Identification of Two Novel Fibrinogen Bβ Chain Mutations in Two Slovak Families with Quantitative Fibrinogen Disorders
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Exome Sequencing and Clot Lysis Experiments Demonstrate the R458C Mutation of the Alpha Chain of Fibrinogen to Be Associated
Journal of Atherosclerosis and Thrombosis Vol.23, No.4 431 Original Article Exome Sequencing and Clot Lysis Experiments Demonstrate the R458C Mutation of the Alpha Chain of Fibrinogen to be Associated with Impaired Fibrinolysis in a Family with Thrombophilia Israel Fernández-Cadenas1, 2, Anna Penalba2, Cristina Boada2, Caty Carrerra MsC2, Santiago Rodriguez Bueno3, Adoración Quiroga4, Jasone Monasterio4, Pilar Delgado2, Eduardo Anglés-Cano5 and Joan Montaner2 1Stroke pharmacogenomics and genetics laboratory, Fundació Docencia i Recerca MutuaTerrassa, Hospital Mutua de Terrassa, Terrassa, Spain 2Neurovascular Research Laboratory and Neurovascular Unit. Neurology and Medicine Departments-Universitat Autònoma de Barcelona. Vall d’Hebrón Hospital, Barcelona, Spain 3Servicio de Hematología. Hospitals “Vall d’Hebron”, Barcelona, Spain 4Vascular Biology and Haemostasis Research Unit, Vall d’Hebrón Hospital, Barcelona, Spain 5Inserm UMRS 1140, Therapeutic Innovations in Haemostasis, Université Paris Descartes, Paris, France Aim: We report the study of a familial rare disease with recurrent venous thromboembolic events that remained undiagnosed for many years using standard coagulation and hemostasis techniques. Methods: Exome sequencing was performed in three familial cases with venous thromboembolic dis- ease and one familial control using NimbleGen exome array. Clot lysis experiments were performed to analyze the reasons of the altered fibrinolytic activity caused by the mutation found. Results: We found a mutation that consists of a R458C substitution on the fibrinogen alpha chain (FGA) gene confirmed in 13 new familial subjects that causes a rare subtype of dysfibrinogenemia characterized by venous thromboembolic events. The mutation was already reported to be associated with a fibrinogen variant called fibrinogen Bordeaux. Clot-lysis experiments showed a decreased and slower fibrinolytic activity in carriers of this mutation as compared to normal subjects, thus demon- strating an impaired fibrinolysis of fibrinogen Bordeaux. -
Anti-FIBRINOGEN (Human Plasma) (GOAT) Antibody Peroxidase Conjugated - 200-103-240S
Anti-FIBRINOGEN (Human Plasma) (GOAT) Antibody Peroxidase Conjugated - 200-103-240S Code: 200-103-240S Size: 25 µL Product Description: Anti-FIBRINOGEN (Human Plasma) (GOAT) Antibody Peroxidase Conjugated - 200-103-240S Concentration: 1.0 mg/mL by UV absorbance at 280 nm PhysicalState: Liquid (sterile filtered) Label Peroxidase (Horseradish) Host Goat Species Reactivity human Buffer 0.02 M Potassium Phosphate, 0.15 M Sodium Chloride, pH 7.2 Stabilizer 10 mg/mL Bovine Serum Albumin (BSA) - Immunoglobulin and Protease free Preservative 0.01% (w/v) Gentamicin Sulfate. Do NOT add Sodium Azide! Storage Condition Store vial at -20° C or below prior to opening. This vial contains a relatively low volume of reagent (25 µL). To minimize loss of volume dilute 1:10 by adding 225 µL of the buffer stated above directly to the vial. Recap, mix thoroughly and briefly centrifuge to collect the volume at the bottom of the vial. Use this intermediate dilution when calculating final dilutions as recommended below. Store the vial at -20°C or below after dilution. Avoid cycles of freezing and thawing. Synonyms FGA antibody, FGA protein antibody, FGB antibody, FGG antibody, Fib2 antibody, Fibrinogen A alpha polypeptide antibody, Fibrinogen A alpha polypeptide chain antibody, Fibrinogen alpha chain antibody Application Note Anti-FIBRINOGEN Antibody (peroxidase coniugated) antibody is functional in ELISA, western blot, and immunohistochemical assays. Concentrations should be optimized by researcher. Background Peroxidase Conjugated Anti-FIBRINOGEN Antibody is specific of fibrinogen protein. Fibrinogen is a soluble plasma glycoprotein synthesised by the liver that is converted by thrombin into fibrin during blood coagulation. -
Label-Free Proteomic Methodology for the Analysis of Human Kidney Stone Matrix Composition Frank A
Witzmann et al. Proteome Science (2016) 14:4 DOI 10.1186/s12953-016-0093-x METHODOLOGY Open Access Label-free proteomic methodology for the analysis of human kidney stone matrix composition Frank A. Witzmann1*, Andrew P. Evan2, Fredric L. Coe3, Elaine M. Worcester3, James E. Lingeman4 and James C. Williams Jr2 Abstract Background: Kidney stone matrix protein composition is an important yet poorly understood aspect of nephrolithiasis. We hypothesized that this proteome is considerably more complex than previous reports have indicated and that comprehensive proteomic profiling of the kidney stone matrix may demonstrate relevant constitutive differences between stones. We have analyzed the matrices of two unique human calcium oxalate stones (CaOx-Ia and CaOx-Id) using a simple but effective chaotropic reducing solution for extraction/solubilization combined with label-free quantitative mass spectrometry to generate a comprehensive profile of their proteomes, including physicochemical and bioinformatic analysis.` Results: We identified and quantified 1,059 unique protein database entries in the two human kidney stone samples, revealing a more complex proteome than previously reported. Protein composition reflects a common range of proteins related to immune response, inflammation, injury, and tissue repair, along with a more diverse set of proteins unique to each stone. Conclusion: The use of a simple chaotropic reducing solution and moderate sonication for extraction and solubilization of kidney stone powders combined with label-free quantitative mass spectrometry has yielded the most comprehensive list to date of the proteins that constitute the human kidney stone proteome. Keywords: Calcium oxalate, Kidney stone, Label-free quantitative liquid chromatography–tandem mass spectrometry, Matrix protein, Nephrolithiasis, Proteomics Background deposition is the primary event, at least in the formation The organic matrix within urinary stones has long been of CaOx stones over plaque. -
Familial Multiple Coagulation Factor Deficiencies
Journal of Clinical Medicine Article Familial Multiple Coagulation Factor Deficiencies (FMCFDs) in a Large Cohort of Patients—A Single-Center Experience in Genetic Diagnosis Barbara Preisler 1,†, Behnaz Pezeshkpoor 1,† , Atanas Banchev 2 , Ronald Fischer 3, Barbara Zieger 4, Ute Scholz 5, Heiko Rühl 1, Bettina Kemkes-Matthes 6, Ursula Schmitt 7, Antje Redlich 8 , Sule Unal 9 , Hans-Jürgen Laws 10, Martin Olivieri 11 , Johannes Oldenburg 1 and Anna Pavlova 1,* 1 Institute of Experimental Hematology and Transfusion Medicine, University Clinic Bonn, 53127 Bonn, Germany; [email protected] (B.P.); [email protected] (B.P.); [email protected] (H.R.); [email protected] (J.O.) 2 Department of Paediatric Haematology and Oncology, University Hospital “Tzaritza Giovanna—ISUL”, 1527 Sofia, Bulgaria; [email protected] 3 Hemophilia Care Center, SRH Kurpfalzkrankenhaus Heidelberg, 69123 Heidelberg, Germany; ronald.fi[email protected] 4 Department of Pediatrics and Adolescent Medicine, University Medical Center–University of Freiburg, 79106 Freiburg, Germany; [email protected] 5 Center of Hemostasis, MVZ Labor Leipzig, 04289 Leipzig, Germany; [email protected] 6 Hemostasis Center, Justus Liebig University Giessen, 35392 Giessen, Germany; [email protected] 7 Center of Hemostasis Berlin, 10789 Berlin-Schöneberg, Germany; [email protected] 8 Pediatric Oncology Department, Otto von Guericke University Children’s Hospital Magdeburg, 39120 Magdeburg, Germany; [email protected] 9 Division of Pediatric Hematology Ankara, Hacettepe University, 06100 Ankara, Turkey; Citation: Preisler, B.; Pezeshkpoor, [email protected] B.; Banchev, A.; Fischer, R.; Zieger, B.; 10 Department of Pediatric Oncology, Hematology and Clinical Immunology, University of Duesseldorf, Scholz, U.; Rühl, H.; Kemkes-Matthes, 40225 Duesseldorf, Germany; [email protected] B.; Schmitt, U.; Redlich, A.; et al. -
Russell Doolittle Biochemistry Laboratory Records
http://oac.cdlib.org/findaid/ark:/13030/tf0v19n7xm No online items Russell Doolittle Biochemistry Laboratory Records Special Collections & Archives, UC San Diego Special Collections & Archives, UC San Diego Copyright 2005 9500 Gilman Drive La Jolla 92093-0175 [email protected] URL: http://libraries.ucsd.edu/collections/sca/index.html Russell Doolittle Biochemistry MSS 0077 1 Laboratory Records Descriptive Summary Languages: English Contributing Institution: Special Collections & Archives, UC San Diego 9500 Gilman Drive La Jolla 92093-0175 Title: Russell Doolittle Biochemistry Laboratory Records Identifier/Call Number: MSS 0077 Physical Description: 87.4 Linear feet (83 records cartons, 8 archives boxes, 16 oversize folders and 1 art bin item) Date (inclusive): 1971 - 1998 Abstract: The records (1971-1998) of Dr. Russell F. Doolittle's biochemistry laboratory at the University of California, San Diego include notebooks related to the first determination of the complete sequence of amino acids in the human fibrinogen molecule, paper files for the amino acid sequences contained in the protein sequence data bank called NEWAT, as well as other research, correspondence and Protein Society files. Preferred Citation Russell Doolittle Biochemistry Laboratory Records, MSS 0077. Special Collections & Archives, UC San Diego. Administrative History Dr. Russell F. Doolittle, professor of chemistry at the University of California, San Diego, headed a campus science laboratory that conducts research in the evolutionary and structural aspects of proteins. In 1979, Doolittle's laboratory successfully analyzed the structure of the amino acid sequence for the human fibrinogen molecule. During that study, ten to twenty postdoctoral, graduate and undergraduate researchers worked to pull apart and analyze the amino acid sequences in the alpha, beta and gamma chains of fibrinogen. -
Alpha-Dystroglycan Plays Functional Roles in Platelet Aggregation and Thrombus Growth
Alpha-dystroglycan plays functional roles in platelet aggregation and thrombus growth by Reid Gallant A thesis submitted in conformity with the requirements For the degree of Master of Science Graduate Department of Laboratory Medicine and Pathobiology University of Toronto © Copyright by Reid Gallant 2017 i Alpha-dystroglycan Plays Functional Roles in Platelet Aggregation and Thrombus Growth Reid Gallant Master of Science Department of Laboratory Medicine and Pathobiology University of Toronto 2017 ABSTRACT Fibrinogen (Fg) and von Willebrand factor (VWF) have been considered essential for platelet adhesion and aggregation. However, platelet aggregation still occurs in mice lacking Fg and/or VWF but not β3 integrin, suggesting other, unidentified αIIbβ3 integrin ligand(s) mediate platelet aggregation. Through screening published platelet proteomics data, we identified a candidate, alpha-dystroglycan (α-DG). Using Western blot and flow cytometry, I found α-DG is expressed on platelets. Using aggregometry, I observed that antibodies against α-DG or its N- terminal Laminin-binding site, decreased platelet aggregation induced by various platelet agonists in both platelet-rich plasma and gel-filtered platelets. These antibodies also decreased platelet adhesion/aggregation in perfusion chambers independent of α-DG-Laminin interaction. Using laser injury intravital microscopy and carotid artery thrombosis models, we further found that these anti-α-DG antibodies decreased thrombus growth in vivo. Our results showed that α- DG may form an α-DG-fibronectin complex that binds to αIIbβ3 integrin, contributing to platelet adhesion/aggregation, and thrombosis growth. ii Acknowledgements ―It helps a man immensely to be a bit of a hero-worshipper, and the stories of the lives of the masters of medicine do much to stimulate our ambition and rouse our sympathies‖ – Sir William Osler I will always be grateful to my MSc supervisor, Dr. -
Characterization of Glomerular Extracellular Matrix in Iga Nephropathy by Proteomic Analysis of Laser-Captured Microdissected Gl
Paunas et al. BMC Nephrology (2019) 20:410 https://doi.org/10.1186/s12882-019-1598-1 RESEARCH ARTICLE Open Access Characterization of glomerular extracellular matrix in IgA nephropathy by proteomic analysis of laser-captured microdissected glomeruli Flavia Teodora Ioana Paunas1,2* , Kenneth Finne2, Sabine Leh2,3, Tarig Al-Hadi Osman2, Hans-Peter Marti2,4, Frode Berven5 and Bjørn Egil Vikse1,2 Abstract Background: IgA nephropathy (IgAN) involves mesangial matrix expansion, but the proteomic composition of this matrix is unknown. The present study aimed to characterize changes in extracellular matrix in IgAN. Methods: In the present study we used mass spectrometry-based proteomics in order to quantitatively compare protein abundance between glomeruli of patients with IgAN (n = 25) and controls with normal biopsy findings (n = 15). Results: Using a previously published paper by Lennon et al. and cross-referencing with the Matrisome database we identified 179 extracellular matrix proteins. In the comparison between IgAN and controls, IgAN glomeruli showed significantly higher abundance of extracellular matrix structural proteins (e.g periostin, vitronectin, and extracellular matrix protein 1) and extracellular matrix associated proteins (e.g. azurocidin, myeloperoxidase, neutrophil elastase, matrix metalloproteinase-9 and matrix metalloproteinase 2). Periostin (fold change 3.3) and azurocidin (3.0) had the strongest fold change between IgAN and controls; periostin was also higher in IgAN patients who progressed to ESRD as compared to patients who did not. Conclusion: IgAN is associated with widespread changes of the glomerular extracellular matrix proteome. Proteins important in glomerular sclerosis or inflammation seem to be most strongly increased and periostin might be an important marker of glomerular damage in IgAN. -
Characterisation of Cellular Fibrinogen Phosphorylation and Its Functional Implications in Clot Formation
Characterisation of Cellular Fibrinogen Phosphorylation and its Functional Implications in Clot Formation Esther J. Cooke Submitted in accordance with the requirements for the Degree of Doctor of Philosophy The University of Leeds School of Medicine February 2015 The candidate confirms that the work submitted is her own, except where work which has formed part of jointly authored publications has been included. The contribution of the candidate and the other authors to this work has been explicitly indicated below. The candidate confirms that appropriate credit has been given within the thesis where reference has been made to the work of others. The work in Chapters 2 and 3 of the thesis has appeared in publication as follows: Smith, K.A., Pease, R.J., Avery, C.A., Brown, J.M., Adamson, P.J., Cooke, E.J., Neergaard-Petersen, S., Cordell, P.A., Ariëns, R.A., Fishwick, C.W., Philippou, H., Grant, P.J. 2013. The activation peptide cleft exposed by thrombin cleavage of FXIII- A(2) contains a recognition site for the fibrinogen α chain. Blood, 121 (11), 2117-2126. The candidate was responsible for the expression and purification of recombinant fibrinogen. The other authors contributed to study design, laboratory work, data analysis and writing of the manuscript. This copy has been supplied on the understanding that it is copyright material and that no quotation from the thesis may be published without proper acknowledgement. © 2015 The University of Leeds and Esther J. Cooke The right of Esther J. Cooke to be identified as Author of this work has been asserted by her in accordance with the Copyright, Designs and Patents Act 1988. -
Early Diagnosis of Colorectal Cancer Via Plasma Proteomic Analysis of CRC and Advanced Adenomatous Polyp
Gastroenterology and Hepatology From Bed to Bench. ORIGINAL ARTICLE ©2019 RIGLD, Research Institute for Gastroenterology and Liver Diseases Early diagnosis of colorectal cancer via plasma proteomic analysis of CRC and advanced adenomatous polyp Setareh Fayazfar1, Hakimeh Zali2, Afsaneh Arefi Oskouie1, Hamid Asadzadeh Aghdaei3, Mostafa Rezaei Tavirani4, Ehsan Nazemalhosseini Mojarad5 1Faculty of Paramedical Sciences, Shahid Beheshti University of Medical Sciences, Tehran, Iran 2School of Advanced Technologies in Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran 3Basic and Molecular Epidemiology of Gastroenterology Disorders Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran 4Proteomics Research Center, Faculty of Paramedical Sciences, Shahid Beheshti University of Medical Sciences, Tehran, Iran 5Gastroenterology and Liver Diseases Research Center, Research Institute for Gastroenterology and Liver Diseases, Shahid Beheshti University of Medical Sciences, Tehran, Iran ABSTRACT Aim: This paper aimed to identify new candidate biomarkers in blood for early diagnosis of CRC. Background: Colorectal cancer (CRC) is the third most widespread malignancies increasing globally. The high mortality rate associated with colorectal cancer is due to the delayed diagnosis in an advanced stage while the metastasis has occurred. For better clinical management and subsequently to reduce mortality of CRC, early detection biomarkers are in high demand. -
An Itraq-Based Quantitative Proteomic Analysis of Plasma Proteins in Preterm Newborns with Retinopathy of Prematurity
CORE Metadata, citation and similar papers at core.ac.uk Provided by Jagiellonian Univeristy Repository Retina An iTRAQ-Based Quantitative Proteomic Analysis of Plasma Proteins in Preterm Newborns With Retinopathy of Prematurity Magdalena Zasada,1 Maciej Suski,2 Renata Bokiniec,3 Monika Szwarc-Duma,3 Maria Katarzyna Borszewska-Kornacka,3 Jozef´ Madej,2 Beata Bujak-Giz˙ycka,2 Anna Madetko-Talowska,4 Cecilie Revhaug,5 Lars O. Baumbusch,5 Ola D. Saugstad,5 Jacek Jozef´ Pietrzyk,1 and Przemko Kwinta1 1Department of Pediatrics, Jagiellonian University Medical College, Krakow, Poland 2Chair of Pharmacology, Jagiellonian University Medical College, Krakow, Poland 3Neonatal and Intensive Care Department, Medical University of Warsaw, Warsaw, Poland 4Department of Medical Genetics, Jagiellonian University Medical College, Krakow, Poland 5Department of Pediatric Research, Oslo University Hospital, University of Oslo, Oslo, Norway Correspondence: Przemko Kwinta, PURPOSE. Retinopathy of prematurity (ROP) is a vision-threatening complication of a Department of Pediatrics, Jagiello- premature birth, in which the etiology still remains unclear. Importantly, the molecular nian University Medical College, processes that govern these effects can be investigated in a perturbed plasma proteome Wielicka 265, Krakow 30-663, Po- composition. Thus, plasma proteomics may add new insights into a better understanding of land; the pathogenesis of this disease. [email protected]. Submitted: June 15, 2018 METHODS. The cord and peripheral blood of neonates (30 weeks gestational age) was drawn Accepted: August 9, 2018 at birth and at the 36th postmenstrual week (PMA), respectively. Blood samples were retrospectively subdivided into ROP(þ) and ROP(À) groups, according to the development of Citation: Zasada M, Suski M, Bokiniec ROP. -
Table 1. Swine Proteins Identified As Differentially Expressed at 24Dpi in OURT 88/3 Infected Animals
Table 1. swine proteins identified as differentially expressed at 24dpi in OURT 88/3 infected animals. Gene name Protein ID Protein Name -Log p-value control vs A_24DPI Difference control Vs A_24DPI F8 K7GL28 Coagulation factor VIII 2.123919902 5.42533493 PPBP F1RUL6 C-X-C motif chemokine 3.219079808 4.493174871 SDPR I3LDR9 Caveolae associated protein 2 2.191007299 4.085711161 IGHG L8B0X5 IgG heavy chain 2.084611488 -4.282530149 LOC100517145 F1S3H9 Complement C3 (LOC100517145) 3.885740476 -4.364484406 GOLM1 F1S4I1 Golgi membrane protein 1 1.746130664 -4.767168681 FCN2 I3L5W3 Ficolin-2 2.937884686 -6.029483795 Table 2. swine proteins identified as differentially expressed at 7dpi in Benin ΔMGF infected animals. Gene name Protein ID Protein Name -Log p-value control vs B_7DPI Difference control Vs B_7DPI A0A075B7I5 Ig-like domain-containing protein 1.765578164 -3.480728149 ATP5A1 F1RPS8_PIG ATP synthase subunit alpha 2.270386995 3.270935059 LOC100627396 F1RX35_PIG Fibrinogen C-terminal domain-containing protein 2.211242648 3.967363358 LOC100514666;LOC102158263 F1RX36_PIG Fibrinogen alpha chain 2.337934993 3.758180618 FGB F1RX37_PIG Fibrinogen beta chain 2.411948004 4.03753376 PSMA8 F1SBA5_PIG Proteasome subunit alpha type 1.473601007 -3.815182686 ACAN F1SKR0_PIG Aggrecan core protein 1.974489764 -3.726634026 TFG F1SL01_PIG PB1 domain-containing protein 1.809215274 -3.131304741 LOC100154408 F1SSL6_PIG Proteasome subunit alpha type 1.701949053 -3.944885254 PSMA4 F2Z528_PIG Proteasome subunit alpha type 2.045768185 -4.502977371 PSMA5 F2Z5K2_PIG -
The Human in Vivo Biomolecule Corona Onto Pegylated Liposomes
RevisedView metadata, Manuscript citation and similar papers at core.ac.uk brought to you by CORE provided by Nottingham Trent Institutional Repository (IRep) 1 2 3 4 5 6 The human in vivo biomolecule corona onto PEGylated 7 8 liposomes: a proof-of-concept clinical study 9 10 11 Marilena Hadjidemetriou1, Sarah McAdam2, Grace Garner2, Chelsey Thackeray3, David Knight4, Duncan 12 Smith5, Zahraa Al-Ahmady1, Mariarosa Mazza1, Jane Rogan2, Andrew Clamp3 and Kostas Kostarelos1* 13 14 15 16 17 1Nanomedicine Lab, Faculty of Biology, Medicine & Health, AV Hill Building, The University of Manchester, Manchester, United Kingdom; 2 18 Manchester Cancer Research Centre Biobank, The Christie NHS Foundation Trust, CRUK Manchester Institute, Manchester, United Kingdom 3Institute of Cancer Sciences and The Christie NHS Foundation Trust, Manchester Cancer Research Centre (MCRC), 19 University of Manchester, Manchester, United Kingdom 20 4Bio-MS Facility, Michael Smith Building, The University of Manchester, Manchester, United Kingdom; 21 5xCRUK Manchester Institute, The University of Manchester, Manchester, United Kingdom 22 23 24 25 26 27 28 29 30 31 _______________________________________ 32 * Correspondence should be addressed to: [email protected] 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 1 63 64 65 1 2 3 4 5 Abstract 6 7 The self-assembled layered adsorption of proteins onto nanoparticle (NP) surfaces, once in contact 8 with biological fluids, has been termed the ‘protein corona’ and it is gradually seen as a determinant 9 10 factor for the overall biological behavior of NPs.