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Toward a Resolution of Campanulid Phylogeny, with Special Reference to the Placement of Dipsacales
TAXON 57 (1) • February 2008: 53–65 Winkworth & al. • Campanulid phylogeny MOLECULAR PHYLOGENETICS Toward a resolution of Campanulid phylogeny, with special reference to the placement of Dipsacales Richard C. Winkworth1,2, Johannes Lundberg3 & Michael J. Donoghue4 1 Departamento de Botânica, Instituto de Biociências, Universidade de São Paulo, Caixa Postal 11461–CEP 05422-970, São Paulo, SP, Brazil. [email protected] (author for correspondence) 2 Current address: School of Biology, Chemistry, and Environmental Sciences, University of the South Pacific, Private Bag, Laucala Campus, Suva, Fiji 3 Department of Phanerogamic Botany, The Swedish Museum of Natural History, Box 50007, 104 05 Stockholm, Sweden 4 Department of Ecology & Evolutionary Biology and Peabody Museum of Natural History, Yale University, P.O. Box 208106, New Haven, Connecticut 06520-8106, U.S.A. Broad-scale phylogenetic analyses of the angiosperms and of the Asteridae have failed to confidently resolve relationships among the major lineages of the campanulid Asteridae (i.e., the euasterid II of APG II, 2003). To address this problem we assembled presently available sequences for a core set of 50 taxa, representing the diver- sity of the four largest lineages (Apiales, Aquifoliales, Asterales, Dipsacales) as well as the smaller “unplaced” groups (e.g., Bruniaceae, Paracryphiaceae, Columelliaceae). We constructed four data matrices for phylogenetic analysis: a chloroplast coding matrix (atpB, matK, ndhF, rbcL), a chloroplast non-coding matrix (rps16 intron, trnT-F region, trnV-atpE IGS), a combined chloroplast dataset (all seven chloroplast regions), and a combined genome matrix (seven chloroplast regions plus 18S and 26S rDNA). Bayesian analyses of these datasets using mixed substitution models produced often well-resolved and supported trees. -
ASBS Newsletter Will Recall That the Collaboration and Integration
Newsletter No. 174 March 2018 Price: $5.00 AUSTRALASIAN SYSTEMATIC BOTANY SOCIETY INCORPORATED Council President Vice President Darren Crayn Daniel Murphy Australian Tropical Herbarium (ATH) Royal Botanic Gardens Victoria James Cook University, Cairns Campus Birdwood Avenue PO Box 6811, Cairns Qld 4870 Melbourne, Vic. 3004 Australia Australia Tel: (+617)/(07) 4232 1859 Tel: (+613)/(03) 9252 2377 Email: [email protected] Email: [email protected] Secretary Treasurer Jennifer Tate Matt Renner Institute of Fundamental Sciences Royal Botanic Garden Sydney Massey University Mrs Macquaries Road Private Bag 11222, Palmerston North 4442 Sydney NSW 2000 New Zealand Australia Tel: (+646)/(6) 356- 099 ext. 84718 Tel: (+61)/(0) 415 343 508 Email: [email protected] Email: [email protected] Councillor Councillor Ryonen Butcher Heidi Meudt Western Australian Herbarium Museum of New Zealand Te Papa Tongarewa Locked Bag 104 PO Box 467, Cable St Bentley Delivery Centre WA 6983 Wellington 6140, New Zealand Australia Tel: (+644)/(4) 381 7127 Tel: (+618)/(08) 9219 9136 Email: [email protected] Email: [email protected] Other constitutional bodies Hansjörg Eichler Research Committee Affiliate Society David Glenny Papua New Guinea Botanical Society Sarah Mathews Heidi Meudt Joanne Birch Advisory Standing Committees Katharina Schulte Financial Murray Henwood Patrick Brownsey Chair: Dan Murphy, Vice President, ex officio David Cantrill Grant application closing dates Bob Hill Hansjörg Eichler Research Fund: th th Ad hoc -
Goodenia Pritzelii Domin (Goodeniaceae) from the North Kimberley and Description of G
Volume 21: 9–17 ELOPEA Publication date: 4 April 2018 T dx.doi.org/10.7751/telopea11093 Journal of Plant Systematics plantnet.rbgsyd.nsw.gov.au/Telopea • escholarship.usyd.edu.au/journals/index.php/TEL • ISSN 0312-9764 (Print) • ISSN 2200-4025 (Online) Reinstatement of Goodenia pritzelii Domin (Goodeniaceae) from the north Kimberley and description of G. oenpelliensis as a new species from the Northern Territory Russell L. Barrett1,2,3,4,5,6 and Matthew D. Barrett2,3,4 1Australian National Herbarium, Centre for Australian National Biodiversity Research, National Research Collections Australia, CSIRO, GPO Box 1600, Canberra 2601, Australian Capital Territory 2Botanic Gardens and Parks Authority, Kings Park and Botanic Garden, West Perth, 6005, Western Australia 3Western Australian Herbarium, Department of Parks and Wildlife, Locked Bag 104, Bentley Delivery Centre, Western Australia 6983 4School of Plant Biology, Faculty Science, The University of Western Australia, Crawley, 6009, Western Australia 5Present address: National Herbarium of New South Wales, Royal Botanic Gardens and Domain Trust, Sydney, Mrs Macquaries Road, Sydney 2000, New South Wales 6Author for correspondence: [email protected] Abstract Two species of annual Goodenia from Tropical Australia are investigated. Based on re-examination of types in conjunction with recently collected material, Goodenia pritzelii Domin is reinstated as a poorly known species from the north Kimberley region of Western Australia. Goodenia pritzelii is known only from four collections, one of which is the type, and is clearly allied to G. arachnoidea Carolin, which grows sympatrically with G. pritzelii in one location. The new species G. oenpelliensis R.L.Barrett belonging to sect. -
Phylogeny and Phylogenetic Nomenclature of the Campanulidae Based on an Expanded Sample of Genes and Taxa
Systematic Botany (2010), 35(2): pp. 425–441 © Copyright 2010 by the American Society of Plant Taxonomists Phylogeny and Phylogenetic Nomenclature of the Campanulidae based on an Expanded Sample of Genes and Taxa David C. Tank 1,2,3 and Michael J. Donoghue 1 1 Peabody Museum of Natural History & Department of Ecology & Evolutionary Biology, Yale University, P. O. Box 208106, New Haven, Connecticut 06520 U. S. A. 2 Department of Forest Resources & Stillinger Herbarium, College of Natural Resources, University of Idaho, P. O. Box 441133, Moscow, Idaho 83844-1133 U. S. A. 3 Author for correspondence ( [email protected] ) Communicating Editor: Javier Francisco-Ortega Abstract— Previous attempts to resolve relationships among the primary lineages of Campanulidae (e.g. Apiales, Asterales, Dipsacales) have mostly been unconvincing, and the placement of a number of smaller groups (e.g. Bruniaceae, Columelliaceae, Escalloniaceae) remains uncertain. Here we build on a recent analysis of an incomplete data set that was assembled from the literature for a set of 50 campanulid taxa. To this data set we first added newly generated DNA sequence data for the same set of genes and taxa. Second, we sequenced three additional cpDNA coding regions (ca. 8,000 bp) for the same set of 50 campanulid taxa. Finally, we assembled the most comprehensive sample of cam- panulid diversity to date, including ca. 17,000 bp of cpDNA for 122 campanulid taxa and five outgroups. Simply filling in missing data in the 50-taxon data set (rendering it 94% complete) resulted in a topology that was similar to earlier studies, but with little additional resolution or confidence. -
Employing Hypothesis Testing and Data from Multiple Genomic Compartments to Resolve Recalcitrant Backbone Nodes in Goodenia S.L. T (Goodeniaceae) ⁎ Rachel S
Molecular Phylogenetics and Evolution 127 (2018) 502–512 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Employing hypothesis testing and data from multiple genomic compartments to resolve recalcitrant backbone nodes in Goodenia s.l. T (Goodeniaceae) ⁎ Rachel S. Jabailya,b, , Kelly A. Shepherdc, Pryce S. Michenerb, Caroline J. Bushb, Rodrigo Riverod,e, Andrew G. Gardnerf, Emily B. Sessad,g a Department of Organismal Biology & Ecology, Colorado College, Colorado Springs, CO 80903, USA b Department of Biology, Rhodes College, Memphis, TN 38112, USA c Western Australian Herbarium, Department of Biodiversity, Conservation and Attractions, Kensington, WA 6151, Australia d Department of Biology, University of Florida, Gainesville, FL 32607, USA e Department of Natural Resources and Environmental Management, University of Hawaii– Mānoa, Honolulu, HI 96822, USA f Department of Biological Sciences, California State University, Stanislaus, One University Circle, Turlock, CA 95382, USA g Genetics Institute, University of Florida, Gainesville, FL 32607, USA ARTICLE INFO ABSTRACT Keywords: Goodeniaceae is a primarily Australian flowering plant family with a complex taxonomy and evolutionary Chloroplast genome history. Previous phylogenetic analyses have successfully resolved the backbone topology of the largest clade in Conserved ortholog set (COS) the family, Goodenia s.l., but have failed to clarify relationships within the species-rich and enigmatic Goodenia Genome skimming clade C, a prerequisite for taxonomic revision of the group. We used genome skimming to retrieve sequences for Goodeniaceae chloroplast, mitochondrial, and nuclear markers for 24 taxa representing Goodenia s.l., with a particular focus on Mitochondrial genome Goodenia clade C. We performed extensive hypothesis tests to explore incongruence in clade C and evaluate Phylogeny Rapid radiation statistical support for clades within this group, using datasets from all three genomic compartments. -
Australian Plants Suitable for Tamworth Regional Council Areas
Australian Plants Suitable for Tamworth Regional Council Areas Eucalyptus blakelyi Photo Tony Croft Tamworth Group of Australian Plants Society As at July 2007 Eucalyptus blakelyi II TAMWORTH REGIONAL COUNCIL RAINFALL DATA Most of the Tamworth Regional Council area receives an average annual rainfall of 600 to 800mm except for the north- west corner on the Mount Kaputar plateau and the tablelands country from Bendemeer through Woolbrook to Hanging Rock above Nundle which often receives between 800 to 1000mm. Similarly temperatures vary across the region with average annual minimums on the tablelands and nearby areas between 6 and 9 degrees Celsius. A series of frosts are received across the entire region each winter. Average annual maximums are between 18 and 21 degrees on the tablelands, 21 to 24 degrees across most of the region and 24 to 27 degrees in the west of the region. 1. Barraba 2. Manilla 250 180 160 200 140 120 150 2004/2005 100 2004-2005 80 100 Average Average 60 50 40 20 0 0 il il ec Jan eb ay ec Jan eb ay July Aug Sept Oct Nov D F Apr M June July Aug Sept Oct Nov D F Apr M June March March 3. Nundle 4.Tamworth 250 200 250 200 m 150 2004-2005 2003-2004 150 2003-2004 Average 100 100 2004-2005 m in Rainfall 50 50 0 y t l e 0 ct an h J rc Jul gust Sep O Nov Dec Feb Apri May Jun n b y Ma uly Oct e rch pril une Au J Aug Sept Nov Dec Ja F a A Ma J M Recent and Average Rainfall for Barraba, Manilla, Nundle, Tamworth and Woolbrook Location Rainfall Rainfall Average 2004-2005 2003-2004 Rainfall in mm in mm in mm Barraba 780.9 689 Manilla 627.9 498.1 651.4 Not Nundle 793.7 868 Available Tamworth 629.6 759.2 673 Woolbrook 686.8 784.5 783 More detailed weather information can be found on the Bureau of Meteorology website. -
Good Grief, What's Happening to Goodenia? Kelly A. Shepherd1
39 Phylogenetic placement and biogeographic history of the Australian Annonaceae Tanya Scharaschkin Earth, Environment and Biological Sciences School, Science and Engineering Faculty, Queensland University of Technology, George St, Brisbane, QLD 4001 Email: [email protected] The Annonaceae is a tropical flowering plant family consisting of c. 250 genera and approximately 2,500 species. Forty-eight species were described in a taxonomic revision of the Annonaceae in Australia, with a large number of species, and some genera, considered to be Australian endemics. The monophyly and taxonomic placement of all Australian Annonaceae are investigated using a comprehensive sampling of both Australian and non-Australian representatives from the same or closely-related genera. The results are used to evaluate biogeographic scenarios for a Gondwanan and/or Malesian origin for the Australian Annonaceae. The phylogenetic placement of the Australian taxa is consistent with studies on individual genera. The high level of species endemism seen in Australian Annonaceae is indicative of speciation subsequent to arrival from Asia, due to one or more dispersal or range extension events. Good grief, what’s happening to Goodenia? Kelly A. Shepherd1, Rachel S. Jabaily2, Dianella G. Howarth3 and Timothy J. Motley4 1Western Australian Herbarium, Department of Environment and Conservation, Locked Bag 104, Bentley Delivery Centre, WA 6983 2Department of Biology, Rhodes College, Memphis, TN 38112-1690, USA 3Department of Biological Sciences, St. John’s University, Queens, NY 11439, USA 4Department of Biology, Old Dominion University, Norfolk, VA 23529-0266, USA Corresponding author email: [email protected] A recent cpDNA phylogenetic analysis of monophyletic Goodeniaceae supported two large clades—the smaller ‘LAD’ group comprising Lechenaultia, Anthotium and Dampiera, and the ‘Core Goodeniaceae’ including the monotypic Brunonia australis as sister to Goodenia s.l. -
Glossary of Terms
Appendix A Glossary of Terms Nolans Bore Mine Notice of Intent 126 Glossary of Terms Term Description 232Th An isotope of the element Thorium 238U An isotope of the element Uranium AAPA Aboriginal Areas Protection Authority ADG Australian Code for the Transport of Dangerous Goods by Road and Rail, 6th edition, 1998. ANSTO Australian Nuclear Science and Technology Organisation ARI The Average Recurrence Interval is the average, or expected, value of the periods between exceedances of a given rainfall total accumulated over a given duration ARPANSA Australian Radiation Protection and Nuclear Safety Agency AS Australian Standards BCM Bank Cubic Metre is a measure of the in-situ volume of a material Bench A landform consisting of a long strip of land at constant height in an otherwise sloped area. Benign waste Process or mining waste that is benign to the environment BoM Bureau of Meteorology Bulk density The weight of material (including solid particles and any contained water) per unit volume including water. Ca Calcium Calcium chloride An ionic compound of calcium and chlorine. (CaCl2) CAPEX Capital Expenditure CBR California Bearing Ratio Cheralite (CaTh[PO4]2). The dominant member of the Monazite group. Cl Chlorine CLC Central Land Council Cut-off A specified value below which ore becomes uneconomic for the operator to extract DBIRD Northern Territory Department of Business, Industry and Resource Development DCF Discounted Cash Flow DEH Division of Environment, Heritage and the Arts DN 100 Pipes with a Nominal Diameter of 100 millimetres Nolans Bore Mine Notice of Intent 127 Drill & blast A method in which holes are drilled for explosive charges. -
Characterizing Floral Symmetry in the Core Goodeniaceae with Geometric Morphometrics
RESEARCH ARTICLE Characterizing Floral Symmetry in the Core Goodeniaceae with Geometric Morphometrics Andrew G. Gardner1¤*, Jonathan N. Fitz Gerald1, John Menz1, Kelly A. Shepherd2, Dianella G. Howarth3, Rachel S. Jabaily1 1 Department of Biology, Rhodes College, 2000 N. Parkway, Memphis, Tennessee, United States of America, 2 Science and Conservation Division, Department of Parks and Wildlife, Kensington, Western Australia, Australia, 3 Department of Biological Sciences, St. John’s University, Queens, New York, United States of America ¤ Current address: Department of Biological Sciences, California State University, Stanislaus, Turlock, California, United States of America * [email protected] a11111 Abstract Core Goodeniaceae is a clade of ~330 species primarily distributed in Australia. Considerable variation in flower morphology exists within this group and we aim to use geometric morpho- metrics to characterize this variation across the two major subclades: Scaevola sensu lato (s. OPEN ACCESS l.) and Goodenia s.l., the latter of which was hypothesized to exhibit greater variability in floral Citation: Gardner AG, Fitz Gerald JN, Menz J, symmetry form. We test the hypothesis that floral morphological variation can be adequately Shepherd KA, Howarth DG, Jabaily RS (2016) characterized by our morphometric approach, and that discrete groups of floral symmetry Characterizing Floral Symmetry in the Core morphologies exist, which broadly correlate with subjectively determined groups. From 335 Goodeniaceae with Geometric Morphometrics. PLoS ONE 11(5): e0154736. doi:10.1371/journal. images of 44 species in the Core Goodeniaceae, two principal components were computed pone.0154736 that describe >98% of variation in all datasets. Increasing values of PC1 ventralize the dorsal Editor: Lorenzo Peruzzi, Università di Pisa, ITALY petals (increasing the angle between them), whereas increasing values of PC2 primarily ven- tralize the lateral petals (decreasing the angle between them). -
Abstract Detail Summary Table Like 0 Tweet Share 0 0 Share Presenting Author
Create your own conference schedule! Click here for full instructions Browse by Abstract Detail Summary Table Like 0 Tweet Share 0 0 Share Presenting Author All Authors Systematics Author's Institutions Gardner, Andrew [1], Jabaily, Rachel Schmidt [2], Fitz Gerald, Jonathan [3], Shepherd, Kelly A. [4], Howarth, Dianella [5]. Abstract Title Reconstructing floral shape evolution in the Core Goodeniaceae using Abstract Keywords geometric morphometrics and densely sampled phylogenies. Program/Schedule The predominantly Australian family Goodeniaceae is known for its diverse flower Programs At‐A‐Glance morphologies. These include species with nearly radially symmetric flowers to several forms of zygomorphy, including bilabiate flowers among species of Goodenia and the enigmatic Detailed Programs fan‐flowers exemplified by, but not limited to, Scaevola. We aim to reconstruct the evolution of flower shape in the larger clade of this family (Core Goodeniaceae) to address Custom Schedule several questions: 1) How many times have fan‐flowers evolved? 2) Do some clades exhibit greater floral shape lability? 3) Do the dorsal petals evolve at a higher rate than the lateral Sessions or ventral petals? and 4) To what degree, if any, does floral shape influence diversification rate across the Core Goodeniaceae? Our highly resolved, densely sampled phylogenies for the clade provide the necessary historical structure. For the comparative floral data, we have Date/Time developed a geometric morphometric method to quantitatively characterize flower shape based on our field‐collected and crowdsourced images. This floral morphometric method Locations extracts positional information from five homologous petal apex landmarks, and employs PCA to characterize their variance. The resulting principal components can be reconstructed as continuous characters across the phylogeny and used to effectively cluster species into Search discrete shape groups, permitting the inference of flower shape evolution across more densely sampled phylogenies. -
Ecology of Sydney Plant Species Part 5 Dicotyledon Families Flacourtiaceae to Myrsinaceae
330 Cunninghamia Vol. 5(2): 1997 M a c q u a r i e R i v e r e g n CC a Orange R Wyong g n i Gosford Bathurst d i Lithgow v Mt Tomah i Blayney D R. y r Windsor C t u a o b Oberon s e x r e s G k Penrith w a R Parramatta CT H i ve – Sydney r n a Abe e Liverpool rcro p m e b Botany Bay ie N R Camden iv Picton er er iv R y l l i Wollongong d n o l l o W N Berry NSW Nowra 050 Sydney kilometres Map of the Sydney region For the Ecology of Sydney Plant Species the Sydney region is defined as the Central Coast and Central Tablelands botanical subdivisions. Benson & McDougall, Ecology of Sydney plant species 5 331 Ecology of Sydney Plant Species Part 5 Dicotyledon families Flacourtiaceae to Myrsinaceae Doug Benson and Lyn McDougall Abstract Benson, Doug and McDougall, Lyn (National Herbarium of New South Wales, Royal Botanic Gardens, Sydney, Australia 2000) 1997 Ecology of Sydney Plant Species: Part 5 Dicotyledon families Flacourtiaceae to Myrsinaceae. Cunninghamia 5(2) 330 to 544. Ecological data in tabular form are provided on 297 plant species of the families Flacourtiaceae to Myrsinaceae, 223 native and 74 exotics, mostly naturalised, occurring in the Sydney region, defined by the Central Coast and Central Tablelands botanical subdivisions of New South Wales (approximately bounded by Lake Macquarie, Orange, Crookwell and Nowra). Relevant Local Government Areas are Auburn, Ashfield, Bankstown, Bathurst, Baulkham Hills, Blacktown, Blayney, Blue Mountains, Botany, Burwood, Cabonne, Camden, Campbelltown, Canterbury, Cessnock, Concord, Crookwell, Drummoyne, Evans, Fairfield, Greater Lithgow, Gosford, Hawkesbury, Holroyd, Hornsby, Hunters Hill, Hurstville, Kiama, Kogarah, Ku-Ring-Gai, Lake Macquarie, Lane Cove, Leichhardt, Liverpool, Manly, Marrickville, Mosman, Mulwaree, North Sydney, Oberon, Orange, Parramatta, Penrith, Pittwater, Randwick, Rockdale, Ryde, Rylstone, Shellharbour, Shoalhaven, Singleton, South Sydney, Strathfield, Sutherland, Sydney City, Warringah, Waverley, Willoughby, Wingecarribee, Wollondilly, Wollongong, Woollahra and Wyong. -
Dubbo Region Flora List 2012
Flora List of the Dubbo Area and Central Western Slopes Harlequin Mistletoe Lysiana exocarpi subsp. tenuis Drilliwarrina State Conservation Area Janice Hosking for the Dubbo Field Naturalist and Conservation Society Inc Version: June 2012 www.dubbofieldnats.org.au Flora List of the Dubbo Area and Central Western Slopes Janice Hosking for Dubbo Field Nats This list of approximately 1,300 plant species was prepared by Janice Hosking for the Dubbo Field Naturalist & Conservation Society Inc. Many thanks to Steve Lewer and Chris McRae who spent many hours checking and adding to this list. Cover photo: Anne McAlpine, A map of the area subject to this list is provided below. Data Sources: This list has been compiled from the following information: A Flora of the Dubbo District 25 Miles radius around the city (c. 1950s) compiled by George Althofer, assisted by Andy Graham. Gilgandra Native Flora Reserve Plant List Goonoo State Forest Forestry Commission list, supplemented by Mr. P. Althofer. List No.1 (c 1950s) Goonoo State Forest Dubbo Management Area list of Plants List No.2 The Flora of Mt. Arthur Reserve, Wellington NSW A small list for Goonoo State Forest. Author and date unknown Flora List from Cashells Dam Area, Goonoo State Forest (now CCA) – compiled by Steve Lewer (NSW OEH) Oasis Reserve Plant List (Southwest of Dubbo) – compiled by Robert Gibson (NSW OEH) NSW DECCW Wildlife atlas List 2010,Y.E.T.I. List 2010 PlantNet (NSW Botanic Gardens Records) Various species lists for Dubbo District rural properties – compiled by Steve Lewer (NSW OEH) * Denotes an exotic species ** Now considered to be either locally extinct or possibly a misidentification.