Chapter 15 Epidemiology
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News Release
News Release U.S. Department of Health and Human Services 202-690-6343 [email protected] www.hhs.gov/news Twitter @SpoxHHS FOR IMMEDIATE RELEASE January 14, 2021 Readout of HHS Secretary Azar’s Remarks to the Department’s Vaccine Consultation Panel Today, HHS Secretary Azar joined the department’s Vaccine Consultation Panel (VCP) for discussion of the ongoing work to deliver COVID-19 vaccines across the country. The VCP is comprised of over 40 external organizations representing a wide swath of sectors crucial to the successful launch of a vaccine, including a range of healthcare providers, seniors, patients, minorities, academia, foundations, and business. The group was assembled last summer to exchange information and insights with leaders at the Department and Operation Warp Speed as part of vaccine development and distribution planning. The VCP, organized by the Office of Intergovernmental and External Affairs, held 11 virtual information sessions with OWS, FDA, NIH, and CDC leaders and today Secretary Azar emphasized the importance of having their diverse perspectives and expertise in responding to the COVID-19 pandemic, thanking them for the valuable input provided to HHS leadership over the last year. He noted the important role they have had in educating physicians, nurses, pharmacists, seniors, and many others over the months on the vaccine development process and in working on specific challenges along the way, like promoting minority participation in vaccine clinical trials. The VCP is yet another example of public/private collaboration, a foundational aspect of the government’s response to the pandemic. During the meeting, Secretary Azar provided an overview of the next phase of OWS’s vaccination plan announced earlier this week. -
Biden-Harris Transition Announces COVID-19 Advisory Board
BIDEN-HARRIS TRANSITION The President-Elect The Vice President-Elect Priorities Transition Español NOVEMBER 09, 2020 PRESS RELEASES Biden-Harris Transition Announces COVID-19 Advisory Board Leading Public Health and Scientific Experts to Advise the Transition on COVID-19 Response WASHINGTON – Today, the Biden-Harris Transition announced the formation of the Transition COVID-19 Advisory Board, a team of leading public health experts who will advise President-elect Biden, Vice President-elect Harris, and the Transition’s COVID-19 staff. The Transition COVID-19 Advisory Board will be led by co-chairs Dr. David Kessler, Dr. Vivek Murthy, and Dr. Marcella Nunez-Smith. Dr. Beth Cameron and Dr. Rebecca Katz are serving as advisors to the Transition on COVID-19 and will work closely with the Advisory Board. “Dealing with the coronavirus pandemic is one of the most important battles our administration will face, and I will be informed by science and by experts,” said President-elect Biden. “The advisory board will help shape my approach to managing the surge in reported infections; ensuring vaccines are safe, effective, and distributed efficiently, equitably, and free; and protecting at-risk populations.” New cases are rising in at least 40 states, with more than 9.3 million total infections and more than 236,000 deaths. President-elect Biden has pledged to bring leadership to the COVID pandemic, which continues to claim thousands of lives each week, by curbing the spread of the disease, providing free treatment to those in need, and elevating the voices of scientists and public health experts. The COVID-19 Advisory Board will help guide the Biden-Harris Transition in planning for the President-elect’s robust federal response. -
Fournier's Gangrene Caused by Listeria Monocytogenes As
CASE REPORT Fournier’s gangrene caused by Listeria monocytogenes as the primary organism Sayaka Asahata MD1, Yuji Hirai MD PhD1, Yusuke Ainoda MD PhD1, Takahiro Fujita MD1, Yumiko Okada DVM PhD2, Ken Kikuchi MD PhD1 S Asahata, Y Hirai, Y Ainoda, T Fujita, Y Okada, K Kikuchi. Une gangrène de Fournier causée par le Listeria Fournier’s gangrene caused by Listeria monocytogenes as the monocytogenes comme organisme primaire primary organism. Can J Infect Dis Med Microbiol 2015;26(1):44-46. Un homme de 70 ans ayant des antécédents de cancer de la langue s’est présenté avec une gangrène de Fournier causée par un Listeria A 70-year-old man with a history of tongue cancer presented with monocytogenes de sérotype 4b. Le débridement chirurgical a révélé un Fournier’s gangrene caused by Listeria monocytogenes serotype 4b. adénocarcinome rectal non diagnostiqué. Le patient n’avait pas Surgical debridement revealed undiagnosed rectal adenocarcinoma. d’antécédents alimentaires ou de voyage apparents, mais a déclaré The patient did not have an apparent dietary or travel history but consommer des sashimis (poisson cru) tous les jours. reported daily consumption of sashimi (raw fish). L’âge avancé et l’immunodéficience causée par l’adénocarcinome rec- Old age and immunodeficiency due to rectal adenocarcinoma may tal ont peut-être favorisé l’invasion directe du L monocytogenes par la have supported the direct invasion of L monocytogenes from the tumeur. Il s’agit du premier cas déclaré de gangrène de Fournier tumour. The present article describes the first reported case of attribuable au L monocytogenes. Les auteurs proposent d’inclure la con- Fournier’s gangrene caused by L monocytogenes. -
Diagnostic Code Descriptions (ICD9)
INFECTIONS AND PARASITIC DISEASES INTESTINAL AND INFECTIOUS DISEASES (001 – 009.3) 001 CHOLERA 001.0 DUE TO VIBRIO CHOLERAE 001.1 DUE TO VIBRIO CHOLERAE EL TOR 001.9 UNSPECIFIED 002 TYPHOID AND PARATYPHOID FEVERS 002.0 TYPHOID FEVER 002.1 PARATYPHOID FEVER 'A' 002.2 PARATYPHOID FEVER 'B' 002.3 PARATYPHOID FEVER 'C' 002.9 PARATYPHOID FEVER, UNSPECIFIED 003 OTHER SALMONELLA INFECTIONS 003.0 SALMONELLA GASTROENTERITIS 003.1 SALMONELLA SEPTICAEMIA 003.2 LOCALIZED SALMONELLA INFECTIONS 003.8 OTHER 003.9 UNSPECIFIED 004 SHIGELLOSIS 004.0 SHIGELLA DYSENTERIAE 004.1 SHIGELLA FLEXNERI 004.2 SHIGELLA BOYDII 004.3 SHIGELLA SONNEI 004.8 OTHER 004.9 UNSPECIFIED 005 OTHER FOOD POISONING (BACTERIAL) 005.0 STAPHYLOCOCCAL FOOD POISONING 005.1 BOTULISM 005.2 FOOD POISONING DUE TO CLOSTRIDIUM PERFRINGENS (CL.WELCHII) 005.3 FOOD POISONING DUE TO OTHER CLOSTRIDIA 005.4 FOOD POISONING DUE TO VIBRIO PARAHAEMOLYTICUS 005.8 OTHER BACTERIAL FOOD POISONING 005.9 FOOD POISONING, UNSPECIFIED 006 AMOEBIASIS 006.0 ACUTE AMOEBIC DYSENTERY WITHOUT MENTION OF ABSCESS 006.1 CHRONIC INTESTINAL AMOEBIASIS WITHOUT MENTION OF ABSCESS 006.2 AMOEBIC NONDYSENTERIC COLITIS 006.3 AMOEBIC LIVER ABSCESS 006.4 AMOEBIC LUNG ABSCESS 006.5 AMOEBIC BRAIN ABSCESS 006.6 AMOEBIC SKIN ULCERATION 006.8 AMOEBIC INFECTION OF OTHER SITES 006.9 AMOEBIASIS, UNSPECIFIED 007 OTHER PROTOZOAL INTESTINAL DISEASES 007.0 BALANTIDIASIS 007.1 GIARDIASIS 007.2 COCCIDIOSIS 007.3 INTESTINAL TRICHOMONIASIS 007.8 OTHER PROTOZOAL INTESTINAL DISEASES 007.9 UNSPECIFIED 008 INTESTINAL INFECTIONS DUE TO OTHER ORGANISMS -
Ehrlichiosis and Anaplasmosis Are Tick-Borne Diseases Caused by Obligate Anaplasmosis: Intracellular Bacteria in the Genera Ehrlichia and Anaplasma
Ehrlichiosis and Importance Ehrlichiosis and anaplasmosis are tick-borne diseases caused by obligate Anaplasmosis: intracellular bacteria in the genera Ehrlichia and Anaplasma. These organisms are widespread in nature; the reservoir hosts include numerous wild animals, as well as Zoonotic Species some domesticated species. For many years, Ehrlichia and Anaplasma species have been known to cause illness in pets and livestock. The consequences of exposure vary Canine Monocytic Ehrlichiosis, from asymptomatic infections to severe, potentially fatal illness. Some organisms Canine Hemorrhagic Fever, have also been recognized as human pathogens since the 1980s and 1990s. Tropical Canine Pancytopenia, Etiology Tracker Dog Disease, Ehrlichiosis and anaplasmosis are caused by members of the genera Ehrlichia Canine Tick Typhus, and Anaplasma, respectively. Both genera contain small, pleomorphic, Gram negative, Nairobi Bleeding Disorder, obligate intracellular organisms, and belong to the family Anaplasmataceae, order Canine Granulocytic Ehrlichiosis, Rickettsiales. They are classified as α-proteobacteria. A number of Ehrlichia and Canine Granulocytic Anaplasmosis, Anaplasma species affect animals. A limited number of these organisms have also Equine Granulocytic Ehrlichiosis, been identified in people. Equine Granulocytic Anaplasmosis, Recent changes in taxonomy can make the nomenclature of the Anaplasmataceae Tick-borne Fever, and their diseases somewhat confusing. At one time, ehrlichiosis was a group of Pasture Fever, diseases caused by organisms that mostly replicated in membrane-bound cytoplasmic Human Monocytic Ehrlichiosis, vacuoles of leukocytes, and belonged to the genus Ehrlichia, tribe Ehrlichieae and Human Granulocytic Anaplasmosis, family Rickettsiaceae. The names of the diseases were often based on the host Human Granulocytic Ehrlichiosis, species, together with type of leukocyte most often infected. -
Establishment of Listeria Monocytogenes in the Gastrointestinal Tract
microorganisms Review Establishment of Listeria monocytogenes in the Gastrointestinal Tract Morgan L. Davis 1, Steven C. Ricke 1 and Janet R. Donaldson 2,* 1 Center for Food Safety, Department of Food Science, University of Arkansas, Fayetteville, AR 72704, USA; [email protected] (M.L.D.); [email protected] (S.C.R.) 2 Department of Cell and Molecular Biology, The University of Southern Mississippi, Hattiesburg, MS 39406, USA * Correspondence: [email protected]; Tel.: +1-601-266-6795 Received: 5 February 2019; Accepted: 5 March 2019; Published: 10 March 2019 Abstract: Listeria monocytogenes is a Gram positive foodborne pathogen that can colonize the gastrointestinal tract of a number of hosts, including humans. These environments contain numerous stressors such as bile, low oxygen and acidic pH, which may impact the level of colonization and persistence of this organism within the GI tract. The ability of L. monocytogenes to establish infections and colonize the gastrointestinal tract is directly related to its ability to overcome these stressors, which is mediated by the efficient expression of several stress response mechanisms during its passage. This review will focus upon how and when this occurs and how this impacts the outcome of foodborne disease. Keywords: bile; Listeria; oxygen availability; pathogenic potential; gastrointestinal tract 1. Introduction Foodborne pathogens account for nearly 6.5 to 33 million illnesses and 9000 deaths each year in the United States [1]. There are over 40 pathogens that can cause foodborne disease. The six most common foodborne pathogens are Salmonella, Campylobacter jejuni, Escherichia coli O157:H7, Listeria monocytogenes, Staphylococcus aureus, and Clostridium perfringens. -
Listeriosis (“Circling Disease”) Extended Version
Zuku Review FlashNotesTM Listeriosis (“circling disease”) Extended Version Classic case: Silage-fed adult cow, head tilt, circling, asymmetric sensation loss on face Presentation: Signalment and History Adult cattle, sheep, goats, (possibly camelids) . Indoors in winter with feeding of silage . Extremely rare in horses Poultry and pet birds Human listeria outbreaks Clinical signs (mammals) Head tilt Circling Dullness Sensory and motor dysfunction of trigeminal nerve . Asymmetric sensory loss on face . Weak jaw closure Purulent ophthalmitis Exposure keratitis Isolation from rest of herd Ocular and nasal discharge Listeriosis in a Holstein. Food remaining in mouth Note the head tilt and drooped ear Bloat Marked somnolence Tetraparesis, ataxia Poor to absent palpebral reflexes Difficulty swallowing/poor gag reflex Tongue paresis Obtundation, semicoma, death Clinical signs (avian listeriosis) Often subclinical Older birds and poultry (septicemia) . Depression, lethargy . Sudden death Younger birds and poultry (chronic form) . Torticollis . Paresis/paralysis DDX: Listeriosis in an ataxic goat Mammals Brainstem abscess, basilar empyema, otitis media/interna, Maedi-Visna, rabies, caprine arthritis-encephalitis, Parelaphostrongylus tenuis, scrapie Avian Colibacillosis, pasteurellosis, erysipelas, velogenic viscerotropic Newcastle disease 1 Zuku Review FlashNotesTM Listeriosis (“circling disease”) Extended Version Test(s) of choice: Mammals-Clinical signs and Cerebrospinal fluid (CSF) analysis . Mononuclear pleocytosis, -
Affidavit from Michael Osterholm
27-CR-20-12951 Filed in District Court State of Minnesota 1/19/2021 3:22 PM STATE OF MINNESOTA DISTRICT COURT COUNTY OF HENNEPIN FOURTH JUDICIAL DISTRICT State of Minnesota, AFFIDAVIT OF MICHAEL T. OSTERHOLM, Ph.D., MPH Plaintiff, V. Derek Michael Chauvin, Court File No.2 27-CR-20-12646 J. Alexander Kueng, Court File No.2 27-CR—20-12953 Thomas Kiernan Lane, Court File No.2 27-CR-20-12951 Tou Thao, Court File No.: 27-CR-20-12949 Defendants. TO: The Honorable Peter Cahill, Judge of District Court, and counsel for Defendants; Eric J. Nelson, Halberg Criminal Defense, 7900 Xerxes Avenue South, Suite 1700, Bloomington, MN 55431; Robert Paule, 920 Second Avenue South, Suite 975, Minneapolis, MN 55402; Earl Gray, 1st Bank Building, 332 Minnesota Street, Suite W1610, St. Paul, MN 55101; Thomas Plunkett, U.S. Bank Center, 101 East Fifth Street, Suite 1500, St. Paul, MN 55101. MICHAEL T. OSTERHOLM, being duly sworn under oath, states as follows: Background and Qualifications 1. My name is Michael Osterholm, and I am an epidemiologist and the director of the Center for Infectious Disease Research and Policy at the University of Minnesota. 2. I am currently a Regents Professor, McKnight Presidential Endowed Chair in Public Health, Distinguished Teaching Professor in the Division of Environmental Health Sciences in the School of Public Health, a professor in the Technological Leadership Institute, and an adjunct professor in the Medical School, all at the University of Minnesota. 27-CR-20-12951 Filed in District Court State of Minnesota 1/19/2021 3:22 PM On November 9, 2020, President-elect Joseph Biden named me to be one of the sixteen members of his Coronavirus Advisory Board. -
COI Estimates of Listeriosis
COI Estimates of Listeriosis women, newborn/fetal cases, and other adults (i.e., adults who are not pregnant women)(Roberts and Listeriosis is the disease caused by the infectious bac- Pinner 1990). Listeriosis in pregnant women is usual- terium, Listeria monocytogenes. Listeriosis may have ly relatively mild and may be manifested as a flu-like a bimodal distribution of severity with most cases syndrome or placental infection. They are hospital- being either mild or severe (CAST 1994, p. 51). ized for observation. Because of data limitations, the Milder cases of listeriosis are characterized by a sud- less severe cases are not considered here. den onset of fever, severe headache, vomiting, and other influenza-type symptoms. Reported cases of lis- Infected pregnant women can transmit the disease to teriosis are often manifested as septicemia and/or their newborns/fetuses either before or during deliv- meningoencephalitis and may also involve delirium ery. Infected newborns/fetuses may be stillborn, and coma (Benenson 1990, p. 250). Listeriosis may develop meningitis (inflammation of the tissue sur- cause premature death in fetuses, newborns, and some rounding the brain and/or spinal cord) in the neonatal adults or cause developmental complications for fetus- period, or are born with septicemia (syndrome of es and newborns. decreased blood pressure and capillary leakage) (Benenson 1990, p. 250).74 Septicemia and meningi- Listeria can grow at refrigeration temperatures (CAST tis can both be serious and life-threatening. A portion 1994, p. 32; Pinner et al. 1992, p. 2049). There is no of babies with meningitis will go on to develop chron- consensus as to the infectious dose of Listeria, though ic neurological complications. -
Listeria Monocytogenes in Fresh Fruits and Vegetables Master's
Listeria monocytogenes in Fresh Fruits and Vegetables Master’s degree in Agriculture and Life Science By Alicia L. Thomas Introduction Approximately 1600 illnesses and 260 deaths in the United States are caused by food contaminated with Listeria monocytogenes (CDC, 2014; Scallan, et al, 2011). Listeria monocytogenes is a Gram-positive bacterium (Vaquez- Boland, Kuhn et al, 2011) that causes the infection listeriosis within the body. L. monocytogenes can be found in ready to eat (RTE) foods. Unlike other foodborne pathogens, one of the organisms unique characteristics is that it is a psychrotroph, meaning it can grow in refrigeration temperatures; therefore, refrigeration is not the most effective way to control the pathogens growth (figure 1) (Frazer, 1998), even when temperatures almost reach freezing. Figure 1. Temperature growth ranges for select foodborne pathogens Microorganism Growth Range (oF) Salmonella sp 41.4oF – 115.2oF Clostridium botulinum A&B 50.0oF – 118.4oF Clostridium botulinum Non-proteolytic B 37.9oF – 113.0oF Clostridium botulinum E 37.9oF – 113.0oF Clostridium botulinum F 37.9oF – 113.0oF Staphylococcus aureus 44.6oF – 122.0oF Yersinia enterocolytica 29.7oF – 107.6oF Listeria monocytogenes 31.3oF – 113.0oF Vibrio cholerae 01 50.0oF – 109.4oF Vibrio parahaemolyticus 41.0oF – 111.0oF Clostridium perfringens 50.0oF – 125.6oF Bacillus cereus 39.2oF – 131.0oF Escherichia coli (pathogenic types) 44.6oF – 120.9oF Shigella spp. 43.0oF – 116.8oF Frazer, A. M., 1998: Control by Refrigeration and Freezing The infection listeriosis, can affect people of all ages, but predominantly present in those with weakened immune systems such as pregnant women, newborns and those who are elderly (CDC, 2014). -
The CIDRAP Viewpoint COVID-19: the CIDRAP Viewpoint June 2, 2020
COVID-19: The CIDRAP Viewpoint COVID-19: The CIDRAP Viewpoint June 2, 2020 Part 4: Contact tracing for COVID-19: Assessing needs, using a tailored approach Kristine Moore, MD, MPH Jill DeBoer, MPH Richard Hoffman, MD, MPH Patrick McConnon, MPH Dale Morse, MD, MS Michael Osterholm, PhD, MPH Reviewed by Jeffery Duchin, MD Dr. Moore is medical director of CIDRAP, and Ms. DeBoer is CIDRAP deputy director. Dr. Hoffman is adjunct associate professor, Colorado School of Public Health. Mr. McConnon is board chair, CSTE Foundation. Dr. Morse is adjunct professor, Hubert Department of Global Health, Rollins School of Public Health, Emory University. Dr. Osterholm is director of CIDRAP, University of Minnesota Regents Professor, and McKnight Presidential Endowed Chair in Public Health. Dr. Duchin is health officer and chief of communicable disease epidemiology and immunization for Public Health Seattle–King County. CIDRAP, founded in 2001, is a global leader in addressing public health preparedness and emerging infectious disease response. Part of the Office of the Vice President for Research (OVPR) at the University of Minnesota, CIDRAP works to prevent illness and death from targeted infectious disease threats through research and the translation of scientific information into real-world, practical applications, policies, and solutions. For more information, visit: www.cidrap.umn.edu. COVID-19 Viewpoint reports are made possible with support from the University of Minnesota OVPR and the Bentson Foundation. COVID-19: The CIDRAP Viewpoint working group: Michael Osterholm, PhD, MPH, CIDRAP director Kristine Moore, MD, MPH, CIDRAP medical director Julie Ostrowsky, MSc, CIDRAP research associate James Seifert, JD, MS, MPH, CIDRAP program manager Angela Ulrich, PhD, MPH, CIDRAP research associate Alison Kraigsley, PhD, MS, CIDRAP research associate Maya Peters, MPH, CIDRAP program analyst Jim Wappes, CIDRAP editorial director Editing: Jim Wappes; Report layout: Maya Peters; Report & cover Design: Hannah Winesburg © 2020 Regents of the University of Minnesota. -
Investigation of Swabs from Skin and Superficial Soft Tissue Infections
UK Standards for Microbiology Investigations Investigation of swabs from skin and superficial soft tissue infections Issued by the Standards Unit, Microbiology Services, PHE Bacteriology | B 11 | Issue no: 6.5 | Issue date: 19.12.18 | Page: 1 of 37 © Crown copyright 2018 Investigation of swabs from skin and superficial soft tissue infections Acknowledgments UK Standards for Microbiology Investigations (SMIs) are developed under the auspices of Public Health England (PHE) working in partnership with the National Health Service (NHS), Public Health Wales and with the professional organisations whose logos are displayed below and listed on the website https://www.gov.uk/uk- standards-for-microbiology-investigations-smi-quality-and-consistency-in-clinical- laboratories. SMIs are developed, reviewed and revised by various working groups which are overseen by a steering committee (see https://www.gov.uk/government/groups/standards-for-microbiology-investigations- steering-committee). The contributions of many individuals in clinical, specialist and reference laboratories who have provided information and comments during the development of this document are acknowledged. We are grateful to the medical editors for editing the medical content. For further information please contact us at: Standards Unit Microbiology Services Public Health England 61 Colindale Avenue London NW9 5EQ E-mail: [email protected] Website: https://www.gov.uk/uk-standards-for-microbiology-investigations-smi-quality- and-consistency-in-clinical-laboratories PHE publications gateway number: 2016056 UK Standards for Microbiology Investigations are produced in association with: Logos correct at time of publishing. Bacteriology | B 11 | Issue no: 6.5 | Issue date: 19.12.18 | Page: 2 of 37 UK Standards for Microbiology Investigations | Issued by the Standards Unit, Public Health England Investigation of swabs from skin and superficial soft tissue infections Contents Acknowledgments ................................................................................................................