thanks to the many people who collaborated or helped in some way on the experiments presented in this thesis, including Dr. Mark Thomas, Dr. Lorene Lanier, Dr. Mark Dell’Acqua, Dr. Kevin Woolfrey, Dr. Brian Head, Dr. Jing Tong, and Dr. John Meitzen. In particular, I am extremely grateful for the collaboration of Dr. Lorene Lanier, whose enthusiasm helped reinvigorate me and this project. Finally, thanks to the members of my thesis committee, Drs. Harry Orr, Timothy Ebner, Anna Lee, and Robert Meisel, for their encouragement and guidance. i Dedication For Mom, my first and most important example of what it is to be smart, versatile, and kind. -
Endothelial Plasmalemma Vesicle–Associated Protein Regulates the Homeostasis of Splenic Immature B Cells and B-1 B Cells
Endothelial Plasmalemma Vesicle−Associated Protein Regulates the Homeostasis of Splenic Immature B Cells and B-1 B Cells This information is current as Raul Elgueta, Dan Tse, Sophie J. Deharvengt, Marcus R. of September 26, 2021. Luciano, Catherine Carriere, Randolph J. Noelle and Radu V. Stan J Immunol 2016; 197:3970-3981; Prepublished online 14 October 2016; doi: 10.4049/jimmunol.1501859 Downloaded from http://www.jimmunol.org/content/197/10/3970 Supplementary http://www.jimmunol.org/content/suppl/2016/10/13/jimmunol.150185 Material 9.DCSupplemental http://www.jimmunol.org/ References This article cites 64 articles, 25 of which you can access for free at: http://www.jimmunol.org/content/197/10/3970.full#ref-list-1 Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision by guest on September 26, 2021 • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2016 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology Endothelial Plasmalemma Vesicle–Associated Protein Regulates the Homeostasis of Splenic Immature B Cells and B-1 B Cells Raul Elgueta,*,† Dan Tse,‡,1 Sophie J.