The Information Content of Local Field Potentials: Experiments and Models
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Novel Methods for Assessing Electrophysiological Function of Cardiac and Neural 3D Cell Cultures with MEA Technology
. Novel methods for assessing electrophysiological function of cardiac and neural 3D cell cultures with MEA technology Anthony Nicolini, Denise Sullivan, Heather Hayes, Andrew Wilsie, Rob Grier, Daniel Millard Axion BioSystems, Atlanta, GA Multiwell MEA Technology MEA Assay with Cardiomyocytes MEA Assay with Neurons Microelectrode array technology Functional Cardiac Phenotypes Functional Neuronal Phenotypes The flexibility and accessibility of neuronal and The need for simple, reliable, and predictive pre-clinical assays for drug discovery (e.g. “disease-in-a-dish” AxIS Navigator analysis software provides straightforward reporting of multiple measures of cell culture maturity. cardiac in vitro models, particularly induced models) and safety have motivated the development of 2D and 3D in vitro models with human stem cell- pluripotent stem cell (iPSC) technology, has allowed (a) (c) Action derived cardiomyocytes. The Maestro MEA platform enables assessment of functional in vitro cardiomyocyte complex human biology to be reproduced in vitro at Potential activity with an easy-to-use benchtop system. The Maestro detects and records signals from cells cultured unimaginable scales. Accurate characterization of directly onto an array of planar electrodes in each well of the MEA plate, with each of the following four modes Field neurons and cardiomyocytes requires an assay that providing critical information for in vitro assessment: Potential provides a functional phenotype. Measurements of electrophysiological activity across a networked • Field Potential – “gold standard” measurement for multiwell cardiac electrophysiology. population offer a comprehensive characterization Clinical • Action Potential – first scalable technique for acquiring action potential signals from intact cardiac models. beyond standard genomic and biochemical ECG • Propagation – detect speed and direction of action potential propagation. -
Cognitive Map Formation Through Sequence Encoding by Theta Phase Precession
LETTER Communicated by A. David Redish Cognitive Map Formation Through Sequence Encoding by Theta Phase Precession Hiroaki Wagatsuma [email protected] Laboratory for Dynamics of Emergent Intelligence, RIKEN BSI, Wako-shi, Saitama 351-0198, Japan Yoko Yamaguchi [email protected] Laboratory for Dynamics of Emergent Intelligence, RIKEN BSI, Wako-shi, Saitama 351- 0198, Japan; College of Science and Engineering, Tokyo Denki University, Hatoyama, Saitama 350-0394, Japan; and CREST, Japan Science and Technology Corporation The rodent hippocampus has been thought to represent the spatial en- vironment as a cognitive map. The associative connections in the hip- pocampus imply that a neural entity represents the map as a geometrical network of hippocampal cells in terms of a chart. According to recent experimental observations, the cells fire successively relative to the theta oscillation of the local field potential, called theta phase precession, when the animal is running. This observation suggests the learning of temporal sequences with asymmetric connections in the hippocampus, but it also gives rather inconsistent implications on the formation of the chart that should consist of symmetric connections for space coding. In this study, we hypothesize that the chart is generated with theta phase coding through the integration of asymmetric connections. Our computer experiments use a hippocampal network model to demonstrate that a geometrical network is formed through running experiences in a few minutes. Asymmetric connections are found to remain and dis- tribute heterogeneously in the network. The obtained network exhibits the spatial localization of activities at each instance as the chart does and their propagation that represents behavioral motions with multidirec- tional properties. -
Position–Theta-Phase Model of Hippocampal Place Cell Activity Applied to Quantification of Running Speed Modulation of Firing Rate
Position–theta-phase model of hippocampal place cell activity applied to quantification of running speed modulation of firing rate Kathryn McClaina,b,1, David Tingleyb, David J. Heegera,c,1, and György Buzsákia,b,1 aCenter for Neural Science, New York University, New York, NY 10003; bNeuroscience Institute, New York University, New York, NY 10016; and cDepartment of Psychology, New York University, New York, NY 10003 Edited by Terrence J. Sejnowski, Salk Institute for Biological Studies, La Jolla, CA, and approved November 18, 2019 (received for review July 24, 2019) Spiking activity of place cells in the hippocampus encodes the Another challenge in understanding this system is the dynamic animal’s position as it moves through an environment. Within a interaction between the rate code and phase code. As these codes cell’s place field, both the firing rate and the phase of spiking in combine, different formats of information are conveyed simulta- the local theta oscillation contain spatial information. We propose a neously in place cell spiking. The interaction can produce unin- – position theta-phase (PTP) model that captures the simultaneous tuitive, although entirely predictable, results in traditional analyses expression of the firing-rate code and theta-phase code in place cell of place cell activity. These practical challenges have hindered the spiking. This model parametrically characterizes place fields to com- pare across cells, time, and conditions; generates realistic place cell effort to explain variability in hippocampal firing rates. A com- simulation data; and conceptualizes a framework for principled hy- putational tool is needed that accounts for the well-established pothesis testing to identify additional features of place cell activity. -
Neural Mechanism to Simulate a Scale-Invariant Future Timeline
Neural mechanism to simulate a scale-invariant future Karthik H. Shankar, Inder Singh, and Marc W. Howard1 1Center for Memory and Brain, Initiative for the Physics and Mathematics of Neural Systems, Boston University Predicting future events, and their order, is important for efficient planning. We propose a neural mechanism to non-destructively translate the current state of memory into the future, so as to construct an ordered set of future predictions. This framework applies equally well to translations in time or in one-dimensional position. In a two-layer memory network that encodes the Laplace transform of the external input in real time, translation can be accomplished by modulating the weights between the layers. We propose that within each cycle of hippocampal theta oscillations, the memory state is swept through a range of translations to yield an ordered set of future predictions. We operationalize several neurobiological findings into phenomenological equations constraining translation. Combined with constraints based on physical principles requiring scale-invariance and coherence in translation across memory nodes, the proposition results in Weber-Fechner spacing for the representation of both past (memory) and future (prediction) timelines. The resulting expressions are consistent with findings from phase precession experiments in different regions of the hippocampus and reward systems in the ventral striatum. The model makes several experimental predictions that can be tested with existing technology. I. INTRODUCTION The brain encodes externally observed stimuli in real time and represents information about the current spatial location and temporal history of recent events as activity distributed over neural networks. Although we are physi- cally localized in space and time, it is often useful for us to make decisions based on non-local events, by anticipating events to occur at distant future and remote locations. -
A Temporal Mechansism for Generating the Phase Precession Of
Journal of Computational Neuroscience 9, 5–30, 2000 °c 2000 Kluwer Academic Publishers. Manufactured in The Netherlands. A Temporal Mechanism for Generating the Phase Precession of Hippocampal Place Cells AMITABHA BOSE, VICTORIA BOOTH AND MICHAEL RECCE Department of Mathematical Sciences, Center for Applied Mathematics and Statistics, New Jersey Institute of Technology, Newark, NJ, 07102-1982 [email protected] Received December 1, 1998; Revised June 21, 1999; Accepted June 25, 1999 Action Editor: John Rinzel Abstract. The phase relationship between the activity of hippocampal place cells and the hippocampal theta rhythm systematically precesses as the animal runs through the region in an environment called the place field of the cell. We present a minimal biophysical model of the phase precession of place cells in region CA3 of the hippocampus. The model describes the dynamics of two coupled point neurons—namely, a pyramidal cell and an interneuron, the latter of which is driven by a pacemaker input. Outside of the place field, the network displays a stable, background firing pattern that is locked to the theta rhythm. The pacemaker input drives the interneuron, which in turn activates the pyramidal cell. A single stimulus to the pyramidal cell from the dentate gyrus, simulating entrance into the place field, reorganizes the functional roles of the cells in the network for a number of cycles of the theta rhythm. In the reorganized network, the pyramidal cell drives the interneuron at a higher frequency than the theta frequency, thus causing a systematic precession relative to the theta input. The frequency of the pyramidal cell can vary to account for changes in the animal’s running speed. -
Theta Phase Precession Beyond the Hippocampus
Theta phase precession beyond the hippocampus Authors: Sushant Malhotra1,2y, Robert W. A. Cross1y, Matthijs A. A. van der Meer1,3* 1Department of Biology, University of Waterloo, Ontario, Canada 2Systems Design Engineering, University of Waterloo 3Centre for Theoretical Neuroscience, University of Waterloo yThese authors contributed equally. *Correspondence should be addressed to MvdM, Department of Biology, University of Waterloo, 200 Uni- versity Ave W, Waterloo, ON N2L 3G1, Canada. E-mail: [email protected]. Running title: Phase precession beyond the hippocampus 1 Abstract The spike timing of spatially tuned cells throughout the rodent hippocampal formation displays a strikingly robust and precise organization. In individual place cells, spikes precess relative to the theta local field po- tential (6-10 Hz) as an animal traverses a place field. At the population level, theta cycles shape repeated, compressed place cell sequences that correspond to coherent paths. The theta phase precession phenomenon has not only afforded insights into how multiple processing elements in the hippocampal formation inter- act; it is also believed to facilitate hippocampal contributions to rapid learning, navigation, and lookahead. However, theta phase precession is not unique to the hippocampus, suggesting that insights derived from the hippocampal phase precession could elucidate processing in other structures. In this review we consider the implications of extrahippocampal phase precession in terms of mechanisms and functional relevance. We focus on phase precession in the ventral striatum, a prominent output structure of the hippocampus in which phase precession systematically appears in the firing of reward-anticipatory “ramp” neurons. We out- line how ventral striatal phase precession can advance our understanding of behaviors thought to depend on interactions between the hippocampus and the ventral striatum, such as conditioned place preference and context-dependent reinstatement. -
Intrinsic Dendritic Filtering Gives Low-Pass Power Spectra of Local Field Potentials
J Comput Neurosci DOI 10.1007/s10827-010-0245-4 Intrinsic dendritic filtering gives low-pass power spectra of local field potentials Henrik Lindén · Klas H. Pettersen · Gaute T. Einevoll Received: 31 August 2009 / Revised: 30 March 2010 / Accepted: 6 May 2010 © Springer Science+Business Media, LLC 2010 Abstract The local field potential (LFP) is among the the LFP. The frequency dependence of the properties most important experimental measures when probing of the current dipole moment set up by the synaptic in- neural population activity, but a proper understanding put current is found to qualitatively account for several of the link between the underlying neural activity and salient features of the observed LFP. Two approximate the LFP signal is still missing. Here we investigate this schemes for calculating the LFP, the dipole approxima- link by mathematical modeling of contributions to the tion and the two-monopole approximation, are tested LFP from a single layer-5 pyramidal neuron and a and found to be potentially useful for translating results single layer-4 stellate neuron receiving synaptic input. from large-scale neural network models into predic- An intrinsic dendritic low-pass filtering effect of the tions for results from electroencephalographic (EEG) LFP signal, previously demonstrated for extracellular or electrocorticographic (ECoG) recordings. signatures of action potentials, is seen to strongly affect the LFP power spectra, even for frequencies as low as Keywords Local field potential · Single neuron · 10 Hz for the example pyramidal neuron. Further, the Forward modeling · Frequency dependence · EEG LFP signal is found to depend sensitively on both the recording position and the position of the synaptic in- put: the LFP power spectra recorded close to the active synapse are typically found to be less low-pass filtered 1 Introduction than spectra recorded further away. -
Hebbian and Neuromodulatory Mechanisms Interact to Trigger
Hebbian and neuromodulatory mechanisms interact to PNAS PLUS trigger associative memory formation Joshua P. Johansena,b,c,1,2, Lorenzo Diaz-Mataixc,1, Hiroki Hamanakaa, Takaaki Ozawaa, Edgar Ycua, Jenny Koivumaaa, Ashwani Kumara, Mian Houc, Karl Deisserothd,e, Edward S. Boydenf, and Joseph E. LeDouxc,g,2 aLaboratory for Neural Circuitry of Memory, RIKEN Brain Science Institute, Wako, Saitama 351-0198, Japan; bDepartment of Life Sciences, Graduate School of Arts and Sciences, University of Tokyo, Tokyo 153-0198, Japan; cCenter for Neural Science, New York University, New York, NY 10003; dDepartment of Bioengineering, Department of Psychiatry and Behavioral Sciences, and eHoward Hughes Medical Institute, Stanford University, Stanford, CA 94305; fMcGovern Institute for Brain Research, Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139; and gThe Emotional Brain Institute, Nathan Kline Institute for Psychiatric Research, Orangeburg, NY 10962 Contributed by Joseph E. LeDoux, November 7, 2014 (sent for review March 11, 2014) A long-standing hypothesis termed “Hebbian plasticity” suggests auditory threat (fear) conditioning (23, 24) is a form of asso- that memories are formed through strengthening of synaptic con- ciative learning during which a neutral auditory conditioned nections between neurons with correlated activity. In contrast, stimulus (CS) is temporally paired with an aversive unconditioned other theories propose that coactivation of Hebbian and neuro- stimulus (US), often a mild electric shock (17, 20, 21, 25–27). modulatory processes produce the synaptic strengthening that Following training, the auditory CS comes to elicit behavioral underlies memory formation. Using optogenetics we directly tested defense responses (such as freezing) and supporting physiologi- whether Hebbian plasticity alone is both necessary and sufficient to cal changes controlled by the autonomic nervous and endocrine produce physiological changes mediating actual memory formation systems. -
Dendritic Spiking Accounts for Rate and Phase Coding in a Biophysicalmodelof a Hippocampal Place Cell
ARTICLE IN PRESS Neurocomputing 65–66 (2005) 331–341 www.elsevier.com/locate/neucom Dendritic spiking accounts for rate and phase coding in a biophysicalmodelof a hippocampal place cell Zso´ fia Huhna,Ã,Ma´ te´ Lengyela,b, Gergo+ Orba´ na,Pe´ ter E´ rdia,c aDepartment of Biophysics, KFKI Research Institute for Particle and Nuclear Physics, Hungarian Academy of Sciences, 29-33 Konkoly Thege M. u´t, Budapest H-1121, Hungary bGatsby Computational Neuroscience Unit, University College London, 17 Queen Square, London WC1N 3AR, UK cCenter for Complex Systems Studies, Kalamazoo College, 1200 Academy street, Kalamazoo, MI 49006-3295, USA Available online 15 December 2004 Abstract Hippocampal place cells provide prototypical examples of neurons jointly firing phase and rate-coded spike trains. We propose a biophysicalmechanism accounting for the generation of place cell firing at the single neuron level. An interplay between external theta-modulated excitation impinging the dendrite and intrinsic dendritic spiking as well as between frequency- modulated dendritic spiking and somatic membrane potential oscillations was a key element of the model. Through these interactions robust phase and rate-coded firing emerged in the model place cell, reproducing salient experimentally observed properties of place cell firing. r 2004 Elsevier B.V. All rights reserved. Keywords: Phase precession; Tuning curve; Active dendrite ÃCorresponding author. Fax: +36 1 3922222. E-mail address: zsofi@rmki.kfki.hu (Z. Huhn). 0925-2312/$ - see front matter r 2004 Elsevier B.V. All rights reserved. doi:10.1016/j.neucom.2004.10.026 ARTICLE IN PRESS 332 Z. Huhn et al. / Neurocomputing 65–66 (2005) 331–341 1. -
Phase Precession of Medial Prefrontal Cortical Activity Relative to the Hippocampal Theta Rhythm
HIPPOCAMPUS 15:867–873 (2005) Phase Precession of Medial Prefrontal Cortical Activity Relative to the Hippocampal Theta Rhythm Matthew W. Jones and Matthew A. Wilson* ABSTRACT: Theta phase-locking and phase precession are two related spike-timing and the phase of the concurrent theta phenomena reflecting coordination of hippocampal place cell firing cycle: place cell spikes are ‘‘phase-locked’’ to theta with the local, ongoing theta rhythm. The mechanisms and functions of both the phenomena remain unclear, though the robust correlation (Buzsaki and Eidelberg, 1983). Thus, the spikes of a between firing phase and location of the animal has lead to the sugges- given neuron are not distributed randomly across the tion that this phase relationship constitutes a temporal code for spatial theta cycle. Rather, they consistently tend to occur information. Recent work has described theta phase-locking in the rat during a restricted phase of the oscillation. Further- medial prefrontal cortex (mPFC), a structure with direct anatomical and more, in CA1, CA3, and the dentate gyrus, phase- functional links to the hippocampus. Here, we describe an initial char- locking to the local theta rhythm is accompanied by acterization of phase precession in the mPFC relative to the CA1 theta rhythm. mPFC phase precession was most robust during behavioral the related phenomenon of phase precession: each epochs known to be associated with enhanced theta-frequency coordi- neuron tends to fire on progressively earlier phases of nation of CA1 and mPFC activities. Precession was coherent across the the concurrent theta cycle as an animal moves through mPFC population, with multiple neurons precessing in parallel as a func- its place field (O’Keefe and Recce, 1993). -
Independent Components Analysis of Local Field Potential Sources in the Primate Superior Colliculus
Independent Components Analysis of Local Field Potential Sources in the Primate Superior Colliculus by Yu Liu B.S. in Telecommunication Engineering, Nanjing University of Posts and Telecommunications, 2017 Submitted to the Graduate Faculty of the Swanson School of Engineering in partial fulfillment of the requirements for the degree of Master of Science University of Pittsburgh 2019 UNIVERSITY OF PITTSBURGH SWANSON SCHOOL OF ENGINEERING This thesis was presented by Yu Liu It was defended on July 17, 2019 and approved by Ahmed Dallal, Ph.D., Assistant Professor, Department of Electrical and Computer Engineering Neeraj Gandhi, Ph.D., Professor, Department of Bioengineering Amro El-Jaroudi, Ph.D., Associate Professor, Department of Electrical and Computer Engineering Zhi-Hong Mao, Ph.D., Professor, Department of Electrical and Computer Engineering Thesis Advisors: Ahmed Dallal, Ph.D., Assistant Professor, Department of Electrical and Computer Engineering, Neeraj Gandhi, Ph.D., Professor, Department of Bioengineering ii Copyright c by Yu Liu 2019 iii Independent Components Analysis of Local Field Potential Sources in the Primate Superior Colliculus Yu Liu, M.S. University of Pittsburgh, 2019 When visually-guided eye movements (saccades) are produced, some signal-available elec- trical potentials are recorded by electrodes in the superior colliculus (SC), which is ideal to investigate communication between the different layers due to the laminar organization and structured anatomical connections within SC. The first step to realize this objective is iden- tifying the location of signal-generators involved in the procedure. Local Field Potential (LFP), representing a combination of the various generators measured in the vicinity of each electrodes, makes this issue as similar as blind source separation problem. -
Phase-‐Of-‐Firing Code
PHASE-OF-FIRING CODE Anna Cattania, Gaute T. Einevollb,c, Stefano Panzeria* a Center for Neuroscience and Cognitive Systems @UniTn, Istituto Italiano di Tecnologia, 38068 Rovereto, Italy b Department of Mathematical Sciences and Technology, Norwegian University of Life Sciences, 1432 Ås, Norway c Department of Physics, University of Oslo, 0316 Oslo, Norway * Corresponding author: [email protected] DEFINITION The phase-of-firing code is a neural coding scheme whereby neurons encode information using the time at which they fire spikes within a cycle of the ongoing oscillatory pattern of network activity. This coding scheme may allow neurons to use their temporal pattern of spikes to encode information that is not encoded in their firing rate. DETAILED DESCRIPTION In this entry, we define phase-of-firing coding, and we outline its properties. We first review early results that suggested the importance of temporal coding, and then we elucidate the insights concerning the central role of phase-of-firing coding in the studies of encoding of spatial variables in the hippocampus and of natural visual stimuli in primary visual and auditory cortices. The phase-of-firing code is a temporal coding scheme that uses the timing of spikes with respect to network fluctuations to encode information about some variables of interest (such as the identity of an external sensory stimulus) that is not encoded by the firing rates of these neurons (Perkel and Bullock, 1968). Figure 1 shows a schematic representation of both a phase-of-firing code and of a firing-rate code (i.e. a code that uses only the total number of spikes fired by the neuron to transmit information).