<I>Pyura Praeputialis</I>
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Pyura Doppelgangera to Support Regional Response Decisions
REPORT NO. 2480 BACKGROUND INFORMATION ON THE SEA SQUIRT PYURA DOPPELGANGERA TO SUPPORT REGIONAL RESPONSE DECISIONS CAWTHRON INSTITUTE | REPORT NO. 2480 JUNE 2014 BACKGROUND INFORMATION ON THE SEA SQUIRT PYURA DOPPELGANGERA TO SUPPORT REGIONAL RESPONSE DECISIONS LAUREN FLETCHER Prepared for Marlborough District Council CAWTHRON INSTITUTE 98 Halifax Street East, Nelson 7010 | Private Bag 2, Nelson 7042 | New Zealand Ph. +64 3 548 2319 | Fax. +64 3 546 9464 www.cawthron.org.nz REVIEWED BY: APPROVED FOR RELEASE BY: Javier Atalah Chris Cornelisen ISSUE DATE: 3 June 2014 RECOMMENDED CITATION: Fletcher LM 2014. Background information on the sea squirt, Pyura doppelgangera to support regional response decisions. Prepared for Marlborough District Council. Cawthron Report No. 2480. 30 p. © COPYRIGHT: Cawthron Institute. This publication may be reproduced in whole or in part without further permission of the Cawthron Institute, provided that the author and Cawthron Institute are properly acknowledged. CAWTHRON INSTITUTE | REPORT NO. 2480 JUNE 2014 EXECUTIVE SUMMARY The non-indigenous solitary sea squirt, Pyura doppelgangera (herein Pyura), was first detected in New Zealand in 2007 after a large population was found in the very north of the North Island. A delimitation survey by the Ministry for Primary Industries (MPI) during October 2009 found established populations at 21 locations within the region. It is not known how long Pyura has been present in New Zealand, although it is not believed to be a recent introduction. Pyura is an aggressive interspecific competitor for primary space. As such, this species may negatively impact native green-lipped mussel beds present, with associated impacts to key social and cultural values. -
Mitochondrial Genetic Code in Tunicates
bioRxiv preprint doi: https://doi.org/10.1101/865725; this version posted December 5, 2019. The copyright holder has placed this preprint (which was not certified by peer review) in the Public Domain. It is no longer restricted by copyright. Anyone can legally share, reuse, remix, or adapt this material for any purpose without crediting the original authors. Widespread use of the \ascidian" mitochondrial genetic code in tunicates Julien Pichon1,2, Nicholas M. Luscombe1,3,4, Charles Plessy1,* December 5, 2019 1. Okinawa Institute of Science and Technology Graduate University 1919-1 Tancha, Onna-son, Kunigami-gun Okinawa, 904-0495, Japan 2. Uni- versit´ede Paris 3. The Francis Crick Institute, 1 Midland Road, Lon- don, NW1 1AT, UK 4. UCL Genetics Institute, University College Lon- don, Gower Street, London, WC1E 6BT, UK *. Author for correspondence: [email protected] Abstract Background: Ascidians, a tunicate class, use a mitochondrial ge- netic code that is distinct from vertebrates and other invertebrates. Though it has been used to translate the coding sequences from other tunicate species on a case-by-case basis, it is has not been investi- gated whether this can be done systematically. This is an impor- tant because a) some tunicate mitochondrial sequences are currently translated with the invertebrate code by repositories such as NCBI's GenBank, and b) uncertainties about the genetic code to use can com- plicate or introduce errors in phylogenetic studies based on translated mitochondrial protein sequences. Methods: We collected publicly available nucleotide sequences for non-ascidian tunicates including appendicularians such as Oikopleura dioica, translated them using the ascidian mitochondrial code, and built multiple sequence alignments covering all tunicate classes. -
Life-History Strategies of a Native Marine Invertebrate Increasingly Exposed to Urbanisation and Invasion
Temporal Currency: Life-history strategies of a native marine invertebrate increasingly exposed to urbanisation and invasion A thesis submitted in partial fulfilment of the requirements for the degree of Master of Science in Zoology University of Canterbury New Zealand Jason Suwandy 2012 Contents List of Figures ......................................................................................................................................... iii List of Tables .......................................................................................................................................... vi Acknowledgements ............................................................................................................................... vii Abstract ................................................................................................................................................ viii CHAPTER ONE - General Introduction .................................................................................................... 1 1.1 Marine urbanisation and invasion ................................................................................................ 2 1.2 Successful invasion and establishment of populations ................................................................ 4 1.3 Ascidians ....................................................................................................................................... 7 1.4 Native ascidians as study organisms ............................................................................................ -
Tunicate Mitogenomics and Phylogenetics: Peculiarities of the Herdmania Momus Mitochondrial Genome and Support for the New Chordate Phylogeny
Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny. Tiratha Raj Singh, Georgia Tsagkogeorga, Frédéric Delsuc, Samuel Blanquart, Noa Shenkar, Yossi Loya, Emmanuel Douzery, Dorothée Huchon To cite this version: Tiratha Raj Singh, Georgia Tsagkogeorga, Frédéric Delsuc, Samuel Blanquart, Noa Shenkar, et al.. Tu- nicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny.. BMC Genomics, BioMed Central, 2009, 10, pp.534. 10.1186/1471-2164-10-534. halsde-00438100 HAL Id: halsde-00438100 https://hal.archives-ouvertes.fr/halsde-00438100 Submitted on 2 Dec 2009 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. BMC Genomics BioMed Central Research article Open Access Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny Tiratha Raj Singh†1, Georgia Tsagkogeorga†2, Frédéric Delsuc2, Samuel Blanquart3, Noa -
1 Phylogeny of the Families Pyuridae and Styelidae (Stolidobranchiata
* Manuscript 1 Phylogeny of the families Pyuridae and Styelidae (Stolidobranchiata, Ascidiacea) 2 inferred from mitochondrial and nuclear DNA sequences 3 4 Pérez-Portela Ra, b, Bishop JDDb, Davis ARc, Turon Xd 5 6 a Eco-Ethology Research Unit, Instituto Superior de Psicologia Aplicada (ISPA), Rua 7 Jardim do Tabaco, 34, 1149-041 Lisboa, Portugal 8 9 b Marine Biological Association of United Kingdom, The Laboratory Citadel Hill, PL1 10 2PB, Plymouth, UK, and School of Biological Sciences, University of Plymouth PL4 11 8AA, Plymouth, UK 12 13 c School of Biological Sciences, University of Wollongong, Wollongong NSW 2522 14 Australia 15 16 d Centre d’Estudis Avançats de Blanes (CSIC), Accés a la Cala St. Francesc 14, Blanes, 17 Girona, E-17300, Spain 18 19 Email addresses: 20 Bishop JDD: [email protected] 21 Davis AR: [email protected] 22 Turon X: [email protected] 23 24 Corresponding author: 25 Rocío Pérez-Portela 26 Eco-Ethology Research Unit, Instituto Superior de Psicologia Aplicada (ISPA), Rua 27 Jardim do Tabaco, 34, 1149-041 Lisboa, Portugal 28 Phone: + 351 21 8811226 29 Fax: + 351 21 8860954 30 [email protected] 31 1 32 Abstract 33 34 The Order Stolidobranchiata comprises the families Pyuridae, Styelidae and Molgulidae. 35 Early molecular data was consistent with monophyly of the Stolidobranchiata and also 36 the Molgulidae. Internal phylogeny and relationships between Styelidae and Pyuridae 37 were inconclusive however. In order to clarify these points we used mitochondrial and 38 nuclear sequences from 31 species of Styelidae and 25 of Pyuridae. Phylogenetic trees 39 recovered the Pyuridae as a monophyletic clade, and their genera appeared as 40 monophyletic with the exception of Pyura. -
Can Novel Genetic Analyses Help to Identify Lowdispersal Marine
Can novel genetic analyses help to identify low-dispersal marine invasive species? Peter R. Teske1,2, Jonathan Sandoval-Castillo1, Jonathan M. Waters3 & Luciano B. Beheregaray1 1Molecular Ecology Laboratory, School of Biological Sciences, Flinders University, Adelaide, South Australia 5001, Australia 2Department of Zoology, University of Johannesburg, Auckland Park, 2006, Johannesburg, South Africa 3Department of Zoology, University of Otago, PO Box 56, Dunedin, New Zealand Keywords Abstract Ascidian, biological invasion, coalescent theory, founder effect, genetic bottleneck, Genetic methods can be a powerful tool to resolve the native versus introduced microsatellites, sea squirt. status of populations whose taxonomy and biogeography are poorly understood. The genetic study of introduced species is presently dominated by analyses that Correspondence identify signatures of recent colonization by means of summary statistics. Unfor- Luciano B. Beheregaray tunately, such approaches cannot be used in low-dispersal species, in which Molecular Ecology Laboratory, School of recently established populations originating from elsewhere in the species’ native Biological Sciences, Flinders University, range also experience periods of low population size because they are founded by Adelaide, SA 5001, Australia. Tel: +61 8 8201 5243; Fax: +61 8 8201 3015; few individuals. We tested whether coalescent-based molecular analyses that pro- E-mail: Luciano.beheregaray@flinders.edu.au vide detailed information about demographic history supported the hypothesis that a sea squirt whose distribution is centered on Tasmania was recently intro- Funding Information duced to mainland Australia and New Zealand through human activities. Meth- This study was funded by the Australian ods comparing trends in population size (Bayesian Skyline Plots and Research Council (DP110101275 to Approximate Bayesian Computation) were no more informative than summary Beheregaray, Moller€ & Waters). -
Ascidian News #82 December 2018
ASCIDIAN NEWS* Gretchen Lambert 12001 11th Ave. NW, Seattle, WA 98177 206-365-3734 [email protected] home page: http://depts.washington.edu/ascidian/ Number 82 December 2018 A big thank-you to all who sent in contributions. There are 85 New Publications listed at the end of this issue. Please continue to send me articles, and your new papers, to be included in the June 2019 issue of AN. It’s never too soon to plan ahead. *Ascidian News is not part of the scientific literature and should not be cited as such. NEWS AND VIEWS 1. From Stefano Tiozzo ([email protected]) and Remi Dumollard ([email protected]): The 10th Intl. Tunicata Meeting will be held at the citadel of Saint Helme in Villefranche sur Mer (France), 8- 12 July 2019. The web site with all the information will be soon available, save the date! We are looking forward to seeing you here in the Riviera. A bientôt! Remi and Stefano 2. The 10th Intl. Conference on Marine Bioinvasions was held in Puerto Madryn, Patagonia, Argentina, October 16-18. At the conference website (http://www.marinebioinvasions.info/index) the program and abstracts in pdf can be downloaded. Dr. Rosana Rocha presented one of the keynote talks: "Ascidians in the anthropocene - invasions waiting to happen". See below under Meetings Abstracts for all the ascidian abstracts; my thanks to Evangelina Schwindt for compiling them. The next (11th) meeting will be in Annapolis, Maryland, organized by Greg Ruiz, Smithsonian Invasions lab, date to be determined. 3. Conference proceedings of the May 2018 Invasive Sea Squirt Conference will be peer reviewed and published in a special issue of the REABIC journal Management of Biological Invasions. -
Phylum: Chordata
PHYLUM: CHORDATA Authors Shirley Parker-Nance1 and Lara Atkinson2 Citation Parker-Nance S. and Atkinson LJ. 2018. Phylum Chordata In: Atkinson LJ and Sink KJ (eds) Field Guide to the Ofshore Marine Invertebrates of South Africa, Malachite Marketing and Media, Pretoria, pp. 477-490. 1 South African Environmental Observation Network, Elwandle Node, Port Elizabeth 2 South African Environmental Observation Network, Egagasini Node, Cape Town 477 Phylum: CHORDATA Subphylum: Tunicata Sea squirts and salps Urochordates, commonly known as tunicates Class Thaliacea (Salps) or sea squirts, are a subphylum of the Chordata, In contrast with ascidians, salps are free-swimming which includes all animals with dorsal, hollow in the water column. These organisms also ilter nerve cords and notochords (including humans). microscopic particles using a pharyngeal mucous At some stage in their life, all chordates have slits net. They move using jet propulsion and often at the beginning of the digestive tract (pharyngeal form long chains by budding of new individuals or slits), a dorsal nerve cord, a notochord and a post- blastozooids (asexual reproduction). These colonies, anal tail. The adult form of Urochordates does not or an aggregation of zooids, will remain together have a notochord, nerve cord or tail and are sessile, while continuing feeding, swimming, reproducing ilter-feeding marine animals. They occur as either and growing. Salps can range in size from 15-190 mm solitary or colonial organisms that ilter plankton. in length and are often colourless. These organisms Seawater is drawn into the body through a branchial can be found in both warm and cold oceans, with a siphon, into a branchial sac where food particles total of 52 known species that include South Africa are removed and collected by a thin layer of mucus within their broad distribution. -
Novel Microsatellite Markers for Pyura Chilensis Reveal Fine-Scale Genetic Structure Along the Southern Coast of Chile
Mar Biodiv DOI 10.1007/s12526-017-0672-9 ORIGINAL PAPER Novel microsatellite markers for Pyura chilensis reveal fine-scale genetic structure along the southern coast of Chile E. C. Giles1 & C. Petersen-Zúñiga1 & S. Morales-González1 & S. Quesada-Calderón1 & Pablo Saenz-Agudelo1 Received: 25 August 2016 /Revised: 22 February 2017 /Accepted: 23 February 2017 # Senckenberg Gesellschaft für Naturforschung and Springer-Verlag Berlin Heidelberg 2017 Abstract Studying the geographic scale of gene flow and here, it seems possible that genetic structure at this spatial population structure in marine populations can be a powerful scale is driven to some extent by local population dynamics tool with which to infer patterns of larval dispersal averaged (deviations from random mating and/or a large proportion of across generations. Here, we describe the development of ten larvae settling in proximity of relatives), yet infrequent long- novel polymorphic microsatellite markers for an important distance dispersal events might also be responsible for the endemic ascidian, Pyura chilensis, of the southeastern relatively weak spatial heterogeneity between sites. Overall, Pacific, and we report the results from fine-scale genetic struc- our results both highlight the utility of this new marker set for ture analysis of 151 P. chilensis individuals sampled from five population genetic studies of this species and provide new sites constituting ∼80 km of coastline in southern Chile. All evidence regarding the complexity of the small-scale popula- microsatellite markers were highly polymorphic (number of tion structure of this species. alleles ranged from 12 to 36). Our results revealed significant deviations from Hardy–Weinberg equilibrium (HWE) for Keywords Population genetics . -
1 Contemporary Climate Change Hinders Hybrid Performance of Ecologically Dominant
1 Contemporary climate change hinders hybrid performance of ecologically dominant 2 marine invertebrates 3 4 Jamie Hudson1*, Christopher D McQuaid2, Marc Rius1,3 5 6 1 School of Ocean and Earth Science, National Oceanography Centre Southampton, 7 University of Southampton, European Way, Southampton, SO14 3ZH, United Kingdom 8 2 Coastal Research Group, Department of Zoology and Entomology, Rhodes University, G3, 9 South Africa 10 3 Department of Zoology, Centre for Ecological Genomics and Wildlife Conservation, 11 University of Johannesburg, Auckland Park, South Africa 12 * Corresponding email: [email protected] 13 14 Running title: Climate change and hybrid performance 15 Acknowledgements 16 We would like to thank Jaqui Trassierra, Aldwyn Ndhlovu, and Cristian Monaco for their 17 assistance in sample collection. We acknowledge Carlota Fernández Muñiz for her 18 invaluable assistance in the culturing of algae for the experiments, Dr Ivan Haigh for 19 assistance collecting and analysing seawater temperature data, and Prof Dustin Marshall for 20 his help in methodological aspects. Funding for JH’s stay at Rhodes University was provided 21 for by the Research Training and Support Grant from the Southampton Marine and 22 Maritime Institution. This work is based upon research supported by the South African 23 Research Chairs Initiative of the Department of Science and Technology and the National 24 Research Foundation. 1 25 26 Abstract 27 Human activities alter patterns of biodiversity, particularly through species extinctions and 28 range contractions. Two of these activities are human mediated transfer of species and 29 contemporary climate change, and both allow previously isolated genotypes to come into 30 contact and hybridise, potentially altering speciation rates. -
Mitochondrial Genetic Code in Tunicates[Version
F1000Research 2020, 8:2072 Last updated: 23 SEP 2021 RESEARCH ARTICLE Widespread use of the “ascidian” mitochondrial genetic code in tunicates [version 2; peer review: 2 approved] Julien Pichon 1,2, Nicholas M. Luscombe 1,3,4, Charles Plessy 1 1Genomics and Regulatory Systems Unit, Okinawa Institute of Science and Technology Graduate University, Onna-son, Okinawa, 904-0495, Japan 2Université de Paris, Paris, France 3The Francis Crick Institute, London, NW1 1AT, UK 4Genetics Institute, University College London, London, WC1E 6BT, UK v2 First published: 10 Dec 2019, 8:2072 Open Peer Review https://doi.org/10.12688/f1000research.21551.1 Latest published: 14 Apr 2020, 8:2072 https://doi.org/10.12688/f1000research.21551.2 Reviewer Status Invited Reviewers Abstract Background: Ascidians, a tunicate class, use a mitochondrial genetic 1 2 code that is distinct from vertebrates and other invertebrates. Though it has been used to translate the coding sequences from other version 2 tunicate species on a case-by-case basis, it is has not been (revision) investigated whether this can be done systematically. This is an 14 Apr 2020 important because a) some tunicate mitochondrial sequences are currently translated with the invertebrate code by repositories such as version 1 NCBI GenBank, and b) uncertainties about the genetic code to use can 10 Dec 2019 report report complicate or introduce errors in phylogenetic studies based on translated mitochondrial protein sequences. 1. Patrick Lemaire , University of Methods: We collected publicly available nucleotide sequences for non-ascidian tunicates including appendicularians such as Oikopleura Montpellier, Montpellier, France dioica, translated them using the ascidian mitochondrial code, and built multiple sequence alignments covering all tunicate classes. -
Pyura Stolonifera (Heller) (Tunicata: Ascidiacea) on the Natal Coast
46 S.·AfL Tydskr. Dierk. 1994,29(1) Macroinvertebrate communities associated with intertidal and subtidal beds of Pyura stolonifera (Heller) (Tunicata: Ascidiacea) on the Natal coast P.J. Fielding· Oceanographic Research Institule, P.O. Box 10712, Marine Parade, 4056, South Africa K.A. Weerts and A.T. Forbes Biology Department, University of Natal, King George V Avenue, Durban, 4001, South Africa Received 26 January 1993; accepted 15 July 1993 The solitary ascidian Pyura st%nifera occurs in dense beds on the low intertidal and shallow subtidal rocky shore along the entire Soulh African coastline. The organism is used as bait by fishermen and is also heavily exploited for food in certain areas. The crevices and interstices between individuals in dense beds of P. stolonifera provide a safe and stable habitat for a wide variety of benthic macrainvertebrates. Sixty-four and 61 taxa representing 10 phyla, of associated organisms were recorded respectively in an intertidal and a subtidal P. stoJon;fera bed. Forty-two taxa were common to both. but communities of macroinvertebrates associated with intertidal and subtidal P. stolonnera beds were different. Numerically, polyehaetes (30%) were the dominant group intertidally, and crustaceans (40'%) subtidally. Porifera formed 71<:01.:, of the biomass of associated intertidal organisms, while subtidal biomass was dominated by the bivalves Striostrea margaritaeea and Perna perna (87%). Mean dry biomass of maeroinvertebrates was 366 g.m-2 (SO = 196) intertidally and 670 g.m-" (SO = 119) subtidally. These values are between four and eight times higher than those recorded on the southern Cape coast. Recolonization of cleared areas is slow, so considerable secondary production is lost when harvesting practices result in bare patches in P.