Evolutionary Trends of the Pharyngeal Dentition in Cypriniformes (Actinopterygii: Ostariophysi)
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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
Phylogeny Classification Additional Readings Clupeomorpha and Ostariophysi
Teleostei - AccessScience from McGraw-Hill Education http://www.accessscience.com/content/teleostei/680400 (http://www.accessscience.com/) Article by: Boschung, Herbert Department of Biological Sciences, University of Alabama, Tuscaloosa, Alabama. Gardiner, Brian Linnean Society of London, Burlington House, Piccadilly, London, United Kingdom. Publication year: 2014 DOI: http://dx.doi.org/10.1036/1097-8542.680400 (http://dx.doi.org/10.1036/1097-8542.680400) Content Morphology Euteleostei Bibliography Phylogeny Classification Additional Readings Clupeomorpha and Ostariophysi The most recent group of actinopterygians (rayfin fishes), first appearing in the Upper Triassic (Fig. 1). About 26,840 species are contained within the Teleostei, accounting for more than half of all living vertebrates and over 96% of all living fishes. Teleosts comprise 517 families, of which 69 are extinct, leaving 448 extant families; of these, about 43% have no fossil record. See also: Actinopterygii (/content/actinopterygii/009100); Osteichthyes (/content/osteichthyes/478500) Fig. 1 Cladogram showing the relationships of the extant teleosts with the other extant actinopterygians. (J. S. Nelson, Fishes of the World, 4th ed., Wiley, New York, 2006) 1 of 9 10/7/2015 1:07 PM Teleostei - AccessScience from McGraw-Hill Education http://www.accessscience.com/content/teleostei/680400 Morphology Much of the evidence for teleost monophyly (evolving from a common ancestral form) and relationships comes from the caudal skeleton and concomitant acquisition of a homocercal tail (upper and lower lobes of the caudal fin are symmetrical). This type of tail primitively results from an ontogenetic fusion of centra (bodies of vertebrae) and the possession of paired bracing bones located bilaterally along the dorsal region of the caudal skeleton, derived ontogenetically from the neural arches (uroneurals) of the ural (tail) centra. -
The Evolution of the Placenta Drives a Shift in Sexual Selection in Livebearing Fish
LETTER doi:10.1038/nature13451 The evolution of the placenta drives a shift in sexual selection in livebearing fish B. J. A. Pollux1,2, R. W. Meredith1,3, M. S. Springer1, T. Garland1 & D. N. Reznick1 The evolution of the placenta from a non-placental ancestor causes a species produce large, ‘costly’ (that is, fully provisioned) eggs5,6, gaining shift of maternal investment from pre- to post-fertilization, creating most reproductive benefits by carefully selecting suitable mates based a venue for parent–offspring conflicts during pregnancy1–4. Theory on phenotype or behaviour2. These females, however, run the risk of mat- predicts that the rise of these conflicts should drive a shift from a ing with genetically inferior (for example, closely related or dishonestly reliance on pre-copulatory female mate choice to polyandry in conjunc- signalling) males, because genetically incompatible males are generally tion with post-zygotic mechanisms of sexual selection2. This hypoth- not discernable at the phenotypic level10. Placental females may reduce esis has not yet been empirically tested. Here we apply comparative these risks by producing tiny, inexpensive eggs and creating large mixed- methods to test a key prediction of this hypothesis, which is that the paternity litters by mating with multiple males. They may then rely on evolution of placentation is associated with reduced pre-copulatory the expression of the paternal genomes to induce differential patterns of female mate choice. We exploit a unique quality of the livebearing fish post-zygotic maternal investment among the embryos and, in extreme family Poeciliidae: placentas have repeatedly evolved or been lost, cases, divert resources from genetically defective (incompatible) to viable creating diversity among closely related lineages in the presence or embryos1–4,6,11. -
Diploid Hybrid Fish Derived from the Cross Between Female Bleeker's
Li et al. BMC Genetics (2019) 20:80 https://doi.org/10.1186/s12863-019-0781-5 RESEARCH ARTICLE Open Access Diploid hybrid fish derived from the cross between female Bleeker’s yellow tail and male topmouth culter, two cyprinid fishes belonging to different subfamilies Shengnan Li1,2†, Lihua Xie1,2†, Jun Xiao1,2, Liujiao Yuan1,2, Tian Zhou1,2, Kaikun Luo1,2, Chun Zhang1,2, Rurong Zhao1,2, Min Tao1,2* and Shaojun Liu1,2* Abstract Background: Bleeker’s yellow tail (Xenocypris davidi Bleeker, YT) and topmouth culter (Culter alburnus Basilewsky, TC) are both famous and important economic freshwater fish in China. YT, a kind of omnivorous fish, has strong resistance. TC, a kind of carnivorous fish, has high-quality meat but poor resistance. Distant hybridization can integrate the advantages of both parents. There has been no previous report regarding hybrid fish derived from female YT × male TC. It is expected that hybridization of these two kinds of fish will result in F1 hybrids with improved characteristics, such as faster growth rate, stronger resistance, and high-quality meat, which are of great significance in fish genetic breeding. Results: In this study, we investigated the main biological characteristics of diploid hybrid fish derived from female YT × male TC. The hybrids had an intermediate number of upper lateral line scales between those for YT and TC. The hybrids were diploids with 48 chromosomes and had the same karyotype formula as their parents. The hybrids generated variations in 5S rDNA (designated class IV: 212 bp) and lost specific 5S rDNA derived from the maternal parent (designated class II: 221 bp), which might be related to hybridization. -
Chanodichthys Recurviceps (A Fish, No Common Name) Ecological Risk Screening Summary
Chanodichthys recurviceps (a fish, no common name) Ecological Risk Screening Summary U.S. Fish and Wildlife Service, June 2012 Revised, November 2016 Web Version, 6/18/2018 Photo: H. T. Cheng. Licensed under CC BY-NC. Available: http://naturewatch.org.nz/taxa/187285-Culter-recurviceps. (November 2016). 1 Native Range and Status in the United States Native Range From Zhao and Cui (2011): “Known from Zhu Jiang River (Pearl River) in Guangdong and Guanxi Provinces, and Hainan Province in China.” Status in the United States This species has not been reported in the United States. 1 Means of Introductions in the United States This species has not been reported in the United States. 2 Biology and Ecology Taxonomic Hierarchy and Taxonomic Standing From ITIS (2016): “Kingdom Animalia Subkingdom Bilateria Infrakingdom Deuterostomia Phylum Chordata Subphylum Vertebrata Infraphylum Gnathostomata Superclass Osteichthyes Class Actinopterygii Subclass Neopterygii Infraclass Teleostei Superorder Ostariophysi Order Cypriniformes Superfamily Cyprinoidea Family Cyprinidae Genus Culter Basilewsky, 1855 Species Culter recurviceps (Richardson, 1846)” From Eschmeyer et al. (2016): “recurviceps, Leuciscus Richardson [J.] 1846:295 [Report of the British Association for the Advancement of Science 15th meeting [1845] […]] Canton, China. No types known. Based solely on an illustration by Reeves (see Whitehead 1970:210, Pl. 17a […]). •Valid as Erythroculter recurviceps (Richardson 1846) -- (Lu in Pan et al. 1991:93 […]). •Questionably the same as Culter alburnus Basilewsky 1855 -- (Bogutskaya & Naseka 1996:24 […], Naseka 1998:75 […]). •Valid as Culter recurviceps (Richardson 1846) -- (Luo & Chen in Chen et al. 1998:188 […], Zhang et al. 2016:59 […]). •Valid as Chanodichthys recurviceps (Richardson 1846) -- (Kottelat 2013:87 […]). -
A Manual for Commercial Production of the Tiger Barb, ~C~T Etnlnmmi
saeAU-8-97-002 C3 A Manual for Commercial Production of the Tiger Barb, ~c~t etnlnmmI. A T p y P i d T k Sp By: Clyde S. Tamaru, Ph.D. Brian Cole, M.S. Richard Bailey, B.A. Christopher Brown, Ph.o. Center for Tropical and Subtropical Aquaculture Publication Number 129 Commercial Production of Tiger 8arbs ACKNOWLEDGEMENTS This manual is a combined effort of three institutions, United States Department of Agriculture Center for Tropical and Subtropical Aquaculture CTSA!, and University of Hawaii Sea Grant Extension Service SGES! and Aquaculture Development Program ADP!, Department of Land and Natural Resources, State of Hawaii. Financial support for this project was provided by the Center for Tropical and Subtropical Aquaculture through grants from the US Department of Agriculture USDA grant numbers 93-38500-8583 and 94-38500-0065!. Production of the manual is also funded in part by a grant from the National Oceanic and Atmospheric Administration, project kA/AS-1 which is sponsored by the University of Hawaii Sea Grant College Program, School of Ocean Earth Science and Technology SOEST!, under institutional Grant No. NA36RG0507 from NOAA Office of Sea Grant, Department of Commerce, UNIHI-SEAGRANT-TR-96-01. Support for the production of the manual was also provided by the Aquaculture Development Program, Department of Land and Natural Resources, State of Hawaii, as part of their Aquaculture Extension Project with University of Hawaii Sea Grant Extension, Service Contract Nos. 9325 and 9638. The views expressed herein are those of the authors and do not necessarily reflect the views of USDA or any of its sub-agencies. -
A Functional-Morphological Study on the Attachment, Respiration and Feeding Mechanisms in Balitorinae (Balitoridae, Teleostei)
Faculty of Sciences Department of Biology Research group: Evolutionary Morphology of Vertebrates Academic year 2012-2013 A functional-morphological study on the attachment, respiration and feeding mechanisms in Balitorinae (Balitoridae, Teleostei) De Meyer Jens Supervisor: Dr. Tom Geerinckx Thesis submitted to obtain the degree of Tutor: Dr. Tom Geerinckx Master in Biology II © Faculty of Sciences – Evolutionary Morphology of Vertebrates Deze masterproef bevat vertrouwelijk informatie en vertrouwelijke onderzoeksresultaten die toebehoren aan de UGent. De inhoud van de masterproef mag onder geen enkele manier publiek gemaakt worden, noch geheel noch gedeeltelijk zonder de uitdrukkelijke schriftelijke voorafgaandelijke toestemming van de UGent vertegenwoordiger, in casu de promotor. Zo is het nemen van kopieën of het op eender welke wijze dupliceren van het eindwerk verboden, tenzij met schriftelijke toestemming. Het niet respecteren van de confidentiële aard van het eindwerk veroorzaakt onherstelbare schade aan de UGent. Ingeval een geschil zou ontstaan in het kader van deze verklaring, zijn de rechtbanken van het arrondissement Gent uitsluitend bevoegd daarvan kennis te nemen. All rights reserved. This thesis contains confidential information and confidential research results that are property to the UGent. The contents of this master thesis may under no circumstances be made public, nor complete or partial, without the explicit and preceding permission of the UGent representative, i.e. the supervisor. The thesis may under no circumstances be copied or duplicated in any form, unless permission granted in written form. Any violation of the confidential nature of this thesis may impose irreparable damage to the UGent. In case of a dispute that may arise within the context of this declaration, the Judicial Court of© All rights reserved. -
ML-DSP: Machine Learning with Digital Signal Processing for Ultrafast, Accurate, and Scalable Genome Classification at All Taxonomic Levels Gurjit S
Randhawa et al. BMC Genomics (2019) 20:267 https://doi.org/10.1186/s12864-019-5571-y SOFTWARE ARTICLE Open Access ML-DSP: Machine Learning with Digital Signal Processing for ultrafast, accurate, and scalable genome classification at all taxonomic levels Gurjit S. Randhawa1* , Kathleen A. Hill2 and Lila Kari3 Abstract Background: Although software tools abound for the comparison, analysis, identification, and classification of genomic sequences, taxonomic classification remains challenging due to the magnitude of the datasets and the intrinsic problems associated with classification. The need exists for an approach and software tool that addresses the limitations of existing alignment-based methods, as well as the challenges of recently proposed alignment-free methods. Results: We propose a novel combination of supervised Machine Learning with Digital Signal Processing, resulting in ML-DSP: an alignment-free software tool for ultrafast, accurate, and scalable genome classification at all taxonomic levels. We test ML-DSP by classifying 7396 full mitochondrial genomes at various taxonomic levels, from kingdom to genus, with an average classification accuracy of > 97%. A quantitative comparison with state-of-the-art classification software tools is performed, on two small benchmark datasets and one large 4322 vertebrate mtDNA genomes dataset. Our results show that ML-DSP overwhelmingly outperforms the alignment-based software MEGA7 (alignment with MUSCLE or CLUSTALW) in terms of processing time, while having comparable classification accuracies for small datasets and superior accuracies for the large dataset. Compared with the alignment-free software FFP (Feature Frequency Profile), ML-DSP has significantly better classification accuracy, and is overall faster. We also provide preliminary experiments indicating the potential of ML-DSP to be used for other datasets, by classifying 4271 complete dengue virus genomes into subtypes with 100% accuracy, and 4,710 bacterial genomes into phyla with 95.5% accuracy. -
Occasional Papers of the Museum of Zoology University of Michigan Ann Arbor.Michigan
OCCASIONAL PAPERS OF THE MUSEUM OF ZOOLOGY UNIVERSITY OF MICHIGAN ANN ARBOR.MICHIGAN THE CYPRINID DERMOSPHENOTIC AND THE SUBFAMILY RASBORINAE The Cyprinidac, the largest family of fishes, do not lend themselves readily to subfamily classification (Sagemehl, 1891; Regan, 1911 ; Ramaswami, 195513). Nevertheless, it is desirable to divide the family in some way, if only to facilitate investiga- tion. Since Gunther's (1868) basic review of the cyprinids the emphasis in classification has shifted from divisions that are rcadily differentiable to groupings intended to be more nearly phylogenetic. In the course of this change a subfamily classifica- tion has gradually been evolved. Among the most notable contributions to the development of present subfamily concepts are those of Berg (1912), Nikolsky (1954), and Banarescu (e-g. 1968a). The present paper is an attempt to clarify the nature and relationships of one cyprinid subfamily-the Rasborinae. (The group was termed Danioinae by Banarescu, 1968a. Nomen- claturally, Rasborina and Danionina were first used as "family group" names by Giinther; to my knowledge the first authors to include both Rasbora and Danio in a single subfamily with a name bascd on one of these genera were Weber and de Beaufort, 1916, who used Rasborinae.) In many cyprinids, as in most characins, the infraorbital bones form an interconnected series of laminar plates around the lower border of the eye, from the lacrimal in front to the dermo- sphenotic postcrodorsally. This series bears the infraorbital sensory canal, which is usually continued into the cranium above the dcrmosphenotic. The infraorbital chain of laminar plates is generally anchored in position relative to the skull anteriorly and 2 Gosline OCC. -
Celestial Pearl Danio", a New Genus and Species of Colourful Minute Cyprinid Fish from Myanmar (Pisces: Cypriniformes)
THE RAFFLES BULLETIN OF ZOOLOGY 2007 55(1): 131-140 Date of Publication: 28 Feb.2007 © National University of Singapore THE "CELESTIAL PEARL DANIO", A NEW GENUS AND SPECIES OF COLOURFUL MINUTE CYPRINID FISH FROM MYANMAR (PISCES: CYPRINIFORMES) Tyson R. Roberts Research Associate, Smithsonian Tropical Research Institute Email: [email protected] ABSTRACT. - Celestichthys margaritatus, a new genus and species of Danioinae, is described from a rapidly developing locality in the Salween basin about 70-80 km northeast of Inle Lake in northern Myanmar. Males and females are strikingly colouful. It is apparently most closely related to two danioins endemic to Inle, Microrasbora rubescens and "Microrasbora" erythromicron. The latter species may be congeneric with the new species. The new genus is identified as a danioin by specializations on its lower jaw and its numerous anal fin rays. The colouration, while highly distinctive, seems also to be characteristically danioin. The danioin notch (Roberts, 1986; Fang, 2003) is reduced or absent, but the danioin mandibular flap and bony knob (defined herein) are present. The anal fin has iiiSVz-lOV: rays. In addition to its distinctive body spots and barred fins the new fish is distinguished from other species of danioins by the following combination of characters: snout and mouth extremely short; premaxillary with an elongate and very slender ascending process; mandible foreshortened; body deep, with rounded dorsal and anal fins; modal vertebral count 15+16=31; caudal fin moderately rather than deeply forked; principal caudal fin rays 9/8; scales vertically ovoid; and pharyngeal teeth conical, in three rows KEY WORDS. - Hopong; principal caudal fin rays; danioin mandibular notch, knob, and pad; captive breeding. -
The AQUATIC DESIGN CENTRE
The AQUATIC DESIGN CENTRE ltd 26 Zennor Road Trade Park, Balham, SW12 0PS Ph: 020 7580 6764 [email protected] PLEASE CALL TO CHECK AVAILABILITY ON DAY Complete Freshwater Livestock (2019) Livebearers Common Name In Stock Y/N Limia melanogaster Y Poecilia latipinna Dalmatian Molly Y Poecilia latipinna Silver Lyre Tail Molly Y Poecilia reticulata Male Guppy Asst Colours Y Poecilia reticulata Red Cap, Cobra, Elephant Ear Guppy Y Poecilia reticulata Female Guppy Y Poecilia sphenops Molly: Black, Canary, Silver, Marble. y Poecilia velifera Sailfin Molly Y Poecilia wingei Endler's Guppy Y Xiphophorus hellerii Swordtail: Pineapple,Red, Green, Black, Lyre Y Xiphophorus hellerii Kohaku Swordtail, Koi, HiFin Xiphophorus maculatus Platy: wagtail,blue,red, sunset, variatus Y Tetras Common Name Aphyocarax paraguayemsis White Tip Tetra Aphyocharax anisitsi Bloodfin Tetra Y Arnoldichthys spilopterus Red Eye Tetra Y Axelrodia riesei Ruby Tetra Bathyaethiops greeni Red Back Congo Tetra Y Boehlkea fredcochui Blue King Tetra Copella meinkeni Spotted Splashing Tetra Crenuchus spilurus Sailfin Characin y Gymnocorymbus ternetzi Black Widow Tetra Y Hasemania nana Silver Tipped Tetra y Hemigrammus erythrozonus Glowlight Tetra y Hemigrammus ocelifer Beacon Tetra y Hemigrammus pulcher Pretty Tetra y Hemigrammus rhodostomus Diamond Back Rummy Nose y Hemigrammus rhodostomus Rummy nose Tetra y Hemigrammus rubrostriatus Hemigrammus vorderwimkieri Platinum Tetra y Hyphessobrycon amandae Ember Tetra y Hyphessobrycon amapaensis Amapa Tetra Y Hyphessobrycon bentosi -
FAMILY Balitoridae Swainson, 1839
FAMILY Balitoridae Swainson, 1839 - hillstream and river loaches [=Balitorinae, Homalopterini, Sinohomalopterini, Homalopteroidini] GENUS Balitora Gray, 1830 - stone loaches [=Sinohomaloptera] Species Balitora annamitica Kottelat, 1988 - annamitica stone loach Species Balitora brucei Gray, 1830 - Gray's stone loach [=anisura, maculata] Species Balitora burmanica Hora, 1932 - Burmese stone loach [=melanosoma] Species Balitora chipkali Kumar et al., 2016 - Kali stone loach Species Balitora eddsi Conway & Mayden, 2010 - Gerwa River stone loach Species Balitora elongata Chen & Li, in Li & Chen, 1985 - elongate stone loach Species Balitora haithanhi Nguyen, 2005 - Gam River stone loach Species Balitora jalpalli Raghavan et al., 2013 - Silent Valley stone loach Species Balitora kwangsiensis (Fang, 1930) - Kwangsi stone loach [=heteroura, hoffmanni, nigrocorpa, songamensis] Species Balitora lancangjiangensis (Zheng, 1980) - Lancangjiang stone loach Species Balitora laticauda Bhoite et al., 2012 - Krishna stone loach Species Balitora longibarbata (Chen, in Zheng et al., 1982) - Yiliang Xian stone loach Species Balitora ludongensis Liu & Chen, in Liu et al., 2012 - Qilong River stone loach Species Balitora meridionalis Kottelat, 1988 - Chan River stone loach Species Balitora mysorensis Hora, 1941 - slender stone loach Species Balitora nantingensis Chen et al., 2005 - Nanting River stone loach Species Balitora nujiangensis Zhang & Zheng, in Zheng & Zhang, 1983 - Nu-Jiang stone loach Species Balitora tchangi Zheng, in Zheng et al., 1982 - Tchang