CODON PARTITION TIGER PARTITION

SIR14GEO Setina irrorella SIR14GEO Setina irrorella AMSP13GE1 Amata sp. AMSP13GE1 Amata sp.

94 MM05671 Coscinia cribraria MM05671 Coscinia cribraria 94 DNA1252 Tyria jacobaeae DNA1252 Tyria jacobaeae 73 78 NSGJZ017 Aglaomorpha histrio NSGJZ017 Aglaomorpha histrio 92 95 CPUD13SPA Cymbalophora pudica CPUD13SPA Cymbalophora pudica 95 92 JMZI001 Haploa reversa JMZI001 Haploa reversa

75 100 KN00905 Euplagia splendidior KN00905 Euplagia splendidior 100 88

70 NSGJZ003 Euplagia quadripunctata NSGJZ003 Euplagia quadripunctata 52 CDOM14FIN Callimorpha dominula CDOM14FIN Callimorpha dominula 100 100 100 CDOM14GE1 Callimorpha dominula CDOM14GE1 Callimorpha dominula 100 RZ136 Callimorpha dominula RZ136 Callimorpha dominula NSGJZ021 Secusio doriae NSGJZ021 Secusio doriae 100 100 89 RZ387 Nyctemera baulus NSGJZ008 Nyctemera adversata 90 98 NSGJZ008 Nyctemera adversata RZ387 Nyctemera baulus 100 KC33 immaculata KC33 Virbia immaculata 100 100 99 JZ000 Virbia fragilis KC11 100 69 KC11 Virbia opella JZ000 Virbia fragilis 61 RZ30 Creatonotos transiens RZ30 Creatonotos transiens 99 100 NSGJZ009 Chionarctia nivea NSGJZ009 Chionarctia nivea 81 72 CNLEP113666 Pyrrharctia isabella CNLEP113666 Pyrrharctia isabella 100 100 100 100 81 NSGJZ011 Phragmatobia amuriensis KN00881 Amurrhyparia leopardinula 85 KN00881 Amurrhyparia leopardinula NSGJZ011 Phragmatobia amuriensis SCDNA169 picta SCDNA169 Arachnis picta 99 CR055 laeta CR055 Hypercompe laeta 61 56 97 100 T1 Estigmene tenuistrigata T1 Estigmene tenuistrigata 100 M5 Spilosomina sp M5 Spilosomina sp 16 77 31 76 KN00900 Sinowatsonia hoenei KN00900 Sinowatsonia hoenei 74 73 96 KN00902 Nannoarctia tripartita OSCHLEINI14 Olepa schleini 99 OSCHLEINI14 Olepa schleini KN00902 Nannoarctia tripartita 82 85 30 KN00901 Eospilarctia pauper ALAT15KK Artimelia latrellei 37 ALAT15KK Artimelia latrellei KN00901 Eospilarctia pauper CRUF15SPA Canararctia rufescens CRUF15SPA Canararctia rufescens 3231 1929 W72 Hyphantria cunea W72 Hyphantria cunea 98 99 65 SCDNA81 virginica W13 Estigmene acrea 76 28 W13 Estigmene acrea SCDNA81 25 100 100 KN00899 Murzinarctia x album MM07409 luteum 100 MM07409 Spilarctia luteum KN00899 Murzinarctia x album 65 67 100 TTAM15MOR Spilosomina sp TTAM15MOR Spilosomina sp 85 82 MM01038 Spilosoma lubricipedum MM01038 Spilosoma lubricipedum 97 94 100 OZOR13SPA Ocnogyna zoraida MM07688 Diaphora mendica 100 MM07688 Diaphora mendica OZOR13SPA Ocnogyna zoraida MM12598 Diacrisia sannio KN00885 Sibirarctia kindermanni 97 100 72 MM08356 KN00887 Sibirarctia buraetica NSGJZ014 Rhyparioides amurensis KN00882 czekanowskii 97 KN00882 Hyperborea czekanowskii CARR13SPA Chelis arragonensis 99 99 KN00885 Sibirarctia kindermanni KN00904 Chelis simplonica 59 76 99 KN00887 Sibirarctia buraetica CCAE11GRE Chelis caecilia 75 97 CMAC10RUS CDAH10RU1 100 48 44 100 CDAH10RU1 Chelis dahurica CMAC10RUS Chelis maculosa CCAE11GRE Chelis caecilia KN00889 Palearctia glaphyra 88 57 57 58 CARR13SPA Chelis arragonensis KN00898 Palearctia hauensteini 60 KN00904 Chelis simplonica KN00888 Centrarctia mongolica 99 97 88 KN00898 Palearctia hauensteini KN00877 Tancrea pardalina 39 KN00889 Palearctia glaphyra CNLEP113661 beani 100 76 94 97 KN00877 Tancrea pardalina CNLEP113660 Neoarctia brucei 65 KN00888 Centrarctia mongolica KN00878 Holoarctia cervini 100 47 100 CNLEP113661 Neoarctia beani HPUE12SUE Holoarctia puengeleri 80 CNLEP113660 Neoarctia brucei MM12598 Diacrisia sannio 39 100 99 KN00878 Holoarctia cervini MM08356 Rhyparia purpurata 80 HPUE12SUE Holoarctia puengeleri NSGJZ014 Rhyparioides amurensis

98 CNLEP113669 Holarctia obliterata CNLEP113669 Holarctia obliterata 96 KN00884 obliterata KN00884 Grammia obliterata CNLEP113672 CNLEP113672 Grammia arge 99 9959 68 100 CNLEP113667 nais CNLEP113667 100 35 98 CNLEP113679 proxima CNLEP113679 Notarctia proxima 96 CNLEP113670 CNLEP113670 Grammia williamsii

100 78 MM10596 CNLEP113678 94 99

56 CNLEP113678 Grammia incorrupta MM10596 Grammia quenseli 76 CNLEP113671 Grammia parthenice CNLEP113671 Grammia parthenice 90 97 58 97 CNLEP113665 SCDNA83 97 61 SCDNA83 Apantesis vittata CNLEP113665 Grammia virguncula KN00880 Micrarctia trigona KN00880 Micrarctia trigona

100 AFESIRAN festiva AFESIRAN 100 91 AFES10RUS Arctia festiva AFES10RUS Arctia festiva 93 100 GEO13 2.2 plantaginis GEO13 2.2 Parasemia plantaginis 100 BULDOR001 Parasemia plantaginis BULDOR001 Parasemia plantaginis 92 91 HDEJ14SP2 dejeani HDEJ14SP2 84 100 100 81 100 MM08779 HTES14ITA 100

95 HTES14ITA Hyphoraia testudinaria MM08779 Hyphoraia aulica 96 100 AUNG10MOR ungemachi AVIL12SPA Arctia villica 100 75 KN00862 Arctia tigrina AVIKRUSK Arctia villica 82 100 AVIKRUSK Arctia villica AUNG10MOR Atlantarctia ungemachi 100 97 AVIL12SPA Arctia villica KN00862 Arctia tigrina 97

100 KN00875 Arctia thibetica AINT13TAJ Arctia intercalaris 100 AINT13TAJ Arctia intercalaris KN00875 Arctia thibetica 100 100 100 CNLEP81969 Arctia brachyptera ACAJ13RUS Arctia caja 100 100 CNLEP113664 Arctia opulenta KN00873 Arctia martinhoneyi 39 W15 Arctia caja W15 Arctia caja 59 26 91 12 KN00873 Arctia martinhoneyi CNLEP81969 Arctia brachyptera 100 89 ACAJ13RUS Arctia caja CNLEP113664 Arctia opulenta CNLEP78241 virginalis CNLEP78241 Platyprepia virginalis MM23400 Oroncus nr.alaica MM23400 Oroncus nr.alaica 99 97 KN00869 Orontobia secreta KN00865 tundrana 69 36 37 KN00860 seitzi CNLEP113676 100 86 90 KN00874 Arctia rueckbeili CNLEP113675 98 KN00863 Gonerda perornata MM23469 Pararctia lapponica 80 KN00867 souliei KN00869 Orontobia secreta 91 2177 51100 KN00872 Preparctia buddenbrocki KN00874 Arctia rueckbeili 26 78 KN00864 Sinoarctia sieversi KN00860 Acerbia seitzi 82 KN00871 Preparctia romanovi KN00867 Platarctia souliei 44 KN00870 Preparctia mirifica KN00863 Gonerda perornata 20 13 82 33 BMEN11RU2 Borearctia menetriesi KN00871 Preparctia romanovi 82

30 PMAT11RUS matronula KN00870 Preparctia mirifica 79 CNLEP113673 KN00872 Preparctia buddenbrocki 99 6 17 100 AFLA11RUS KN00864 Sinoarctia sieversi 15 AFLA14AUS Arctia flavia CNLEP113677 100

100 MM23468 Acerbia alpina MM23468 Acerbia alpina 27 CNLEP113677 Acerbia alpina CNLEP113673 Platarctia parthenos 67 26 68 CNLEP113676 Pararctia subnebulosa PMAT11RUS Pericallia matronula 34 100 KN00865 Pararctia tundrana BMEN11RU2 Borearctia menetriesi 30 96 CNLEP113675 Pararctia lapponica AFLA14AUS Arctia flavia 100 MM23469 Pararctia lapponica AFLA11RUS Arctia flavia

Figure S1a. CODON PARTITION TIGER PARTITION

CP03 70 Pronophila thelebe CP B01 Brintesia circe EW1 1 Pararge aegeria EW1 1 Pararge aegeria

22 CP03 63 Manerebia cyclopina CP07 89 Steremnia umbracina 56 CP07 89 Steremnia umbracina CP03 63 Manerebia cyclopina 27 CP B01 Brintesia circe EW24 7 Erebia oeme 79 24

81 EW4 5 Maniola jurtina EW4 5 Maniola jurtina 6 EW24 7 Erebia oeme NW108 3 Taygetis virgilia 91 26 90 NW108 3 Taygetis virgilia CP04 62 Eretris 8 CP04 62 Eretris CP03 70 Pronophila thelebe 42 CP01 33 Euptychia spn2 CP01 33 Euptychia spn2 27 34 100 CP19 10 Calisto nubila CP19 10 Calisto nubila 100 PR 1 3 Calisto nubila PR 1 3 Calisto nubila

100 DR003 Calisto pulchella RN02 14 Calisto archebates 35 33 94 DR015 Calisto pulchella CAL Sat102 Calisto raburni 52 56 RN02 12 Calisto zangis RN02 12 Calisto zangis 96 CAL Sat102 Calisto raburni DR003 Calisto pulchella 100 96 100 100 CP20 08 Calisto tasajera DR015 Calisto pulchella 93 CP20 07 Calisto tasajera CP20 07 Calisto tasajera 100 100 100 100 DR059 Calisto schwartzi CP20 08 Calisto tasajera DR063 Calisto schwartzi DR059 Calisto schwartzi 100 100 96 100 DR075 Calisto lyceius DR063 Calisto schwartzi 96 100 DR081 Calisto lyceius DR081 Calisto lyceius 100 100 CP19 05 Calisto crypta DR075 Calisto lyceius 100 98 CP20 01 Calisto crypta CP19 05 Calisto crypta 45 99 CP20 02 Calisto crypta CP20 01 Calisto crypta 81 47 99 76 CP20 03 Calisto crypta CP20 02 Calisto crypta 73 NW149 17 Calisto crypta CP20 03 Calisto crypta 73 RN02 14 Calisto archebates NW149 17 Calisto crypta DR019 Calisto debarriera DR019 Calisto debarriera 100 100 96 DR016 Calisto confusa DR016 Calisto confusa 99 23 DR032 Calisto confusa DR032 Calisto confusa RN03 02 Calisto batesi RN03 02 Calisto batesi 68 100 100 80 RN02 18 Calisto loxias RN02 18 Calisto loxias 54 42 100 CP20 11 Calisto hysius RN04 02 Calisto hysius 100 RN04 02 Calisto hysius CP20 11 Calisto hysius 38 100 100 94 RN06 02 Calisto grannus CP19 08 Calisto grannus 48 100 RN06 03 Calisto grannus NW149 15 Calisto grannus 100 CP19 11 Calisto sommeri CP19 11 Calisto sommeri 67 37 52 NW149 15 Calisto grannus RN06 03 Calisto grannus 91 100 100 CP19 08 Calisto grannus RN06 02 Calisto grannus RN06 04 Calisto obscura RN06 04 Calisto obscura 100 100 DR080 Calisto obscura DR080 Calisto obscura 50 64 NW150 2 Calisto obscura NW150 2 Calisto obscura 33 44 46 40 NW150 1 Calisto obscura NW150 1 Calisto obscura 82 75 91 NW149 12 Calisto obscura DR005 Calisto obscura 87 DR005 Calisto obscura NW149 12 Calisto obscura CP20 04 Calisto arcas CP20 04 Calisto arcas 100 100 70 NW149 16 Calisto arcas CP19 01 Calisto arcas 79 21 CP19 01 Calisto arcas NW149 16 Calisto arcas 53 RN02 16 Calisto clydoniata RN02 16 Calisto clydoniata 100 100 RN04 01 Calisto chrysaoros RN04 01 Calisto chrysaoros 100 100 RN02 17 Calisto galii RN06 01 Calisto clenchi 51 45 41 RN06 01 Calisto clenchi DR017 Calisto galii 41 69 DR017 Calisto galii RN02 17 Calisto galii 77 100 CP19 06 Calisto eleleus RN03 01 Calisto eleleus 100 RN03 01 Calisto eleleus CP19 06 Calisto eleleus

100 PM07 01 Calisto israeli PM07 02 Calisto israeli 100 PM07 02 Calisto israeli PM07 01 Calisto israeli 93 94 42 PM07 09 Calisto smintheus PM07 09 Calisto smintheus 100 100 PM07 05 Calisto smintheus PM07 05 Calisto smintheus 62 71 55 PM07 13 Calisto smintheus PM07 14 Calisto smintheus 38 59 PM07 14 Calisto smintheus PM07 13 Calisto smintheus 100 100 RN02 22 Calisto sibylla PM07 06 Calisto bradleyi 100 RN02 23 Calisto sibylla PM07 25 Calisto bradleyi 100 PM07 21 Calisto bruneri PM07 26 Calisto bradleyi 100 81 100 72 100 PM07 15 Calisto bruneri PM07 24 Calisto bradleyi 100 PM07 17 Calisto bruneri PM07 22 Calisto herophile 20 100 PM07 07 Calisto herophile PM07 16 Calisto bruneri 100 PM07 06 Calisto bradleyi PM20 06 Calisto herophile 100 15 PM07 25 Calisto bradleyi PM07 12 Calisto herophile 100 16 PM07 26 Calisto bradleyi PM15 06 Calisto herophile 75 36 32 66 PM07 24 Calisto bradleyi RN02 26 Calisto herophile 100 100 PM07 07 Calisto herophile RN02 25 Calisto herophile 100 PM07 22 Calisto herophile RN02 23 Calisto sibylla 100 27 PM20 06 Calisto herophile RN02 22 Calisto sibylla 25 46 PM07 12 Calisto herophile PM07 16 Calisto bruneri 100 16 PM15 06 Calisto herophile PM07 17 Calisto bruneri 100 43 33 100 RN02 25 Calisto herophile PM07 21 Calisto bruneri 99 RN02 26 Calisto herophile PM07 15 Calisto bruneri 29 PM20 05 Calisto brochei PM20 05 Calisto brochei 100 100 PM20 04 Calisto brochei PM20 04 Calisto brochei 63 57 PM07 03 Calisto brochei PM07 03 Calisto brochei 87 PM07 08 Calisto muripetens PM07 08 Calisto muripetens 90 100 100 97 RN01 04 Calisto muripetens RN01 04 Calisto muripetens 99 RN01 05 Calisto muripetens RN01 05 Calisto muripetens 69 64 88 PM07 04 Calisto occulta PM07 04 Calisto occulta 87

97 PM07 10 Calisto occulta PM07 10 Calisto occulta 97 PM07 23 Calisto occulta PM07 23 Calisto occulta 100 100 82 PM07 19 Calisto occulta PM07 19 Calisto occulta 83 PM07 18 Calisto occulta PM07 18 Calisto occulta

Figure S1b. Calisto CODON PARTITION TIGER PARTITION

MM05835 Zarcinia sp. MM05835 Zarcinia sp.

ANIC002281 Homadaula sp. ANIC002281 Homadaula sp.

ANIC002694 Imma loxoscia ANIC002694 Imma loxoscia

Brh Brenthia hexaselena Brh Brenthia hexaselena 100 100 Br sp TW 1 Brenthia sp. Br sp TW 1 Brenthia sp. 99 99 Br st LS 1 Brenthia stimulans Br st LS 1 Brenthia stimulans 100 100 100 100 Br pa TN 2 Brenthia pavonacella Br pa TN 2 Brenthia pavonacella 100 100 Br mon Brenthia monolychna Br mon Brenthia monolychna

An f BE 2 Anthophila fabriciana An a CA 2 Anthophila alpinella 100 100 An a CA 2 Anthophila alpinella An f BE 2 Anthophila fabriciana 100 100 100 MM11261 Asterivora homotypa MM11261 Asterivora homotypa 100

100 MM05852 Prochoreutis myllerana 100 100 PrinCT1HLC697 Prochoreutis inflatella 100 MM05852 Prochoreutis myllerana 98 PrinCT1HLC697 Prochoreutis inflatella 96 Te gn ST 1 Tebenna gnaphaliella Te gn ST 1 Tebenna gnaphaliella 100 100 Te ge WA 1 Tebenna gemmalis Te ge WA 1 Tebenna gemmalis

Sa div TW 1 Saptha divitiosa Sa div TW 1 Saptha divitiosa 100 100 Sa ber TW 1 Saptha beryllitis MM07573 Saptha libonota 100 100 100 100 MM07573 Saptha libonota Sa ber TW 1 Saptha beryllitis 75 65 Ch amm TW 1 amethystodes Ch amm TW 1 Choreutis amethystodes

Ch hy TW 2 Choreutis hyligenes Ch oph TW 2 Choreutis ophiosema 100 100 100 100 Ch oph TW 2 Choreutis ophiosema Ch hy TW 2 Choreutis hyligenes 41 36 Chp Choreutis pariana ChnemHR1 Choreutis nemorana 73 41 ChnemHR1 Choreutis nemorana Chp Choreutis pariana 37 21 88 86 100 Ch ba TW 2 Choreutis basalis Ch xa TW 1 Choreutis xantho 100

Ch xa TW 1 Choreutis xantho Ch ba TW 2 Choreutis basalis

To cup Tortyra cuprinella To cup Tortyra cuprinella 100 100 T spct LS 3 Tortyra spectabilis T spct LS 3 Tortyra spectabilis

En co LS 1 Alasea corniculata En co LS 1 Alasea corniculata 74 56 100 R gau LS 1 Rhobonda gaurisana R gau LS 1 Rhobonda gaurisana 100 88 88 He al PA Hemerophila albertiana He al PA Hemerophila albertiana 70 71 Hfel6649GQ857 Hemerophila felis Hfel6649GQ857 Hemerophila felis 100 100 H hou CaR 2 Hemerophila houttuinialis H di FL 4 Hemerophila diva 99 99 99 99 H di FL 4 Hemerophila diva H hou CaR 2 Hemerophila houttuinialis

Z sci LS 1 Zodia scintillana Z sci LS 1 Zodia scintillana

HfscLS1 5754 Hemerophila JR5 fusca HfscLS1 5754 Hemerophila JR5 fusca 65 100 100 64 H sil I Hemerophila sp. H lac LS 3 Hemerophila sp. 100 99

100 H lac LS 3 Hemerophila sp. H sil I Hemerophila sp. 100

Hexut6631 Hemerophila xutholopa Hexut6631 Hemerophila xutholopa 100 100 H imm LS 1 Hemerophila immarginata H imm LS 1 Hemerophila immarginata 95 90 H wgn LS 2 Hemerophila sp. H gr TP 1 Hemerophila gradella 100 100 H gr TP 1 Hemerophila gradella H wgn LS 2 Hemerophila sp. Figure S1c. CODON PARTITION TIGER PARTITION

100 NW106 10 Zethera incerta NW106 10 Zethera incerta 100 NW121 7 Ethope noirei NW121 7 Ethope noirei CP01 84 Haetera piera CP01 84 Haetera piera 76 51 NW66 6 Melanitis leda NW66 6 Melanitis leda 92 92 49 EW11 1 Manataria hercyna EW11 1 Manataria hercyna 63 100 CP13 01 Aeropetes tulbaghia CP13 01 Aeropetes tulbaghia 100 CP15 04 Dira clytus CP15 04 Dira clytus 62 NW98 5 Ypthima baldus NW108 3 Taygetis virgilia 41 NW108 3 Taygetis virgilia NW98 5 Ypthima baldus 65 CP03 63 Manerebia cyclopina CP B01 Brintesia circe 100 87 96 11 NW126 12 Pampasatyrus gyrtone EW20 12 Satyrus actaea 100 EW20 12 Satyrus actaea NW126 12 Pampasatyrus gyrtone 42 25 40 CP B01 Brintesia circe CP03 63 Manerebia cyclopina 6 100 CP09 66 Pedaliodes spn117 CP09 66 Pedaliodes spn117 99 31 CP03 70 Pronophila thelebe CP03 70 Pronophila thelebe 22 75 EW24 7 Erebia oeme EW24 7 Erebia oeme 69 67 CP10 07 Hyponephele cadusia EW4 5 Maniola jurtina 100 100 68 EW4 5 Maniola jurtina CP10 07 Hyponephele cadusia 83 EW1 1 Pararge aegeria EW1 1 Pararge aegeria 75 71 EW18 8 Mydosama terminus EW18 8 Mydosama terminus 68 EW25 23 Neope bremeri EW25 23 Neope bremeri CP16 14 Coelites euptychioides CP16 14 Coelites euptychioides 98 98 86 D30 Zipaetis saitis D30 Zipaetis saitis 93 40 84 EW25 17 Orsotriaena medus CP16 13 Erites argentina 88 45 CP16 13 Erites argentina EW25 17 Orsotriaena medus NW136 3 Argyronympha rubianensis NW136 2 Argyronympha ugiensis 56 100 NW136 2 Argyronympha ugiensis NW136 3 Argyronympha rubianensis 100 96 100 NW136 1 Argyronympha gracilipes NW136 7 Argyronympha danker 100 70 34 98 NW136 6 Argyronympha pulchra NW136 5 Argyronympha ulava 80 100 NW136 5 Argyronympha ulava NW136 1 Argyronympha gracilipes 100 NW136 7 Argyronympha danker NW136 6 Argyronympha pulchra 100 NW161 3 Erycinidia virgo CP07 71 Oressinoma typhla 100 NW161 2 Erycinidia gracilis NW161 17 Sinonympha amoena 78 100 UK1 20 Oreixenica latialis UK2 6 Coenonympha nolckeni 59 100 99 100 42 UK1 6 Oreixenica lathoniella CP16 22 Coenonympha myops CP07 71 Oressinoma typhla UK1 24 Coenonympha oedippus 72 37 74 59 CP16 22 Coenonympha myops CP16 21 Coenonympha phryne 98 UK2 6 Coenonympha nolckeni NW150 14 Coenonympha saadi 100 NW161 17 Sinonympha amoena EW5 18 Coenonympha glycerion 62 100 36 52 UK1 24 Coenonympha oedippus EW7 6 Coenonympha arcania 63 CP16 21 Coenonympha phryne UK2 20 Coenonympha vaucheri 94 95 91 NW150 14 Coenonympha saadi EW5 16 Coenonympha tullia 94 EW5 16 Coenonympha tullia EW7 3 Coenonympha pamphilus 100 95 100 93 100 EW7 3 Coenonympha pamphilus UK4 2 Coenonympha thyrsis 93 UK4 2 Coenonympha thyrsis RA61 Nesoxenica leprea 29 EW5 18 Coenonympha glycerion NW162 1 Paratisiphone lyrnessa 59 58 67 UK2 20 Coenonympha vaucheri RA456a helena 100 EW7 6 Coenonympha arcania UK1 15 Tisiphone abeona 54 NW162 1 Paratisiphone lyrnessa NW123 15 Dodonidia helmsii 100 100 UK1 15 Tisiphone abeona NW123 16 Erebiola butleri 100 RA456a Tisiphone helena NW123 17 Percnodaimon merula 84 56 9 37 RA61 Nesoxenica leprea NW123 18 Argyrophenga antipodium NW123 15 Dodonidia helmsii UK1 6 Oreixenica lathoniella 100 100 100 30 100 NW123 16 Erebiola butleri UK1 20 Oreixenica latialis 91 NW123 18 Argyrophenga antipodium NW161 2 Erycinidia gracilis 100 NW123 17 Percnodaimon merula NW161 3 Erycinidia virgo 13 24 NW124 24 Argynnina cyrila UK1 2 Geitoneura minyas 100 67 100 UK1 11 Heteronympha banksii RA64 Geitoneura klugii 48 UK1 8 Heteronympha NW124 24 Argynnina cyrila 100 63 40 EW10 4 Heteronympha merope UK1 11 Heteronympha banksii 100 100 UK1 2 Geitoneura minyas UK1 8 Heteronympha merope 100 46 RA64 Geitoneura klugii EW10 4 Heteronympha merope 26 100 NW161 4 Platypthima ornata NW161 4 Platypthima ornata 100 52 NW136 10 Platypthima homochroa NW136 11 Harsiesis hygea 74 93 NW136 11 Harsiesis hygea NW136 10 Platypthima homochroa 96 PNG 1 10 Lamprolenis nitida PNG 1 10 Lamprolenis nitida 97 98 100 KB339 Hypocysta adiante KB339 Hypocysta adiante 100 100 NW161 1 Altiapa klossi NW136 13 Altiapa decolor 100 NW136 13 Altiapa decolor NW161 1 Altiapa klossi Figure S1d. Coenonymphina CODON PARTITION TIGER PARTITION

NW149 1 Bombyx mori NW149 1 Bombyx mori 100 RWH 96 0877 Sematura lunus 05 srnp 19273 Coronidia orithea 100 05 srnp 19273 Coronidia orithea RWH 96 0877 Sematura lunus 84 MM07058 Axia margarita MM09158 Epicopeia mencia 100 10 MM00119 Drepana curvatula AYK 04 5215 Epicopeia hainesii 17 100 MM09158 Epicopeia mencia MM07058 Axia margarita 81 10 AYK 04 5215 Epicopeia hainesii MM00119 Drepana curvatula 13 100 MM00210 Epiplema inconspicua MM00210 Epiplema inconspicua 100 100 MM07630 Phazaca mutans MM07632 Lobogethes interrupta 100 51 71 MM07632 Lobogethes interrupta MM07630 Phazaca mutans 100 MM09897 Acropteris sp. MM09897 Acropteris sp. 100 99 MM09171 Urapteroides astheniata MM09171 Urapteroides astheniata 100 98 NW96 7 leilus MM09173 Chrysiridia ripheus 98 MM09173 Chrysiridia ripheus NW96 7 Urania leilus gb ID 17186 Ergavia roseivena gb ID 17186 Ergavia roseivena 46 MM08391 Timandra griseata MM00032 Cyclophora punctaria 100 69 100 MM00032 Cyclophora punctaria MM08391 Timandra griseata 49 46 96 MM08784 Lythria cruentaria MM08784 Lythria cruentaria 100 64 MM00216 Afrophyla vethi MM00184 Rhodometra sacraria 68 36 65 28 49 MM00184 Rhodometra sacraria MM00216 Afrophyla vethi 58 MM00220 Lissoblemma hamularia MM00220 Lissoblemma hamularia 45 72 MM00586 Scopula immorata MM00586 Scopula immorata 78 78 82 NS02 Idaea straminata NS02 Idaea straminata 79 gb ID 16954 Smicropus ochra gb ID 16954 Smicropus ochra 79 64 MM06697 Rhodostrophia vibicaria AH7746 Atyria chibcha 61 AH7746 Atyria chibcha MM06697 Rhodostrophia vibicaria 100 MM00237 Paradetis porphyrias gb ID 15491 Dyspteris sp. 98 gb ID 15491 Dyspteris sp. MM00237 Paradetis porphyrias MM01467 Aplocera praeformata MM01467 Aplocera praeformata 98 61 59 100 MM00240 Tatosoma lestevata MM00240 Tatosoma lestevata 100 98 MM04633 Trichopteryx carpinata MM04633 Trichopteryx carpinata 100 100 100 gb CR S 1708 Psaliodes planiplaga MM00239 Poecilasthena pulchraria 100 100 MM06788 Philereme vetulata MM06106 Asthena albulata 66 100 MM08780 Rheumaptera cervinalis MM14743 Eois ciocolatina 100 92 100 MM00239 Poecilasthena pulchraria gb ID 17158 Eois basaliata 65 MM06106 Asthena albulata gb CR S 1708 Psaliodes planiplaga 32 100 MM14743 Eois ciocolatina MM06788 Philereme vetulata 100 92 30 23 gb ID 17158 Eois basaliata MM08780 Rheumaptera cervinalis 22 47 MM01453 Perizoma alchemillata MM03177 Operophtera brumata 31 44 AH7410 Melanthia procellata AH7410 Melanthia procellata 34 MM14746 Pomasia sp. 100 MM01453 Perizoma alchemillata 45 MM01802 Eupithecia denotata MM14746 Pomasia sp. 100 13 92 43 100 MM01827 Pasiphila rectangulata MM01802 Eupithecia denotata 90 100 MM00243 Pasiphila near melochlora MM01827 Pasiphila rectangulata 100 MM00244 Pasiphila sandycias MM00244 Pasiphila sandycias 100 43 13 MM10470 Baptria tibiale MM00243 Pasiphila near melochlora 40 MM03177 Operophtera brumata MM10470 Baptria tibiale 8 21 MM06700 Anticollix sparsatus MM06700 Anticollix sparsatus 61 MM06843 Cidaria fulvata MM06843 Cidaria fulvata 57 67 100 MM01465 Euphyia unangulata MM01465 Euphyia unangulata 100 55 100 MM00238 Helastia cinerearia MM00238 Helastia cinerearia 100 42 MM01285 Xanthorhoe montanata MM01285 Xanthorhoe montanata 63 MM02399 Larentia clavaria MM02399 Larentia clavaria 99 100 MM00642 Hydriomena impluviata MM00642 Hydriomena impluviata 100 42 gb ID 17164 Hagnagora mortipax gb ID 17164 Hagnagora mortipax 56 100 64 AH7143 Heterusia species AH7143 Heterusia species 62 67 gb ID 0081 Callipia constantinaria gb ID 0081 Callipia constantinaria 91 gb CR S 1239 Trocherateina cachara gb CR S 1239 Trocherateina cachara NW107 1 Archiearis parthenias NW107 1 Archiearis parthenias 98 MM00224 Conolophia near conscitaria MJM 96 0267 Nearcha sp. 99 61 AH7160 Dolichoneura oxypteraria MM00224 Conolophia near conscitaria 51 MJM 96 0267 Nearcha sp. AH7160 Dolichoneura oxypteraria 98 100 MM07509 Epidesmia chilonaria MM00246 Adeixis griseata 99 98 MM00246 Adeixis griseata MM07509 Epidesmia chilonaria MM07576 Oenochroma orthodesma MM07576 Oenochroma orthodesma 30 MM00211 Conchyliodes distelitis MM13433 Eumelea ludovicata 88 23 78 MM01146 Geometra papilionaria MM00211 Conchyliodes distelitis 68 99 MM13435 Timandromorpha discolor AH3 Petovia marginata 31 MM13434 Aracima serrata gb ID 17778 Oospila holochroa 93 19 79 98 96 MM00223 Argyrorapha moderata MM13438 Thalassodes quadraria 19 98 MM14710 Comibaena bajularia MM13439 Hierochthonia semitaria 33 99 98 MM14751 Comibaena attenuata MM06428 Jodis putata 28 69 gb ID 17183 Pyrochlora rhanis AH2 Antharmostes papilio 76 37 81 100 AH3854 Synchlora gerularia AH7829 Comostola leucomerata 98 78 100 gb ID 17689 Nemoria nigrisquama AH3830 Hemistola chrysoprasaria 43 53 AH7057 Nemoria near erina AH3607 Microloxia ruficornis 95 36 MM14745 Agathia sp. gb ID 17715 Chloropteryx opalaria 61 57 MM14748 Dysphania malayanus MM11574 Thalera fimbrialis 57 50 MM07510 Crypsiphona ocultaria MM10876 Hemithea aestivaria 35 AH7532 Pseudoterpna coronillaria MM14745 Agathia sp. AH3 Petovia marginata MM14748 Dysphania malayanus 42 29 MM13438 Thalassodes quadraria AH7532 Pseudoterpna coronillaria 44 78 24 28 MM13439 Hierochthonia semitaria MM07510 Crypsiphona ocultaria gb ID 17778 Oospila holochroa MM01146 Geometra papilionaria 94 17 71 45 85 15 AH2 Antharmostes papilio MM13434 Aracima serrata 99 MM06428 Jodis putata MM13435 Timandromorpha discolor 14 90 96 AH3830 Hemistola chrysoprasaria MM00223 Argyrorapha moderata 93 24 AH7829 Comostola leucomerata MM14751 Comibaena attenuata 96 90 95 AH3607 Microloxia ruficornis MM14710 Comibaena bajularia 63 gb ID 17715 Chloropteryx opalaria gb ID 17183 Pyrochlora rhanis 79 63 MM11574 Thalera fimbrialis AH3854 Synchlora gerularia 100 MM10876 Hemithea aestivaria AH7057 Nemoria near erina 100 28 MM13433 Eumelea ludovicata gb ID 17689 Nemoria nigrisquama 48 gb ID 17152 Phrygionis flavilimes MM13445 Plutodes costatus 56 MM13445 Plutodes costatus gb ID 17152 Phrygionis flavilimes 8 MM14763 Thinopteryx crocoptera AH3862 Sphacelodes vulneraria 64 gb ID 17426 Aragua bistonaria MM13447 Naxa textilis 47 97 MM06693 Campaea margaritaria MM01307 Cabera exanthemata MM00148 Alsophila aescularia AH3604 Zamarada torrida 85 90 41 8 96 MM02692 Colotois pennaria MM01247 Lomaspilis marginata 67 21 MM14762 Wilemania nitobei MM00584 Chiasmia clathrata 37 36 48 MM00227 Onychora agaritharia gb CR S 1187 Ballantiophora gibbiferata 26 100 MM00235 Declana floccosa MM14752 Luxiaria phyllosaria 38 96 100 MM00233 Declana leptomera MM06725 Abraxas grossulariata MM00234 Declana egregia MM01298 Cleora cinctaria AH3852 Melanolophia species 27 65 1 38 MM09159 Psilocladia diaereta 25 MM06601 Angerona prunaria MM08584 Bupalus piniaria 70 2 MM12840 Charissa obscurata MM13441 Phaselia deliciosaria 42 28 25 12 79 gb ID 15754 Acrotomodes kunoi MM01469 Hypomecis roboraria 16 gb ID 17449 Pyrinia abditaria MM05118 Biston betularia 95 100 MM01485 Odontopera bidentata MM14738 Erannis defoliaria 100 MM14763 Thinopteryx crocoptera 1 AH3861 Pero near infantilis 12 gb ID 16800 Pero gamuza MM07846 Lomographa bimaculata 100 77 MM01349 Opisthograptis luteolata NS10 Theria rupicapraria MM00376 Epirranthis diversata MM00226 Drepanogynis tripartita 83 54 MM06863 Ourapteryx sambucaria MM05496 Ithysia pravata 94 23 51 MM07823 Ennomos alniaria MM06720 Apeira syringaria 73 40 100 gb ID 17185 Fulgurodes mayor MM01497 repandaria 9 AH7126 Nephodia near MM06431 Plagodis pulveraria 95 25 gb ID 17448 Phyllodonta succedens MM00213 Psilocladia obliquata 29 34 gb ID 17486 Cratoptera vestianaria MM00215 Larentioides cacothemon 37 57 gb ID 15008 Sabulodes thermidora AH7548 Pachycnemia hippocastanaria 20 1 99 gb ID 17153 Microxydia sp. MM05983 Petrophora chlorosata 30 39 gb ID 15007 Pantherodes conglomerata MM14756 Curbia martiata 27 12 98 gb ID 17668 Herbita zarina MM00242 Ischalis variabilis 100 77 98 gb ID 17733 Cimicodes ferruginea MM00241 Ischalis fortinata gb ID 17246 Sericoptera mahometaria MM00214 Argyrophora trofonia 34 MM00214 Argyrophora trofonia MM00231 Mictodoca toxeuta 63 57 MM11250 Capusa senilis MM11250 Capusa senilis 68 41 MM00231 Mictodoca toxeuta MM00245 Amelora sparsularia 78 53 61 MM00245 Amelora sparsularia MM11251 Archephanes zalosema 97 70 94 MM11251 Archephanes zalosema MM11248 Niceteria macrocosma 100 100 MM07605 Thalaina angulosa MM07605 Thalaina angulosa MM11248 Niceteria macrocosma MM00227 Onychora agaritharia 65 4 MM00213 Psilocladia obliquata MM00235 Declana floccosa 100 25 MM00215 Larentioides cacothemon MM00234 Declana egregia 100 19 16 15 AH7548 Pachycnemia hippocastanaria MM00233 Declana leptomera 18 MM05983 Petrophora chlorosata MM06693 Campaea margaritaria 99 2 22 MM14756 Curbia martiata MM00148 Alsophila aescularia 82 100 MM00242 Ischalis variabilis MM02692 Colotois pennaria 96 MM00241 Ischalis fortinata MM14762 Wilemania nitobei MM00226 Drepanogynis tripartita 82 MM12840 Charissa obscurata 34 30 5 94 MM05496 Ithysia pravata MM06601 Angerona prunaria 69 MM06720 Apeira syringaria MM09159 Psilocladia diaereta 7 39 MM01497 Epione repandaria gb ID 15754 Acrotomodes kunoi 80 6 MM06431 Plagodis pulveraria gb ID 17449 Pyrinia abditaria 24 100 NS10 Theria rupicapraria gb ID 17426 Aragua bistonaria 46 MM07846 Lomographa bimaculata MM01485 Odontopera bidentata 100 43 AH3862 Sphacelodes vulneraria gb ID 16800 Pero gamuza 100 13 8 30 MM01307 Cabera exanthemata AH3861 Pero near infantilis MM13447 Naxa textilis MM01349 Opisthograptis luteolata 71 85 MM01247 Lomaspilis marginata MM00376 Epirranthis diversata 25 60 AH3604 Zamarada torrida MM06863 Ourapteryx sambucaria 63 58 30 38 MM00584 Chiasmia clathrata MM07823 Ennomos alniaria 28 gb CR S 1187 Ballantiophora gibbiferata AH7126 Nephodia near panacea 100 98 38 MM14752 Luxiaria phyllosaria gb ID 17185 Fulgurodes mayor 97 MM06725 Abraxas grossulariata gb ID 17448 Phyllodonta succedens 20 MM01298 Cleora cinctaria gb ID 17486 Cratoptera vestianaria 24 63 MM08584 Bupalus piniaria gb ID 15008 Sabulodes thermidora 68 56 94 MM05118 Biston betularia gb ID 17153 Microxydia sp. 100 21 MM14738 Erannis defoliaria gb ID 15007 Pantherodes conglomerata 30 30 MM01469 Hypomecis roboraria gb ID 17668 Herbita zarina 98 31 MM13441 Phaselia deliciosaria gb ID 17733 Cimicodes ferruginea 99 AH3852 Melanolophia species gb ID 17246 Sericoptera mahometaria

Figure S1e. Geometridae CODON PARTITION TIGER PARTITION

NW109 12 Antirrhea philoctetes NW109 12 Antirrhea philoctetes

CP09 56 Caerois chorinaeus CP09 56 Caerois chorinaeus

NW110 17 Morpho marcus NW110 17 Morpho marcus 100 100 PM14 35 Morpho eugenia NW134 7 Morpho eugenia 100 100

NW134 7 Morpho eugenia PM14 35 Morpho eugenia

NW110 7 Morpho anaxibia NW110 7 Morpho anaxibia 100 100 NW110 13 Morpho rhetenor NW110 13 Morpho rhetenor 100 100

100 NW134 8 Morpho cypris NW134 8 Morpho cypris 100 89 80 CP07 01 Morpho amphitryon NW110 12 Morpho hecuba 100 100

NW126 1 Morpho hercules NW126 22 Morpho cisseis 100 100

NW126 22 Morpho cisseis NW126 1 Morpho hercules 100 100

NW110 12 Morpho hecuba CP07 01 Morpho amphitryon

100 100 NW162 9 Morpho polyphemus NW110 18 Morpho polyphemus 100 100

NW110 18 Morpho polyphemus NW162 9 Morpho polyphemus

NW100 2 Morpho epistrophus NW110 16 Morpho deidamia 100 100

NW110 16 Morpho deidamia NW100 2 Morpho epistrophus 100 100 100 NW118 10 Morpho granadensis NW118 10 Morpho granadensis 99

100 100 NW127 12 Morpho helenor NW127 12 Morpho helenor 44 100 NW66 5 Morpho helenor NW66 5 Morpho helenor 100 73 NW134 5 Morpho achilles NW103 6 Morpho helenor 100 99 85 81 NW103 6 Morpho helenor NW134 5 Morpho achilles

NW109 13 Morpho amathonte NW109 13 Morpho amathonte 100 100 NW110 9 Morpho menelaus NW110 11 Morpho menelaus 100 100

NW110 11 Morpho menelaus NW110 9 Morpho menelaus

100 NW100 3 Morpho aega CP07 04 Morpho sulkowskyi 99 98 100 NW110 15 Morpho portis NW134 2 Morpho sulkowskyi 100

100 CP04 86 Morpho aurora NW116 1 Morpho sulkowskyi 100 100

CP03 82 Morpho aurora NW110 15 Morpho portis 98 37 CP07 04 Morpho sulkowskyi NW100 3 Morpho aega 45 100 NW134 2 Morpho sulkowskyi CP04 86 Morpho aurora 100 100

NW116 1 Morpho sulkowskyi CP03 82 Morpho aurora Figure S1f. Morpho CODON PARTITION TIGER PARTITION

MM09888 Thaumetopoea solitaria MM09888 Thaumetopoea solitaria MM00998 Notodonta dromedarius MM00998 Notodonta dromedarius 98 MM00160 Eutelia adulatrix RZ120 Lophoptera squammigera 100 100 RZ35 Targalla silvicola RZ541 Stictoptera columba 100 100 RZ541 Stictoptera columba RZ35 Targalla silvicola 94 RZ120 Lophoptera squammigera MM00160 Eutelia adulatrix 89 RZ97 Eligma narcissus RZ469 Neostictoptera nigropuncta 100 99 MM00107 Pseudoips prasinanus RZ634 Collomena siopera 98 100 RZ634 Collomena siopera RZ97 Eligma narcissus 93 77 RZ469 Neostictoptera nigropuncta MM00107 Pseudoips prasinanus 85 100 89 MM04358 Catocala sponsa MM01048 Lymantria monacha 82 100 100 MM00963 Calyptra thalictri MM03713 Arctia caja 100 94 MM03713 Arctia caja MM04358 Catocala sponsa 77 MM01048 Lymantria monacha MM00963 Calyptra thalictri 100 MM00152 Acontia lucida MM09893 Emmelia trabealis 100 MM09893 Emmelia trabealis MM00152 Acontia lucida RZ50 Amyna octo RZ50 Amyna octo 82 86 82 52 RZ395 Dyrzela plagiata RZ395 Dyrzela plagiata 100 100 RZ382 Ramadasa pavo RZ382 Ramadasa pavo 85 78 81 MM09894 Xanthodes albago MM09894 Xanthodes albago 99 99 RZ351 Encruphion leena RZ474 Concana lecta 70 98 RZ595 Vespola caeruleifera RZ472 Diopa corone 63 98 100 RZ464 Parangitia mosaica RZ482 Concana permixta 73 94 90 RZ463 Parangitia temperata RZ621 Concana mundissima 100 RZ472 Diopa corone RZ351 Encruphion leena 63 99 100 RZ474 Concana lecta RZ595 Vespola caeruleifera 62 91 RZ482 Concana permixta RZ464 Parangitia mosaica 100 RZ621 Concana mundissima RZ463 Parangitia temperata 100 RZ10 Dyops chromatophila RZ10 Dyops chromatophila 96 96 100 RZ147 Pseudoarcte melanis RZ548 Pararcte schneideriana 100 45 RZ548 Pararcte schneideriana RZ54 Arcte modesta 59 88 89 RZ54 Arcte modesta RZ147 Pseudoarcte melanis 100 RZ281 Sosxetra grata RZ281 Sosxetra grata 100 20 90 RZ552 Ceroctena amynta RZ552 Ceroctena amynta 85 RZ636 Cyclodes omma RZ636 Cyclodes omma 78 74 100 RZ384 Belciana biformis RZ416 Belciana kala 100 16 RZ416 Belciana kala RZ384 Belciana biformis MM04601 Deltote uncula MM04543 Cucullia umbratica 24 19 31 19 MM04543 Cucullia umbratica MM04601 Deltote uncula 25 44 CWM 94 0372 Raphia abrupta or sp MM09267 Diloba caeruleocephala 46 32 MM09267 Diloba caeruleocephala CWM 94 0372 Raphia abrupta or sp 30 100 MM00328 Autographa gamma MM05132 Abrostola tripartita 100 23 MM05132 Abrostola tripartita MM00328 Autographa gamma 27 RZ87 Eucocytia meeki RZ87 Eucocytia meeki 100 100 91 RZ388 Antitrisuloides catocalina RZ388 Antitrisuloides catocalina 94 RZ459 Thiacidas sp RZ459 Thiacidas sp 100 100 28 31 MM04583 Panthea coenobita MM04583 Panthea coenobita RZ659 Cydosia sp MM01162 Amphipyra perflua 100 100 41 RZ596 Flammona quadrifasciata MM01542 Brachionycha nubeculosa MM00005 Panemeria tenebrata RZ659 Cydosia sp 100 45 100 RZ620 Polygrammate hebraeicum RZ596 Flammona quadrifasciata 44 RZ618 Comachara cadburyi MM00005 Panemeria tenebrata 98 44 100 100 RZ597 Acronicta americana RZ597 Acronicta americana 100 86 RZ616 Acronicta fallax MM01529 Acronicta rumicis 84 40 MM01529 Acronicta rumicis RZ616 Acronicta fallax 100 MM06745 Craniophora ligustri MM06745 Craniophora ligustri 23 46 96 39 90 RZ619 Harrisimemna trisignata RZ619 Harrisimemna trisignata 95 RZ617 Cerma cerintha RZ617 Cerma cerintha 30 100 MM01542 Brachionycha nubeculosa RZ618 Comachara cadburyi 100 MM01162 Amphipyra perflua RZ620 Polygrammate hebraeicum 48 MM07669 Periscepta polysticta MM07669 Periscepta polysticta RZ277 Aedia leucomelas RZ277 Aedia leucomelas 59 75 53 67 88 RZ511 Condica illecta RZ341 Hemicephalis alesa 88 RZ341 Hemicephalis alesa 98 RZ511 Condica illecta 94 MM05114 Pyrrhia umbra MM05114 Pyrrhia umbra 100 RZ25 Ecpatia longinqua RZ545 Ecpatia sp 100 99 99 RZ545 Ecpatia sp RZ25 Ecpatia longinqua RZ658 Cromobergia teichii RZ517 Chytonix diehli 95 75 3797 99 RZ523 Stenoloba futii RZ658 Cromobergia teichii 75 61 MM04919 Cryphia raptricula MM04919 Cryphia raptricula 100 56 RZ517 Chytonix diehli RZ523 Stenoloba futii 48 RZ14 Tiracola aureata RZ14 Tiracola aureata 10057 MM05153 Actinotia polyodon MM05153 Actinotia polyodon 47 100 MM01651 Hoplodrina octogenaria MM01651 Hoplodrina octogenaria 54 58 100 MM01170 Apamea crenata MM04752 Noctua fimbriata 31 23 RR 98 0914 Ufeus faunus MF 05 0053 Diaphone sp 26 22 MF 05 0053 Diaphone sp MM01170 Apamea crenata 100 MM04752 Noctua fimbriata RR 98 0914 Ufeus faunus Figure S1g. Noctuidae CODON PARTITION TIGER PARTITION

100 PM03 14 Curetis barsine NW70 6 Heliconius hecale 81 100 MM04799 Favonius quercus NW106 3 Biblis hyperia 100 100 EW28 1 Celastrina neglecta NW62 2 Nymphalis polychloros 100 100 06 srnp 33176 Euselasia chrysi NW71 1 Libythea celtis 91 100 NW84 13 Hamearis lucina NW108 21 Danaus plexippus 82 100 05 srnp 48598 Mesosemia lamach CP B01 Brintesia circe 100 NW85 9 Amarynthis meneria NW78 3 Charaxes castor 91 NW70 6 Heliconius hecale PM03 14 Curetis barsine 100 100 NW62 2 Nymphalis polychloros MM04799 Favonius quercus 100 100 NW106 3 Biblis hyperia EW28 1 Celastrina neglecta 100 93 NW71 1 Libythea celtis NW85 9 Amarynthis meneria 100 76 NW108 21 Danaus plexippus 05 srnp 48598 Mesosemia lamach 100 100 NW78 3 Charaxes castor 06 srnp 33176 Euselasia chrysi 100 CP B01 Brintesia circe NW84 13 Hamearis lucina 100 RV 07 Z083 Leptidea morsei RV 07 Z083 Leptidea morsei 100 NW149 5 Leptidea sinapis NW149 5 Leptidea sinapis 100 100 MFB 00 P312 Pseudopieris nehem MFB 00 P312 Pseudopieris nehem 100 100 MFB 00 P403 Moschoneura pintho MFB 00 P403 Moschoneura pintho 100 92 MFB 00 P353 Patia orize MFB 00 P353 Patia orize 93 100 90 MFB 00 P405 Enantia lina MFB 00 P405 Enantia lina 84 55 MFB 00 P234 Lieinix MFB 00 P234 Lieinix nemesis 79 96 NW153 23 Dismorphia spio NW153 23 Dismorphia spio 99 MFB 00 P231 Dismorphia zathoe MFB 00 P231 Dismorphia zathoe SC 01 T380 Pseudopontia parado SC 01 T380 Pseudopontia parado 100 100 87 DC 98 U711 Nathalis iole DC 98 U711 Nathalis iole 90 MFB 00 P215 Kricogonia lyside MFB 00 P215 Kricogonia lyside 94 93 MFB 00 P211 Pyrisitia proterpi MFB 00 P211 Pyrisitia proterpi 100 100 67 MFB 00 P419 Teriocolias zelia MFB 00 P419 Teriocolias zelia 52 100 PDV 94 B004 Leucidia brephos PDV 94 B004 Leucidia brephos 100 100 100 DW 92 Z084 Eurema mexicana DW 92 Z084 Eurema mexicana 100 100 MFB 00 P036 Eurema hecabe MFB 00 P036 Eurema hecabe MFB 00 R059 Gandaca harina MFB 00 R059 Gandaca harina 80 63 99 65 RE 07 G166 Gonepteryx cleopatr RE 07 G166 Gonepteryx cleopatr 68 98 MFB 00 P475 Dercas gobrias MFB 00 P475 Dercas gobrias 88 100 MFB 00 P199 Aphrissa statira MFB 00 P197 Phoebis sennae 100 82 MFB 00 P197 Phoebis sennae MFB 00 P199 Aphrissa statira 70 75 56 MFB 00 P188 Anteos clorinde MFB 00 P059 Catopsilia pomona 47 94 MFB 00 P059 Catopsilia pomona MFB 00 P188 Anteos clorinde 95 MFB 00 P204 Zerene cesonia MFB 00 P204 Zerene cesonia 100 100 MM03233 Colias palaeno AC8 10 Colias erate 100 100 AC8 10 Colias erate MM03233 Colias palaeno 75 35 90 75 99 NP 98 U268 Colias philodice NP 98 U268 Colias philodice 99 FS.b 543 Colias eurytheme FS.b 543 Colias eurytheme

72 CLT OB 003 Teracolus CLT OB 003 Teracolus eris 47 88 GA 93 Z024 Gideona lucasi GA 93 Z024 Gideona lucasi 89 85 GA 93 Z028 Pinacopteryx eriphi GA 93 Z028 Pinacopteryx eriphi 60 100 SC 01 T424 Eronia DL 00 Q581 Ixias pyrene 100 63 DL 00 Q581 Ixias pyrene SC 01 T424 Eronia cleodora 64 BC TB3538 Colotis evenina BC TB3538 Colotis evenina 100 100 NFMP5 Colotis danae NFMP5 Colotis danae 42 68 99 SC 01 T434 Colotis hetaera SC 01 T434 Colotis hetaera 99 NFMP1 Colotis protomedia NFMP1 Colotis protomedia NP 95 Y258 Hebomoia glaucippe NP 95 Y258 Hebomoia glaucippe 90 92 MFB 00 P437 Eroessa chiliensis MFB 00 P437 Eroessa chiliensis 66 100 100 75 100 MFB 00 P398 Cunizza hirlanda MFB 00 P398 Cunizza hirlanda 100 68 MFB 00 P428 Mathania MFB 00 P268 Hesperocharis croc 75 100 100 MFB 00 P268 Hesperocharis croc MFB 00 P428 Mathania leucothea NW107 2 Elphinstonia charlonia NW107 2 Elphinstonia charlonia 100 97 NW151 2 Anthocharis cardamine NW151 2 Anthocharis cardamine 98 100 44 NW151 1 Anthocharis belia NW151 1 Anthocharis belia 35 24 14 80 RV 08 H240 Zegris RV 08 H240 Zegris eupheme 68 AF 94 A022 Euchloe ausonides AF 94 A022 Euchloe ausonides 100 MFB 00 P442 Pareronia valeria MFB 00 P442 Pareronia valeria 99 SC 01 T403 Nepheronia thalassi SC 01 T403 Nepheronia thalassi 36 NP 95 Y248 Leptosia nina MFB 00 P133 Elodina angulipenn 42 MFB 00 P133 Elodina angulipenn NP 95 Y248 Leptosia nina 14 100 NP 95 Y239 Saletara liberia MFB 00 P159 Appias paulina 95 19 98 MFB 00 P159 Appias paulina NP 95 Y239 Saletara liberia 100 76 MFB 00 P469 Aoa affinis MFB 00 P469 Aoa affinis 82 98 MFB 00 P491 Appias aegis MFB 00 P491 Appias aegis 96 52 MFB 00 P195 Appias drusilla MFB 00 P195 Appias drusilla 48 98 MFB 00 P467 Talbotia naganum MFB 00 P201 Ganyra josephina 100 100 MM06585 Pieris rapae MFB 00 P170 Ascia monuste FS.b 943 Pieris napi MFB 00 P306 Tatochila autodice 59 66 100 99 MFB 00 P492 Baltia butleri MFB 00 P449 Theochila maenacte 100 100 100 NP 99 T476 Pontia MFB 00 P432 Hypsochila wagenkn 68 100 MFB 00 P410 Pierphulia rosea AF 94 A003 Pontia callidice 97 71 MFB 00 P189 Leptophobia aripa MFB 00 P416 Infraphulia ilyode 99 100 99 MFB 00 P375 Phulia nymphula 100 MFB 00 P221 Pieriballia viardi 99 MFB 00 P202 Perrhybris pamela MFB 00 P189 Leptophobia aripa 42 99 MFB 00 P277 Itaballia demophil MFB 00 P221 Pieriballia viardi 100 MFB 00 P201 Ganyra josephina MFB 00 P202 Perrhybris pamela 100 100 MFB 00 P170 Ascia monuste MFB 00 P277 Itaballia demophil 100 88 72 52 MFB 00 P306 Tatochila autodice MFB 00 P492 Baltia butleri 97 100 72 100 MFB 00 P449 Theochila maenacte AF 94 A003 Pontia callidice MFB 00 P432 Hypsochila wagenkn NP 99 T476 Pontia helice 55 77 MFB 00 P410 Pierphulia rosea MFB 00 P467 Talbotia naganum 96 97 99 MFB 00 P416 Infraphulia ilyode MM06585 Pieris rapae 100 MFB 00 P375 Phulia nymphula FS.b 943 Pieris napi 95 SC 01 T400 Dixeia charina DL 00 Q546 Belenois java 89 DL 00 Q546 Belenois java SC 01 T400 Dixeia charina 99 52 DL 00 Q610 Prioneris philonome MFB 00 P131 Cepora perimale 61 97 MFB 00 P131 Cepora perimale DL 00 Q610 Prioneris philonome NP 99 T486 Mylothris agathina SC 01 M002 Mylothris bernice 100 97 100 95 SC 01 M002 Mylothris bernice NP 99 T486 Mylothris agathina 100 DL 01 N104 Delias belladonna MFB 97 U344 Delias 100 100 100 100 MFB 97 U344 Delias aganippe DL 01 N104 Delias belladonna 100 100 MFB 00 P468 Leuciacria acuta MFB 00 R067 Leuciacria olivei 100 84 MFB 00 R067 Leuciacria olivei MFB 00 P468 Leuciacria acuta 94 100 MFB 00 P481 Aporia agathon MFB 00 P481 Aporia agathon 100 NW149 4 Aporia crataegi NW149 4 Aporia crataegi 72 65 MFB 00 P316 lycimnia MFB 00 P316 Melete lycimnia 100 100 MFB 00 P265 Leodonta tellane MFB 00 P265 Leodonta tellane 100 100 MFB 00 P283 Pereute charops MFB 00 P283 Pereute charops 96 97 84 NGK 02 C419 Neophasia menapia MFB 00 P284 Eucheira socialis 85 100 MFB 00 P284 Eucheira socialis NGK 02 C419 Neophasia menapia 100 78 MFB 00 P266 Catasticta cerberu MFB 00 P266 Catasticta cerberu 67 66 MFB 00 P247 Catasticta teutila MFB 00 P247 Catasticta teutila 79 62 MFB 00 P395 Charonias eurytele MFB 00 P263 Archonias brassoli 71 MFB 00 P263 Archonias brassoli MFB 00 P395 Charonias eurytele

Figure S1h. Pieridae