One Tool, Many Languages: Language-Parametric Transformation with Incremental Parametric Syntax
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Source-To-Source Translation and Software Engineering
Journal of Software Engineering and Applications, 2013, 6, 30-40 http://dx.doi.org/10.4236/jsea.2013.64A005 Published Online April 2013 (http://www.scirp.org/journal/jsea) Source-to-Source Translation and Software Engineering David A. Plaisted Department of Computer Science, University of North Carolina at Chapel Hill, Chapel Hill, USA. Email: [email protected] Received February 5th, 2013; revised March 7th, 2013; accepted March 15th, 2013 Copyright © 2013 David A. Plaisted. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. ABSTRACT Source-to-source translation of programs from one high level language to another has been shown to be an effective aid to programming in many cases. By the use of this approach, it is sometimes possible to produce software more cheaply and reliably. However, the full potential of this technique has not yet been realized. It is proposed to make source- to-source translation more effective by the use of abstract languages, which are imperative languages with a simple syntax and semantics that facilitate their translation into many different languages. By the use of such abstract lan- guages and by translating only often-used fragments of programs rather than whole programs, the need to avoid writing the same program or algorithm over and over again in different languages can be reduced. It is further proposed that programmers be encouraged to write often-used algorithms and program fragments in such abstract languages. Libraries of such abstract programs and program fragments can then be constructed, and programmers can be encouraged to make use of such libraries by translating their abstract programs into application languages and adding code to join things together when coding in various application languages. -
Why Is C. Diff So Hard to Culture and Kill?
Why is C. diff so hard to culture and kill? Clostridium difficile, commonly referred to as C. diff, is the #1 nosocomial infection in hospitals (it actually kicked staph infections out of the top spot). At Assurance, we test for this organism as part of our Gastrointestinal (GI) panel. C. diff is a gram-positive anaerobe, meaning it does not like oxygen. Its defensive mechanism is sporulation – where it essentially surrounds itself with a tough outer layer of keratin and can live in water, soil, etc. for over a decade. For reference, anthrax is another organism that sporulates. Once C. diff sporulates, it is very hard to kill and in fact, bleach is one of the only disinfectants that work. Unfortunately, it can spread quickly throughout hospitals. Spores of C. diff are found all over hospital surfaces and even in some hospital water systems. It’s the most threatening for those who are immunocompromised or the elderly, who are the most likely to end up with C. diff infections. With our PCR testing, we’re looking for the C. diff organism itself but we’re also looking at the production of toxin. Unless it produces toxins A AND B together OR toxin B, C. diff doesn’t cause severe disease. Many babies are exposed to it during birth or in the hospitals and may test positive on our GI panel. Unless they are expressing those toxins (both toxin A&B or just toxin B) it is not considered a clinical infection. Studies show that toxins A&B together causes infection, as well as toxin B. -
Extending Fortran with Meta-Programming
OpenFortran: Extending Fortran with Meta-programming Songqing Yue and Jeff Gray Department of Computer Science University of Alabama Tuscaloosa, AL, USA {syue, gray}@cs.ua.edu Abstract—Meta-programming has shown much promise for manipulated [1]. MOPs add the ability of meta-programming improving the quality of software by offering programming to programming languages by providing users with standard language techniques to address issues of modularity, reusability, interfaces to modify the internal implementation of the maintainability, and extensibility. A system that supports meta- program. Through the interface, programmers can programming is able to generate or manipulate other programs incrementally change the implementation and the behavior of a to extend their behavior. This paper describes OpenFortran, a program to better suit their needs. Furthermore, a metaprogram Meta-Object Protocol (MOP) that is able to bring the power of can capture the needs of a commonly needed feature and be meta-programming to Fortran, one of the most widely used applied to several different base programs. languages in the area of High Performance Computing (HPC). OpenFortran provides a framework that allows library A MOP may perform the underling adaptation of the base developers to build arbitrary source-to-source program program at either run-time or compile-time. Run-time MOPs transformation libraries for Fortran programs. To relieve the function while a program is executing and can be used to burden of learning the details about how the underlying perform real-time adaptation, for example the Common Lisp transformations are performed, a domain-specific language Object System (CLOS) [13] that allows the mechanisms of named SPOT has been created that allows developers to specify inheritance, method dispatching, and class instantiation to be direct manipulation of programs. -
ROSE Tutorial: a Tool for Building Source-To-Source Translators Draft Tutorial (Version 0.9.11.115)
ROSE Tutorial: A Tool for Building Source-to-Source Translators Draft Tutorial (version 0.9.11.115) Daniel Quinlan, Markus Schordan, Richard Vuduc, Qing Yi Thomas Panas, Chunhua Liao, and Jeremiah J. Willcock Lawrence Livermore National Laboratory Livermore, CA 94550 925-423-2668 (office) 925-422-6278 (fax) fdquinlan,panas2,[email protected] [email protected] [email protected] [email protected] [email protected] Project Web Page: www.rosecompiler.org UCRL Number for ROSE User Manual: UCRL-SM-210137-DRAFT UCRL Number for ROSE Tutorial: UCRL-SM-210032-DRAFT UCRL Number for ROSE Source Code: UCRL-CODE-155962 ROSE User Manual (pdf) ROSE Tutorial (pdf) ROSE HTML Reference (html only) September 12, 2019 ii September 12, 2019 Contents 1 Introduction 1 1.1 What is ROSE.....................................1 1.2 Why you should be interested in ROSE.......................2 1.3 Problems that ROSE can address...........................2 1.4 Examples in this ROSE Tutorial...........................3 1.5 ROSE Documentation and Where To Find It.................... 10 1.6 Using the Tutorial................................... 11 1.7 Required Makefile for Tutorial Examples....................... 11 I Working with the ROSE AST 13 2 Identity Translator 15 3 Simple AST Graph Generator 19 4 AST Whole Graph Generator 23 5 Advanced AST Graph Generation 29 6 AST PDF Generator 31 7 Introduction to AST Traversals 35 7.1 Input For Example Traversals............................. 35 7.2 Traversals of the AST Structure............................ 36 7.2.1 Classic Object-Oriented Visitor Pattern for the AST............ 37 7.2.2 Simple Traversal (no attributes)....................... 37 7.2.3 Simple Pre- and Postorder Traversal.................... -
Towards Large-Scale Refactoring for Ocaml
Towards Large-scale Refactoring for OCaml REUBEN N. S. ROWE, University of Kent, UK SIMON J. THOMPSON, University of Kent, UK Refactoring is the process of changing the way a program works without changing its overall behaviour. The functional programming paradigm presents its own unique challenges to refactoring. For the OCaml language in particular, the expressiveness of its module system makes this a highly non-trivial task. The use of PPX preprocessors, other language extensions, and idiosyncratic build systems complicates matters further. We begin to address the question of how to refactor large OCaml programs by looking at a particular refactoring—value binding renaming—and implementing a prototype tool to carry it out. Our tool, Rotor, is developed in OCaml itself and combines several features to manage the complexities of refactoring OCaml code. Firstly it defines a rich, hierarchical way of identifying bindings which distinguishes between structures and functors and their associated module types, and is able to refer directly to functor parameters. Secondly it makes use of the recently developed visitors library to perform generic traversals of abstract syntax trees. Lastly it implements a notion of ‘dependency’ between renamings, allowing refactorings to be computed in a modular fashion. We evaluate Rotor using a snapshot of Jane Street’s core library and its dependencies, comprising some 900 source files across 80 libraries, and a test suite of around 3000 renamings. We propose that the notion of dependency is a general one for refactoring, distinct from a refactoring ‘precondition’. Dependencies may actually be mutual, in that all must be applied together for each one individually to be correct, and serve as declarative specifications of refactorings. -
Combining Source and Target Level Cost Analyses for Ocaml Programs
Combining Source and Target Level Cost Analyses for OCaml Programs Stefan K. Muller Jan Hoffmann Carnegie Mellon University Carnegie Mellon University Abstract bounding gas usage in smart contracts [24]. More generally, Deriving resource bounds for programs is a well-studied it is an appealing idea to provide programmers with imme- problem in the programming languages community. For com- diate feedback about the efficiency of their code at design piled languages, there is a tradeoff in deciding when during time. compilation to perform such a resource analysis. Analyses at When designing a resource analysis for a compiled higher- the level of machine code can precisely bound the wall-clock level language, there is a tension between working on the execution time of programs, but often require manual anno- source code, the target code, or an intermediate represen- tations describing loop bounds and memory access patterns. tation. Advantages of analyzing the source code include Analyses that run on source code can more effectively derive more effective interaction with the programmer and more such information from types and other source-level features, opportunities for automation since the control flow and type but produce abstract bounds that do not directly reflect the information are readily available. The advantage of analyz- execution time of the compiled machine code. ing the target code is that analysis results apply to the code This paper proposes and compares different techniques for that is eventually executed. Many of the tools developed combining source-level and target-level resource analyses in in the programming languages community operate on the the context of the functional programming language OCaml. -
Tracking Computer Use with the Windows® Registry Dataset Doug
Tracking Computer Use with the Windows® Registry Dataset Doug White Disclaimer Trade names and company products are mentioned in the text or identified. In no case does such identification imply recommendation or endorsement by the National Institute of Standards and Technology, nor does it imply that the products are necessarily the best available for the purpose. Statement of Disclosure This research was funded by the National Institute of Standards and Technology Office of Law Enforcement Standards, the Department of Justice National Institute of Justice, the Federal Bureau of Investigation and the National Archives and Records Administration. National Software Reference Library & Reference Data Set The NSRL is conceptually three objects: • A physical collection of software • A database of meta-information • A subset of the database, the Reference Data Set The NSRL is designed to collect software from various sources and incorporate file profiles computed from this software into a Reference Data Set of information. Windows® Registry Data Set It is possible to compile a historical list of applications based on RDS metadata and residue files. Many methods can be used to remove application files, but these may not purge the Registry. Examining the Registry for residue can augment a historical list of applications or provide additional context about system use. Windows® Registry Data Set (WiReD) The WiReD contains changes to the Registry caused by application installation, de-installation, execution or other modifying operations. The applications are chosen from the NSRL collection, to be of interest to computer forensic examiners. WiReD is currently an experimental prototype. NIST is soliciting feedback from the computer forensics community to improve and extend its usefulness. -
A Bundle of Program Transformation Tools System Description
¡ ¢ £ ¤ ¦ ¨ ¨ ! $ % & ! % $ ' ( * * ( + - . / 0 XT: a bundle of program transformation tools system description Merijn de Jonge 1 CWI, Department SEN, PO Box 94079, 1090 GB Amsterdam, The Netherlands Eelco Visser 2 Universiteit Utrecht, Institute of Information and Computing Sciences PO Box 80089, 3508 TB Utrecht, The Netherlands Joost Visser 3 CWI, Department SEN, PO Box 94079, 1090 GB Amsterdam, The Netherlands Abstract XT bundles existing and newly developed program transformation libraries and tools into an open framework that supports component-based development of program transforma- tions. We discuss the roles of XT’s constituents in the development process of program transformation tools, as well as some experiences with building program transformation systems with XT. 1 Introduction Program transformation encompasses a variety of different, but related, language processing scenarios, such as optimization, compilation, normalization, and reno- vation. Across these scenarios, many common, or similar subtasks can be distin- guished, which opens possibilities for software reuse. To support and demonstrate such reuse across program transformation project boundaries, we have developed XT. XT is a bundle of existing and newly developed libraries and tools useful in the 4 Email:[email protected] 5 Email:[email protected] 6 Email:[email protected] 8 : : ; < > @ BC E G H J @ L N BE H P CH R T V CH Y V H [ ] _ ] 7 c 79 a b d f g i b j g a m oq q b s j g a m oq q b s context of program transformation. It bundles its constituents into an open frame- work for component-based transformation tool development, which is flexible and extendible. -
When Polyhedral Transformations Meet SIMD Code Generation
When Polyhedral Transformations Meet SIMD Code Generation Martin Kong Richard Veras Kevin Stock Ohio State University Carnegie Mellon University Ohio State University [email protected] [email protected] [email protected] Franz Franchetti Louis-Noel¨ Pouchet P. Sadayappan Carnegie Mellon University University of California Los Angeles Ohio State University [email protected] [email protected] [email protected] Abstract While hand tuned library kernels such as GotoBLAS address all Data locality and parallelism are critical optimization objectives for the above factors to achieve over 95% of machine peak for spe- performance on modern multi-core machines. Both coarse-grain par- cific computations, no vectorizing compiler today comes anywhere allelism (e.g., multi-core) and fine-grain parallelism (e.g., vector SIMD) close. Recent advances in polyhedral compiler optimization [5, 11] must be effectively exploited, but despite decades of progress at both have resulted in effective approaches to tiling for cache locality, ends, current compiler optimization schemes that attempt to address even for imperfectly nested loops. However, while significant per- data locality and both kinds of parallelism often fail at one of the three formance improvement over untiled code has been demonstrated, objectives. the absolute achieved performance is still very far from machine We address this problem by proposing a 3-step framework, which peak. A significant challenge arises from the fact that polyhedral aims for integrated data locality, multi-core parallelism and SIMD exe- cution of programs. We define the concept of vectorizable codelets, with compiler transformations to produce tiled code generally require properties tailored to achieve effective SIMD code generation for the auxiliary transformations like loop skewing, causing much more codelets. -
Unix Programmer's Manual
There is no warranty of merchantability nor any warranty of fitness for a particu!ar purpose nor any other warranty, either expressed or imp!ied, a’s to the accuracy of the enclosed m~=:crials or a~ Io ~helr ,~.ui~::~::.j!it’/ for ~ny p~rficu~ar pur~.~o~e. ~".-~--, ....-.re: " n~ I T~ ~hone Laaorator es 8ssumg$ no rO, p::::nS,-,,.:~:y ~or their use by the recipient. Furln=,, [: ’ La:::.c:,:e?o:,os ~:’urnes no ob~ja~tjon ~o furnish 6ny a~o,~,,..n~e at ~ny k:nd v,,hetsoever, or to furnish any additional jnformstjcn or documenta’tjon. UNIX PROGRAMMER’S MANUAL F~ifth ~ K. Thompson D. M. Ritchie June, 1974 Copyright:.©d972, 1973, 1974 Bell Telephone:Laboratories, Incorporated Copyright © 1972, 1973, 1974 Bell Telephone Laboratories, Incorporated This manual was set by a Graphic Systems photo- typesetter driven by the troff formatting program operating under the UNIX system. The text of the manual was prepared using the ed text editor. PREFACE to the Fifth Edition . The number of UNIX installations is now above 50, and many more are expected. None of these has exactly the same complement of hardware or software. Therefore, at any particular installa- tion, it is quite possible that this manual will give inappropriate information. The authors are grateful to L. L. Cherry, L. A. Dimino, R. C. Haight, S. C. Johnson, B. W. Ker- nighan, M. E. Lesk, and E. N. Pinson for their contributions to the system software, and to L. E. McMahon for software and for his contributions to this manual. -
Formalizing the SSA-Based Compiler for Verified Advanced Program Transformations Jianzhou Zhao University of Pennsylvania, [email protected]
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by ScholarlyCommons@Penn University of Pennsylvania ScholarlyCommons Publicly Accessible Penn Dissertations 1-1-2013 Formalizing the SSA-based Compiler for Verified Advanced Program Transformations Jianzhou Zhao University of Pennsylvania, [email protected] Follow this and additional works at: http://repository.upenn.edu/edissertations Part of the Computer Sciences Commons Recommended Citation Zhao, Jianzhou, "Formalizing the SSA-based Compiler for Verified Advanced Program Transformations" (2013). Publicly Accessible Penn Dissertations. 825. http://repository.upenn.edu/edissertations/825 This paper is posted at ScholarlyCommons. http://repository.upenn.edu/edissertations/825 For more information, please contact [email protected]. Formalizing the SSA-based Compiler for Verified Advanced Program Transformations Abstract Compilers are not always correct due to the complexity of language semantics and transformation algorithms, the trade-offs between compilation speed and verifiability,etc.The bugs of compilers can undermine the source-level verification efforts (such as type systems, static analysis, and formal proofs) and produce target programs with different meaning from source programs. Researchers have used mechanized proof tools to implement verified compilers that are guaranteed to preserve program semantics and proved to be more robust than ad-hoc non-verified compilers. The og al of the dissertation is to make a step towards verifying an industrial strength modern compiler-- LLVM, which has a typed, SSA-based, and general-purpose intermediate representation, therefore allowing more advanced program transformations than existing approaches. The dissertation formally defines the sequential semantics of the LLVM intermediate representation with its type system, SSA properties, memory model, and operational semantics. -
Fine-Grained and Accurate Source Code Differencing Jean-Rémy Falleri, Floréal Morandat, Xavier Blanc, Matias Martinez, Martin Monperrus
Fine-grained and Accurate Source Code Differencing Jean-Rémy Falleri, Floréal Morandat, Xavier Blanc, Matias Martinez, Martin Monperrus To cite this version: Jean-Rémy Falleri, Floréal Morandat, Xavier Blanc, Matias Martinez, Martin Monperrus. Fine- grained and Accurate Source Code Differencing. Proceedings of the International Conference on Automated Software Engineering, 2014, Västeras, Sweden. pp.313-324, 10.1145/2642937.2642982. hal-01054552 HAL Id: hal-01054552 https://hal.archives-ouvertes.fr/hal-01054552 Submitted on 12 Sep 2014 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Fine-grained and Accurate Source Code Differencing Jean-Rémy Falleri Floréal Morandat Xavier Blanc Univ. Bordeaux, Univ. Bordeaux, Univ. Bordeaux, LaBRI, UMR 5800 LaBRI, UMR 5800 LaBRI, UMR 5800 F-33400, Talence, France F-33400, Talence, France F-33400, Talence, France [email protected] [email protected] [email protected] Matias Martinez Martin Monperrus INRIA and University of Lille, INRIA and University of Lille, France France [email protected] [email protected] ABSTRACT are computed between two versions of a same file. The goal At the heart of software evolution is a sequence of edit actions, of an edit script is to accurately reflect the actual change called an edit script, made to a source code file.