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Genomics and Population History of Black-Headed Bulbul (Brachypodius Atriceps) Color Morphs
Louisiana State University LSU Digital Commons LSU Doctoral Dissertations Graduate School March 2020 Genomics and Population History of Black-headed Bulbul (Brachypodius atriceps) Color Morphs Subir B. Shakya Louisiana State University and Agricultural and Mechanical College Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_dissertations Part of the Biology Commons Recommended Citation Shakya, Subir B., "Genomics and Population History of Black-headed Bulbul (Brachypodius atriceps) Color Morphs" (2020). LSU Doctoral Dissertations. 5187. https://digitalcommons.lsu.edu/gradschool_dissertations/5187 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Doctoral Dissertations by an authorized graduate school editor of LSU Digital Commons. For more information, please [email protected]. GENOMICS AND POPULATION HISTORY OF BLACK- HEADED BULBUL (BRACHYPODIUS ATRICEPS) COLOR MORPHS A Dissertation Submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College in partial fulfillment of the requirements for the degree of Doctor of Philosophy in The Department of Biological Sciences by Subir B. Shakya B.Sc., Southern Arkansas University, 2014 May 2020 ACKNOWLEDGMENTS A dissertation represents not only the effort of a single candidate but a document highlighting the roles and endeavors of many people and institutions. To this end, I have a lot of people and institutions to thank, without whom this dissertation would never have been completed. First and foremost, I would like to thank my advisor, Dr. Frederick H. Sheldon, who has guided me through the six years of my Ph.D. studies. -
Kenya's Indigenous Forests
IUCN Forest Conservation Programme Kenya's Indigenous Forests Status, Management and Conservation Peter Wass Editor E !i,)j"\|:'\': A'e'±'i,?ai) £ ..X S W..T^ M "t "' mm~:P dmV ../' CEA IUCNThe World Conservation Union Kenya's Indigenous Forests Status, Management and Conservation IUCN — THE WORLD CONSERVATION UNION Founded in 1948, The World Conservation Union brings together States, government agencies and a diverse range of non-governmental organizations in a u nique world partnership : over 800 members in all, spread across some 130 countries. As a Union, IUCN seeks to influence, encourage and assist societies throughout the world to conserve the integrity and diversity of nature and to ensure that any use of natural resources is eq uitable and ecologically sustainable. A central secretariat coordinates the IUCN Programme and serves the Union membership, representing their views on the world stage and providing them with the strategies, servi- ces, scientific knowledge and technical support they need to achieve their goals. Through its six Com- missions, IUCN draws together over 6000 expert volunteers in project teams and action groups, focu- sing in particular on species and biodiversity conservation and the management of habitats and natural resources. The Union has helped many countries to prepare National ConseNation Strategies, and demons- trates the application of its knowledge through the field projects it supervises. Operations are increa- singly decentralized and are carried forward by an expanding network of regional and country offices, located principally in developing countries. The World Conservation Union builds on the strengths of its members, networks and partners to enhance their capacity and to support global alliances to safeguard natural resources at local, regional and global levels. -
Kenya: Birds and Other Wildlife, Custom Trip Report
Kenya: Birds and Other Wildlife, custom trip report August 2014 Silvery-cheeked Hornbill www.birdingecotours.com [email protected] 2 | T R I P R E P O R T Custom Tour Kenya August 2014 Kenya lies across the equator, ranging in altitude from 5199 m to sea level. The country’s topography and climate are highly varied, hence it exhibits many different habitats and vegetation types. Huge populations of wildlife are concentrated in protected areas, mainly national parks, national reserves, and conservancies. However, there are also opportunities to find a wealth of biodiversity in non-protected areas, as for example in Important Bird Areas (IBAs), some of which are found in non-protected areas, while others are located in protected areas. The IBAs provide a good chance to see some of the national or regional endemic species of both flora and fauna. They also provide opportunities for visitors to interact with local populations, which might be sharing their knowledge of indigenous life and traditional lifestyles. Our 15-day safari took us through unique and pristine habitats, ranging from the coastal strip of the Indian Ocean and its dry forest to the expansive savanna bushland of Tsavo East National Park, the semiarid steppes of Samburu National Park in northern Kenya, the mountain range of the Taita Hills, tropical rainforests, and Rift Valley lakes, before ending in the Masai Mara in southwestern Kenya. The variance of these habitats provided unique and rich wildlife diversity. Nairobi The city of Nairobi has much to offer its visitors. The Nairobi National Park is just seven kilometers away from the city and offers lots of wildlife. -
Birding Uganda, Bird Watching Africa Trip Report
Birding Uganda, Bird Watching Africa Trip Report. Uganda - 14th July - 5th August 2004 Published by Graeme and Moira Wallace (dacnis AT mwallace.freeserve.co.uk) Participants: Moira and Graeme Wallace, Edinburgh, Scotland. [email protected] Introduction Spanning the equator and bounded in the west by Africa's Great Rift Valley, Uganda is a country of great natural beauty and geographical diversity. The soaring volcanic peaks of the Virunga and Rwenzori Mountains, a chain of huge inland lakes, the source of the mighty River Nile, large areas of savannah and acacia dotted grassland and large tracts of primary forest which include the western edge of the great Ituri Forest of the Congo Basin and Bwindi Impenetrable Forest, these habitats are home to a great diversity of bird and animal life. Often referred to as the 'Pearl of Africa' Uganda boasts a list of around 1080 bird species including the legendary and monotypic Shoebill probably more accessible here in Uganda than anywhere else in its limited range of the papyrus swamps of east central Africa. The birdlist also contains the very localised Albertine Rift endemics of which 23 out of 24 may be found in Uganda. The country's long established game parks provide refuge to a wonderful assortment of mammals which, although sadly depleted during the Amin years, are now recovering , and its highland forests are home to half or more than half of the world's remaining gorilla population. Always a classic birding destination, the genesis for our trip lay in a chance meeting with Sam Woods in the forest at Rajah Sikatuna National Park on Bohol in the Philippines where he, and we, were searching unsuccessfully for Visayan Broadbill. -
Mabira Degazettement Report.Pdf
Series No. 7 THE ECONOMIC VALUATION OF THE PROPOSED DEGAZETTEMENT OF MABIRA CENTRAL FOREST RESERVE NatureUganda Lead Consultants Dr. Yakobo Moyini Mr. Moses Masiga The Economic Valuation of the Proposed Degazettement of Mabira Central Forest Reserve With support from THE ECONOMIC VALUATION OF THE PROPOSED DEGAZETTEMENT OF MABIRA CENTRAL FOREST RESERVE Reproduction of this publication for educational or other non commercial purposes is authorized only with further written permission from the copyright holder provided the source is fully acknowledged. Production of this publication for resale or other commercial purposes is prohibited without prior written notice of the copyright holder. Citation: NatureUganda (2011). The Economic Valuation of the Proposed Degazettement of Mabira Central Forest Reserve. NatureUganda Kampala Copyright ©NatureUganda – The East Africa Natural History Society P.O.Box 27034, Kampala Uganda Plot 83 Tufnel Drive Kamwokya. Email [email protected] Website: www.natureuganda.org ACKNOWLEDGEMENTS This consultancy builds on NatureUganda earlier studies to identify important biodiversity areas in Uganda or key biodiversity areas. Thirty three (33) Important Bird Areas were identified including Mabira Forest Reserve. In this study, we make a case that policy formulation about natural resources needs to be informed with facts in the present and full knowledge of the future or predicted long term consequences. We are grateful to BirdLife International Partnership particularly Royal Society for the Protection of Birds (RSPB) whose initial support enabled NatureUganda to undertake this study on the economic evaluation of a section of Mabira Forest Reserve that was proposed for Degazzettement. The research work falls under our advocacy programme supported by various partners including BirdLife International through Jansen’s Foundation programme on ‘turning policy advantages into conservation gains’. -
Effects of Forestry Practices on Vegetation Structure and Bird
Biological Conservation 107 (2002) 229–240 www.elsevier.com/locate/biocon Effects of forestry practices on vegetation structure and bird community of Kibale National Park, Uganda Cagan H. Sekercioglu* Center for Conservation Biology, Department of Biological Sciences, Stanford University, Stanford, CA 94305-5020, USA Received 12 September 2001; received in revised form 8 January 2002; accepted 12 February 2002 Abstract I examined the lingering effects of past timber management practices on the vegetation structure and bird community of Kibale National Park, Uganda. I compared four forest treatments: unlogged native forest (UL), two that were selectively logged at low (LL) and high (HL) intensities in the 1960s, and a conifer plantation (PL). Forest-dependent birds were best represented at UL. LL was similar to UL in both vegetation structure and bird community composition, although some forest-dependent bird species were missing from the former. HL had significantly less canopy closure and lower tree density than other plots as a result of the combi- nation of extensive secondary damage and natural disturbance patterns that prevented the reclosure of the forest canopy. Thirty-one percent of the forest-dependent bird species observed during the study were not detected at HL. At PL, bird species richness and bird abundance were about a third of those observed in other plots. There were significant correlations between heterogeneity of tree distribution (horizontal heterogeneity) and abundance and species richness of birds across plots. Abundance and species richness of all, forest-dependent, and forest generalist birds were highest in plots with intermediate measures of horizontal heterogeneity, which were mostly unlogged or lightly logged. -
Kenya November 2019
Tropical Birding Trip Report KENYA NOVEMBER 2019 Kenya: The Coolest Trip in Africa 10th – 26th November, 2019 TOUR LEADER: Charley Hesse. Report & photos by Charley Hesse. All photos were taken on this tour. Kenya offers a wide variety of landscapes and habitats with a corresponding long list of bird and mammal species. We started this tour in Kenya’s capital Nairobi, and the Nairobi National Park where we saw dancing Grey Crowned Cranes and an amazing 9 species of cisticola in a day, with the bizarre backdrop of the city’s skyline. We dipped down the Magadi road into very dry scrub with a totally different set of species like Fischer’s Sparrow-Larks & Cut- throats. From Nairobi we drove to the foothills of Mt Kenya and in the lush montane forest saw the huge Crowned Eagle and verdant Hartlaub’s Turaco. Next, we visited the Aberdares NP and explored the alpine moorland where we saw the huge Jackson’s Francolin and endemic Aberdare Cisticola. At the bizarre Ark Lodge, we saw Giant Forest Hog, plus genets and galago at night. We dropped down from the highlands into the great rift valley and explored Lake Nakuru and Lake Naivasha with their myriad of water birds. The boat ride at Lake Naivasha was particularly good for photography. On to Lake Baringo with its amazing local guides who have many great birds staked out including owls, nightjars and coursers. Another boat ride produced White-backed Night-Heron and Northern Carmine Bee-eater. At Kakamega we explored the lush forest and found specialties like turacos, robin- chats, batises and the African Broadbill. -
Uganda and Rwanda: Shoebill Experience, Nyungwe’S Albertine Rift and Great Apes
MEGAFARI 2: Uganda and Rwanda: Shoebill experience, Nyungwe’s Albertine Rift and Great Apes 27 July – 7 August 2010 (12 days), Leader: Keith Barnes, Custom trip Photos by Keith Barnes. All photos taken on this trip. The spectacular Green-breasted Pitta was the star of the show in Uganda. We found only the sixth-ever nest of this species and spent a few hours with it gathering valuable information on the breeding biology of this species. Here a male droops his wings and displays to a female on the ground. Introduction This was the first leg of our second Megafari of 2010 – a true trip of a lifetime for most of the participants. The main aims of the Uganda and Rwanda leg was to see a Shoebill stalking in deep Papyrus swamps, attempt to see the most unlikely scarce Central African denizen, Green-breasted Pitta, score a gamut of rainforest birds in both the lowlands of Kibale NP and then also the impressive montane forests of the incredible Nyungwe NP, and to see primates, and of course, the irrepressible great apes, Chimpanzee and Mountain Gorilla. Fortunately, we achieved all these aims, netting 346 bird species on this 12-day leg of the trip, of which only 9 were spent birding, as well as accumulating an incredible 652 bird species and 60 mammals in just over four-weeks of the Megafari. The Megafari was a boon for spectacular birds and we saw 32 species of bird of prey, 8 species of turaco, 7 species of kingfisher, 8 species of bee-eater, 9 species of hornbill, and 28 species of sunbird. -
Ultimate Uganda
The extraordinaire Shoebill gave fantastic views during the tour. (DLV. All photos taken by DLV and Bradley Hacker) ULTIMATE UGANDA 15/20 JULY (RWANDA EXTENSION) – 8 AUGUST 2018 LEADER: DANI LOPEZ-VELASCO and LIVINGSTONE KALEMA 1 BirdQuest Tour Report: Ultimate Uganda www.birdquest-tours.com For any world-travelling birder, a visit to Uganda should definitely be on the agenda. Why? The fabulous Shoebill is probably a good-enough reason to visit this magical, friendly and welcoming country, but there are many more, including a good selection of Albertine Rift endemics, with such megas as Grauer´s Broadbill or Green-breasted Pitta, as well as other difficult western African forest species. Together with some great mammal watching, with of course primates as the icing of the cake, in particular the mighty Eastern Gorillas and Chimpanzees. Combined with excellent accommodation and food, impressive scenery and a good road network, it´s easy to understand why this African country is undoubtedly one of my favourites in the whole world! Rwanda has a lot to offer too, Nyungwe forest is a wonderful and very birdy place, and in the bird front, the unique Red-collared Mountain Babbler stands out. By visiting the 2 countries, any visiting birder greatly increases the chances of seeing a very good selection of Albertine Rift endemics. This wonderful and rarely seen Green-breasted Pitta was one of the highlights of the tour. This year´s tour was, with over 580 species recorded, packed with highlights, but several stand out: Shoebill, of course, was one of the birds of the trip, and we succeeded in getting walk-away views both at Mabamba and Murchison Falls NP. -
Kenya: the Coolest Trip in Africa, May 2016
Tropical Birding Trip Report Kenya: The Coolest Trip in Africa, May 2016 Kenya: The Coolest Trip in Africa 12-28 May 2016 TOUR LEADER: Adam Scott Kennedy Report and photos by Adam Scott Kennedy Gray Crowned Crane in Nairobi National Park Kenya is a mind-blowing birding destination at any time of year but it would seem that our May departure was especially well-timed. Not only did we enjoy the best weather imaginable but we arrived in time to see a majority of resident birds in full breeding plumage, intra-African migrants just arriving and we even caught the tail-end of the Palearctic migration. This classic set departure tour covered a vast array of habitats to be found within Kenya, from the verdant Guinea-Congolese rainforest at Kakamega and the Afro-montane forests of Mount Kenya, the very full Rift Valley lakes and papyrus swamps of Lake Victoria, to the endless plains of the Masai Mara. In total, we recorded 413 bird species of which 398 were seen and 15 were ‘heard only’. In addition, we observed 43 mammal species and 10 reptiles were also noted. www.tropicalbirding.com +1-409-515-9110 [email protected] Tropical Birding Trip Report Kenya: The Coolest Trip in Africa, May 2016 12th May Tom and Suzanne negotiated Kenya customs with diplomatic acuity and were promptly delivered to the Boma Inn by Joseph. After a much needed drink, we turned in for the night and began to dream of what was to come… 13th May The group rendezvoused in the small garden of the Boma Inn for a first taste of African bird life. -
Uganda / Rwanda
Uganda / Rwanda 28 Jan - 23 Feb 2009 Erling Jirle (compilation) Bengt-Eric Sjölinder Ola Elleström Joakim Johansson Nils Kjellén Jonas Rosquist GENERAL INFO By Erling Jirle Introduction "In terms of its size, Uganda is the richest country for birds in Africa. " (Nigel Wheatley, Where to Watch Birds in Africa.1995). This immense volume and diversity occurs miraculously in a space, which keen birders can cover in a relatively short visit. "Uganda is arguably the best country in Africa for birds, with about 1000 species recorded in an area the size of Great Britain." (Philip Briggs). This was a private trip with a group of Swedish bird-watchers, we call our team Joerl Travels. The trip was a combination of leisurely classical East African savannah game drives, canoeing in swamps and hardcore rainforest birding for Albert Rift Valley endemics and Congo Basin endemics. We covered most of Uganda and Rwanda in 24 birding days. Some days included a lot of travelling in slow pace on bad roads. But in west Uganda the distances between the sites are short. The Rwandan roads are generally in better shape than in Uganda. The standard of accommodation varied between top class safari lodges to simple bandas without electricity. See full details on the website chapter “localities and accommodations” at http://www.pheromone.ekol.lu.se/uganda/accomodation.html On the trip website you also find country facts, detailed site info with links, good trip reports and more. Avian Watch Uganda Ltd. in Kampala arranged the trip. Our guide during most of the trip was Alfred Twinomujuni, except the last 3 days, when our driver Johnny acted as guide, driver and mechanic! Erling Jirle and Bengt-Eric Sjölinder discussed the details on the itinerary and made some adjustments to Alfred’s suggestions, before the trip. -
Ultimate Uganda
The stunning Green-breasted Pitta was the bird of the trip. (Dani Lopez-Velasco. All photos taken during the tour by the same author) ULTIMATE UGANDA 1 – 21/25 JUNE 2014 LEADER: DANI LOPEZ VELASCO For any world-travelling birder, a visit to Uganda should definitely be on the agenda. Why? The extraordinaire Shoebill is probably a good-enough reason to visit this magical, friendly and welcoming country, but there are many more, including a good selection of Albertine Rift endemics, with such megas as Grauer’s Broadbill or Green-breasted Pitta, as well as other difficult western African forest species. Together with some great mammal watching, with of course primates as the icing of the cake, in particular the pretty much guaranteed close encounters with the mighty Eastern Gorillas and Chimpanzees. Combined with excellent accommodation and food, impressive scenery and a good road network, it’s easy to understand why this African country is undoubtedly one of my favourites in the whole world! This year’s tour was, as usual, packed with highlights, but several stand out: Shoebill, of course, was one of the birds of the trip, and we succeeded in seeing it at three different places, including walk-away views at Murchison Falls NP. A stunning male Green-breasted Pitta was watched in the scope, in full display, for more than half an hour, at Kibale, while a at least 4 of the near-mythical Grauer’s (African Green) Broadbills 1 BirdQuest Tour Report: Ultimate Uganda www.birdquest-tours.com were watched at length near their nest at Bwindi Impenetrable Forest.