Dietary Cholesterol Drives Fatty Liver-Associated Liver Cancer By

Total Page:16

File Type:pdf, Size:1020Kb

Dietary Cholesterol Drives Fatty Liver-Associated Liver Cancer By Hepatology ORIGINAL RESEARCH Dietary cholesterol drives fatty liver- associated liver Gut: first published as 10.1136/gutjnl-2019-319664 on 21 July 2020. Downloaded from cancer by modulating gut microbiota and metabolites Xiang Zhang,1 Olabisi Oluwabukola Coker,1 Eagle SH Chu,1 Kaili Fu,1 Harry C H Lau ,1 Yi- Xiang Wang,2 Anthony W H Chan,3 Hong Wei,4,5 Xiaoyong Yang,6 Joseph J Y Sung,1 Jun Yu 1 ► Additional material is ABSTRACT Significance of this study published online only. To view Objective Non- alcoholic fatty liver disease (NAFLD)- please visit the journal online associated hepatocellular carcinoma (HCC) is an (http:// dx. doi. org/ 10. 1136/ What is already known on this subject? gutjnl- 2019- 319664). increasing healthcare burden worldwide. We examined the role of dietary cholesterol in driving NAFLD–HCC ► Non- alcoholic fatty liver disease (NAFLD)- For numbered affiliations see associated hepatocellular carcinoma (HCC) is end of article. through modulating gut microbiota and its metabolites. Design High-fat/high- cholesterol (HFHC), high- fat/ an increasing healthcare burden worldwide. ► Cholesterol is a major lipotoxic molecule. Correspondence to low- cholesterol or normal chow diet was fed to C57BL/6 Jun Yu, Institute of Digestive male littermates for 14 months. Cholesterol-lowering What are the new findings? Disease and The Department drug atorvastatin was administered to HFHC- fed mice. ► High- fat high- cholesterol diet (HFHC) of Medicine and Therapeutics, Germ-free mice were transplanted with stools from Chinese University of Hong spontaneously and sequentially induced fatty Kong, New Territories, Hong mice fed different diets to determine the direct role liver, steatohepatitis, fibrosis and NAFLD–HCC Kong; junyu@ cuhk. edu. hk of cholesterol modulated- microbiota in NAFLD–HCC. development, while high- fat low- cholesterol Gut microbiota was analysed by 16S rRNA sequencing diet induced only hepatic steatosis in male XZ and OOC are co-first authors. and serum metabolites by liquid chromatography– mice. mass spectrometry (LC–MS) metabolomic analysis. Received 19 August 2019 ► Dietary cholesterol- induced NAFLD–HCC Revised 4 June 2020 Faecal microbial compositions were examined in 59 formation was associated with gut microbiota Accepted 15 June 2020 hypercholesterolemia patients and 39 healthy controls. dysbiosis. The microbiota composition changed Results High dietary cholesterol led to the sequential along stages of NAFLD–HCC formation: progression of steatosis, steatohepatitis, fibrosis and Mucispirillum, Desulfovibrio, Anaerotruncus http://gut.bmj.com/ eventually HCC in mice, concomitant with insulin and Desulfovibrionaceae were sequentially resistance. Cholesterol- induced NAFLD–HCC formation increased; while Bifidobacterium and was associated with gut microbiota dysbiosis. The Bacteroides were depleted in HFHC- fed microbiota composition clustered distinctly along stages mice, which was corroborated in human of steatosis, steatohepatitis and HCC. Mucispirillum, hypercholesteremia patients. Desulfovibrio, Anaerotruncus and Desulfovibrionaceae ► Gut bacterial metabolites alteration including increased sequentially; while Bifidobacterium and increased serum taurocholic acid (TCA) on September 24, 2021 by guest. Protected copyright. Bacteroides were depleted in HFHC-fed mice, which was and depleted 3- indolepropionic acid (IPA) corroborated in human hypercholesteremia patients. was found in NAFLD–HCC. IPA inhibited Dietary cholesterol induced gut bacterial metabolites cholesterol- induced lipid accumulation and cell alteration including increased taurocholic acid and proliferation, while TCA aggravated cholesterol- decreased 3-indolepropionic acid. Germ-free mice induced triglyceride accumulation in human gavaged with stools from mice fed HFHC manifested normal immortalised hepatocyte cell line. hepatic lipid accumulation, inflammation and cell ► Germ- free mice gavaged with stools from proliferation. Moreover, atorvastatin restored cholesterol- HFHC- fed mice manifested hepatic lipid induced gut microbiota dysbiosis and completely accumulation, inflammation and cell prevented NAFLD–HCC development. proliferation, in consistence with donor mice Conclusions Dietary cholesterol drives NAFLD–HCC phenomes. formation by inducing alteration of gut microbiota and ► Anticholesterol treatment restored dietary metabolites in mice. Cholesterol inhibitory therapy and © Author(s) (or their cholesterol- induced gut microbiota dysbiosis employer(s)) 2020. Re- use gut microbiota manipulation may be effective strategies and completely prevented NAFLD–HCC permitted under CC BY- NC. No for NAFLD–HCC prevention. formation. commercial re- use. See rights and permissions. Published How might it impact on clinical practice in the by BMJ. foreseeable future? INTRODUCTION Our findings indicate that anticholesterol drug To cite: Zhang X, Coker OO, Non- alcoholic fatty liver disease (NAFLD) is the ► Chu ESH, et al. Gut Epub and manipulation of the gut microbiota might hepatic manifestation of metabolic syndrome, ahead of print: [please represent effective strategies in preventing include Day Month Year]. which encompasses a spectrum of liver pathologies NAFLD–HCC. doi:10.1136/ that range from simple steatosis to non- alcoholic gutjnl-2019-319664 steatohepatitis (NASH).1 NASH can progress to Zhang X, et al. Gut 2020;0:1–14. doi:10.1136/gutjnl-2019-319664 1 Hepatology hepatic cirrhosis, end- stage liver failure and hepatocellular carci- stored at −80°C for further experiments. Mice stool samples noma (HCC).2 Currently, NAFLD is a major cause of morbidity were collected for bacterial 16S rRNA gene sequencing and oral and a healthcare burden worldwide. Large population-based gavage. Gut: first published as 10.1136/gutjnl-2019-319664 on 21 July 2020. Downloaded from cohort studies demonstrate that the prevalence of NAFLD–HCC C57BL/6 male germ- free mice (7 weeks) were bred at the has increased by fourfold in the last decade compared with 2.5- Department of Laboratory Animal Science at the Third Military fold for hepatitis, making it the most rapidly growing indication Medical University in Chongqing, China. Adult mice (8 weeks for liver transplantation.3 Lipotoxicity drives the progression of old) were divided into three groups (11–28 mice per group), NASH, fibrosis/cirrhosis, and even HCC.4 Among hepatic lipid and gavaged twice at 0 and 7 months with stools obtained from species, cholesterol is considered a major lipotoxic molecule conventional mice fed with NC, HFLC, HFHC or HFHC mice in NASH development.4 The liver is central to the regulation treated with atorvastatin for 14 months. Briefly, 1 g of stool of systemic cholesterol homeostasis. Abnormalities in hepatic samples were homogenised in 5 mL of phosphate buffered saline cholesterol homeostasis have been demonstrated in both human (PBS). Recipient mice were then transplanted with 200 μL of and experimental models of NASH.5 6 We have revealed that the suspension by gastric gavage. Mice from each group were squalene epoxidase, a rate- limiting enzyme in cholesterol biosyn- randomly selected and sacrificed at 8, 10 or 14 months following thesis, drives NAFLD–HCC development.7 Dietary cholesterol transplantation. has an important impact on plasma and hepatic cholesterol Additional methods are provided in online supplementary file homeostasis.5 Although the contribution of dietary cholesterol 1. to NASH progression has been reported,5 8 the role and patho- genic basis of long-term cholesterol treatment on spontaneous RESULTS and progressive NAFLD–HCC development are unknown. Dietary cholesterol drives the development of NAFLD–HCC The intestinal microbiota has a symbiotic relationship with spontaneously its host and contributes nutrients and energy by metabolising To examine the role of dietary cholesterol in the evolution of dietary components including cholesterol in the large intes- steatosis, NASH, fibrosis and subsequent NAFLD–HCC, mice tine.9 Several studies have suggested that the gut microbiome were fed with HFHC,17 HFLC or NC. Serum level of alpha- represents an environmental factor contributing to the devel- fetoprotein (AFP, marker for liver cancer) was monitored at opment of NAFLD and its progression to NAFLD–HCC.10 11 different time points (3, 8, 10, 12 and 14 months). An elevated Microbe- derived metabolites, such as bile acid, short- chain AFP level was observed at month 10 (107.1±127.9 ng/mL), fatty acids and trimethylamine and the signalling pathways they which was further increased at month 12 (151.6±129.3 ng/mL) affect may contribute to NAFLD development.12 13 In partic- and month 14 (174.2±203.1 ng/mL) in mice fed with HFHC ular, 3-(4- hydroxyphenyl) lactate, a metabolite derived from gut compared with HFLC (50.9±7.5 ng/mL in HFLC) or NC microbiome, has a shared gene‐effect with both hepatic steatosis (59.7±20.9 ng/mL) at month 14 (figure 1A). MRI scan showed and fibrosis.14 Moreover, the alteration of gut microbiota profile liver tumours in HFHC-fed mice but not in HFLC-fed or by dietary cholesterol has been reported.15 However, whether gut NC-fed mice at month 14 (figure 1B). Mice were then harvested microbiota dysbiosis is the cause or effect of dietary cholesterol- http://gut.bmj.com/ at month 14. Liver tumours were identified in 68% (13/19) of induced NASH and NAFLD–HCC progression remains unclear. mice fed with HFHC but not in mice fed with HFLC or NC diet The present study was performed to determine the role and (figure 1C). Histological examination of liver
Recommended publications
  • Phylogenetic Analysis of the Gut Bacterial Microflora of the Fungus-Growing Termite Macrotermes Barneyi
    African Journal of Microbiology Research Vol. 6(9), pp. 2071-2078, 9 March, 2012 Available online at http://www.academicjournals.org/AJMR DOI: 10.5897/AJMR11.1345 ISSN 1996-0808 ©2012 Academic Journals Full Length Research Paper Phylogenetic analysis of the gut bacterial microflora of the fungus-growing termite Macrotermes barneyi Yunhua Zhu1,2,3, Jian Li1,2, Huhu Liu1,2, Hui Yang1,2, Sheng Xin1,2, Fei Zhao1,2, Xuejia Zhang1,2, Yun Tian1,2* and Xiangyang Lu1,2* 1College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha 410128, China. 2Hunan Agricultural Bioengineering Research Institute, Changsha 410128, China. 3College of Pharmacy and Life Science, Nanhua University, Hengyang 421001, China. Accepted 29 December, 2011 Termites are an extremely successful group of wood-degrading organisms and are therefore important both for their roles in carbon turnover in the environment and as potential sources of biochemical catalysts for efforts aimed at converting wood into biofuels. To contribute to the evolutional study of termite digestive symbiosis, a bacterial 16S rRNA gene clone library from the gut microbial community of the fungus-growing termite Macrotermes barneyi was constructed. After screening by restriction fragment length polymorphism (RFLP) analysis, 25 out of 105 clones with unique RFLP patters were sequenced and phylogenetically analyzed. Many of the clones (95%) were derived from three phyla within the domain bacteria: Bacteroidetes, Firmicutes and Proteobacteria. In addition, a few clones derived from Deferribacteres, Actinobacteria and Planctomycetes were also found. No one clone affiliated with the phylum Spirochaetes was identified, in contrast to the case of wood-feeding termites. The phylogenetic analysis revealed that nearly half of the representative clones (11 phylotypes) formed monophyletic clusters with clones obtained from other termite species, especially with the sequences retrieved from fungus-growing termites.
    [Show full text]
  • Inhibition of Tumor Growth by Dietary Indole-3-Carbinol in a Prostate Cancer Xenograft Model May Be Associated with Disrupted Gut Microbial Interactions
    nutrients Article Inhibition of Tumor Growth by Dietary Indole-3-Carbinol in a Prostate Cancer Xenograft Model May Be Associated with Disrupted Gut Microbial Interactions Yanbei Wu 1,2,3, Robert W. Li 4, Haiqiu Huang 3 , Arnetta Fletcher 2,5, Lu Yu 2, Quynhchi Pham 3, Liangli Yu 2, Qiang He 1,* and Thomas T. Y. Wang 3,* 1 College of Light Industry, Textile and Food Engineering, Sichuan University, Chengdu 610065, China; [email protected] 2 Department of Nutrition and Food Science, University of Maryland, College Park, MD 20742, USA; afl[email protected] (A.F.); [email protected] (L.Y.); [email protected] (L.Y.) 3 Diet, Genomics, and Immunology Laboratory, Beltsville Human Nutrition Research Center, USDA-ARS, Beltsville, MD 20705, USA; [email protected] (H.H.); [email protected] (Q.P.) 4 Animal Parasitic Diseases Laboratory, USDA-ARS, Beltsville, MD 20705, USA; [email protected] 5 Department of Family and Consumer Sciences, Shepherd University, Shepherdstown, WV 25443, USA * Correspondence: [email protected] (Q.H.); [email protected] (T.T.Y.W.); Tel.: +86-28-85468323 (Q.H.); +(301)-504-8459 (T.T.Y.W.) Received: 2 January 2019; Accepted: 19 February 2019; Published: 22 February 2019 Abstract: Accumulated evidence suggests that the cruciferous vegetables-derived compound indole-3-carbinol (I3C) may protect against prostate cancer, but the precise mechanisms underlying its action remain unclear. This study aimed to verify the hypothesis that the beneficial effect of dietary I3C may be due to its modulatory effect on the gut microbiome of mice. Athymic nude mice (5–7 weeks old, male, Balb c/c nu/nu) with established tumor xenografts were fed a basal diet (AIN-93) with or without 1 µmoles I3C/g for 9 weeks.
    [Show full text]
  • Exploring the Role of Mucispirillum Schaedleri in Enteric Salmonella Enterica Serovar Typhimurium Infection
    Aus dem Max von Pettenkofer-Institut Lehrstuhl für Medizinische Mikrobiologie und Krankenhaushygiene der Ludwig-Maximilians-Universität München Vorstand: Prof. Dr. med. Sebastian Suerbaum Exploring the role of Mucispirillum schaedleri in enteric Salmonella enterica serovar Typhimurium infection Dissertation zum Erwerb des Doktorgrades der Naturwissenschaften an der Medizinischen Fakultät der Ludwig-Maximilians-Universität München vorgelegt von Simone Herp aus Offenburg 2018 Gedruckt mit Genehmigung der Medizinischen Fakultät der Ludwig-Maximilians-Universität München Betreuerin: Prof. Dr. Barbara Stecher-Letsch Zweitgutachterin: Prof. Dr. Gabriele Rieder Dekan: Prof. Dr. med. dent. Reinhard Hickel Tag der mündlichen Prüfung: 19.02.2019 i Eidesstattliche Erklärung Ich, Simone Herp, erkläre hiermit an Eides statt, dass ich die vorliegende Dissertation mit dem Thema: Exploring the role of Mucispirillum schaedleri in enteric Salmonella enterica serovar Typhimurium infection selbständig verfasst, mich außer der angegebenen keiner weiteren Hilfsmittel bedient und alle Erkenntnisse, die aus dem Schrifttum ganz oder annähernd übernommen sind, als solche kenntlich gemacht und nach ihrer Herkunft unter Bezeichnung der Fundstelle einzeln nachgewiesen habe. Ich erkläre des Weiteren, dass die hier vorgelegte Dissertation nicht in gleicher oder in ähnlicher Form bei einer anderen Stelle zur Erlangung eines akademischen Grades eingereicht wurde. München, den 07.03.2019 Simone Herp ii Table of Contents Table of Contents Table of Contents .......................................................................................................................
    [Show full text]
  • Comparison of Gut Microbiota of 96 Healthy Dogs by Individual Traits: Breed, Age, and Body Condition Score
    animals Article Comparison of Gut Microbiota of 96 Healthy Dogs by Individual Traits: Breed, Age, and Body Condition Score Inhwan You 1,2 and Min Jung Kim 1,2,* 1 Department of Research and Development, Mjbiogen Corp., 144 Gwangnaru-ro, Seongdong-gu, Seoul 14788, Korea; [email protected] 2 College of Veterinary Medicine, Seoul National University, Seoul 08826, Korea * Correspondence: [email protected] Simple Summary: The gut microbial ecosystem is affected by various factors such as lifestyle, environment, and disease. Although gut microbiota is closely related to host health, an understanding of the gut microbiota of dogs is still lacking. Therefore, we investigated gut microbial composition in healthy dogs and divided them into groups according to their breed, age, or body condition score. From our results, age is the most crucial factor driving the gut microbial community of dogs compared to breed and body condition score (especially Fusobacterium perfoetens, which was much more abundant in the older group). We have revealed that even in healthy dogs without any diseases, there are differences in gut microbiota depending on individual traits. These results can be used as a basis for improving the quality of life by managing dogs’ gut microbiota. Abstract: Since dogs are part of many peoples’ lives, research and industry related to their health and longevity are becoming a rising topic. Although gut microbiota (GM) is a key contributor to Citation: You, I.; Kim, M.J. host health, limited information is available for canines. Therefore, this study characterized GM Comparison of Gut Microbiota of 96 according to individual signatures (e.g., breed, age, and body condition score—BCS) of dogs living Healthy Dogs by Individual Traits: in the same environment.
    [Show full text]
  • Dietary Energy Level Affects the Composition of Cecal Microbiota of Starter Pekin Ducklings
    Original Paper Czech J. Anim. Sci., 63, 2018 (1): 24–31 doi: 10.17221/53/2017-CJAS Dietary Energy Level Affects the Composition of Cecal Microbiota of Starter Pekin Ducklings Jun-Qiang Liu1, Yan-Hong Wang1, Xing-Tang Fang1, Ming Xie3, Yun-Sheng Zhang3, Shui-Sheng Hou3, Hong Chen1, Guo-Hong Chen2, Chun-Lei Zhang1,2* 1Institute of Cellular and Molecular Biology, School of Life Sciences, Jiangsu Normal University, Xuzhou, P.R. China 2College of Animal Science and Technology, Yangzhou University, Yangzhou, P.R. China 3Institute of Animal Science, Chinese Academy of Agricultural Sciences, Beijing, P.R. China *Corresponding author: [email protected] ABSTRACT Liu J.-Q., Wang Y.-H., Fang X.-T., Xie M., Zhang Y.-S., Hou S.-S., Chen H., Chen G.-H., Zhang C.-L. (2018): Dietary energy level affects the composition of cecal microbiota of starter Pekin ducklings. Czech J. Anim. Sci., 63, 24–31. In this study, we evaluated the phylogenetic diversity of the cecal microbiota of 3-week-old ducklings fed three diets differing in metabolizable energy. The contents of the ceca were collected from ducklings of different groups. The ceca bacterial DNA was isolated and the V3 to V4 regions of 16S rRNA genes were amplified. The amplicons were subjected to high-throughput sequencing to analyze the bacterial diversity of different groups. The predominant bacterial phyla were Bacteroidetes (~65.67%), Firmicutes (~17.46%), and Proteobacteria (~10.73%). The abundance of Bacteroidetes increased and that of Firmicutes decreased with increasing dietary energy level. The diversity decreased (Simpson diversity index and Shannon diversity index) with the increase in dietary energy level, but the richness remained constant.
    [Show full text]
  • Distinct Microbial Communities in the Murine Gut Are Revealed by Taxonomy- 2 Independent Phylogenetic Random Forests 3 Gurdeep Singh1, Andrew Brass2, Sheena M
    bioRxiv preprint doi: https://doi.org/10.1101/790923; this version posted October 2, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Distinct microbial communities in the murine gut are revealed by taxonomy- 2 independent phylogenetic random forests 3 Gurdeep Singh1, Andrew Brass2, Sheena M. Cruickshank1, and Christopher G. Knight3. 4 5 1 Faculty of Biology, Medicine and Health, Lydia Becker Institute of Immunology and 6 Inflammation, Manchester Academic Health Science Centre, A.V. Hill Building, The 7 University of Manchester, Oxford Road, Manchester, M13 9PT, United Kingdom. 8 [email protected], [email protected] 9 10 2 Faculty of Biology, Medicine and Health, Division of Informatics, Imaging and Data 11 Sciences, Stopford Building, The University of Manchester, Oxford Road, Manchester, M13 12 9PT, United Kingdom. [email protected] 13 14 3 Faculty of Science and Engineering, School of Earth and Environmental Sciences, Michael 15 Smith Building, The University of Manchester, Oxford Road, Manchester, M13 9PT, United 16 Kingdom. [email protected] 17 Corresponding author: Sheena M. Cruickshank A.V. Hill Building The University of Manchester Oxford Road Manchester M13 9PT [email protected] Phone +44 (0) 161 275 1582 18 19 Running title: Phylogenetic mouse gut microbiomes 20 21 1 bioRxiv preprint doi: https://doi.org/10.1101/790923; this version posted October 2, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder.
    [Show full text]
  • Longitudinal Analysis of the Faecal Microbiome in Pigs Fed Cyberlindnera Jadinii Yeast As a Protein Source During the Weanling P
    bioRxiv preprint doi: https://doi.org/10.1101/2021.02.11.430725; this version posted February 11, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Longitudinal analysis of the faecal microbiome in pigs fed Cyberlindnera jadinii yeast as a protein source during the weanling period followed by a rapeseed- and faba bean-based grower-finisher diet Iakhno, S.1,*, Delogu, F.2, Umu, O.C.O.¨ 1, Kjos, N.P.3, H˚aken˚asen,I.M.3, Mydland, L.T.3, Øverland, M.3 and Sørum, H.1 1 Faculty of Veterinary Medicine, Norwegian University of Life Sciences, Oslo, Norway 2 Luxembourg Centre for Systems Biomedicine, Universit´edu Luxembourg, L-4362 Esch-sur-Alzette, Luxembourg 3 Faculty of Biosciences, Norwegian University of Life Sciences, As,˚ Norway * [email protected] Abstract The porcine gut microbiome is closely connected to diet and is central to animal health and growth. The gut microbiota composition in relation to Cyberlindnera jadinii yeast as a protein source in a weanling diet was studied previously. Also, there is a mounting body of knowledge regarding the porcine gut microbiome composition in response to the use of rapeseed (Brassica napus subsp. napus) meal, and faba beans (Vicia faba) as protein sources during the growing/finishing period. However, there is limited data on how the porcine gut microbiome respond to a combination of C.
    [Show full text]
  • Investigation of Microbiota in Health and Disease of Poultry
    University of Arkansas, Fayetteville ScholarWorks@UARK Theses and Dissertations 8-2019 Investigation of Microbiota in Health and Disease of Poultry Bishnu Adhikari University of Arkansas, Fayetteville Follow this and additional works at: https://scholarworks.uark.edu/etd Part of the Animal Diseases Commons, Bacteriology Commons, Microbial Physiology Commons, Molecular Biology Commons, and the Poultry or Avian Science Commons Recommended Citation Adhikari, Bishnu, "Investigation of Microbiota in Health and Disease of Poultry" (2019). Theses and Dissertations. 3371. https://scholarworks.uark.edu/etd/3371 This Dissertation is brought to you for free and open access by ScholarWorks@UARK. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of ScholarWorks@UARK. For more information, please contact [email protected]. Investigation of Microbiota in Health and Disease of Poultry A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Poultry Science by Bishnu Adhikari Tribhuvan University Bachelor of Veterinary Science & Animal Husbandry, 2010 Aarhus University Master of Science in Sustainable Animal Nutrition and Feeding, 2015 University of Debrecen Master of Science in Sustainable Animal Nutrition Agricultural Engineer, 2015 August 2019 University of Arkansas The dissertation is approved for recommendation to the Graduate Council. Young Min Kwon, Ph.D. Dissertation Director Billy M. Hargis, Ph.D. Jiangchao Zhao, Ph.D. Committee Member Committee Member Guillermo Tellez-Isaias, Ph.D. Committee Member ABSTRACT The microbiotas play vital roles in health and diseases of both humans and animals. 16S rRNA genes sequence analysis is one of the most popular and commonly used methods in the analysis of microbiotas associated with hosts.
    [Show full text]
  • Exploring the Ecology of Complex Microbial Communities Through
    EXPLORING THE ECOLOGY OF COMPLEX MICROBIAL COMMUNITIES THROUGH THE COCKROACH GUT MICROBIOME by KARA ANN TINKER (Under the Direction of Elizabeth A. Ottesen) ABSTRACT Microbes represent the majority of biomass and diversity found on planet earth and are essential to the maintenance of global biochemical processes. However, there is still much that is unknown about what drives the formation and maintenance of complex microbial communities. Here, we explore the ecology of complex microbial communities through an examination of the cockroach gut microbiome. The cockroach gut microbiota is highly complex and is analogous to the human gut microbiome in structure, function, and overall diversity. Insects in the superorder Dictyoptera include: carnivorous praying mantids, omnivorous cockroaches, and herbivorous termites. We use 16S rRNA amplicon sequencing to survey the structure and diversity across of gut microbiota 237 cockroaches in the Blattodea order. Results show that host species plays a key role in the gut microbiota of cockroaches. This suggests that cockroach host-microbe coevolution preceded the emergence and possibly facilitated the dietary specialization of termites. Previous work suggests that diet is plays an important role in shaping the Blattodea gut microbiome. We conducted a series of dietary perturbations to determine the effect of diet on the structure of the cockroach gut microbiome. We found the cockroach hosts a taxonomically stable gut microbiome, which may aid the host in survival during low-food and/or starvation events. This stability is highly unusual and has not been found in any other animal that hosts a complex gut microbial community. This suggests that cockroaches have evolved unique mechanisms for establishing and maintaining a diverse and stable core microbiome.
    [Show full text]
  • Disentangling the Relative Roles of Vertical Transmission, Subsequent
    bioRxiv preprint doi: https://doi.org/10.1101/2020.07.01.183558; this version posted July 3, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Disentangling the relative roles of vertical transmission, subsequent 2 colonizations and diet on cockroach microbiome assembly 3 4 Kristjan Germer1*, Justinn Renelies-Hamilton1*, David Sillam-Dussès2, Kasun H. Bodawatta3 5 and Michael Poulsen1 6 7 8 Running title: Gut microbial community assembly in cockroaches 9 10 11 1Section for Ecology and Evolution, Department of Biology, University of Copenhagen, 12 Copenhagen, Denmark 13 14 2Université Sorbonne Paris Nord, Laboratoire d'Ethologie Expérimentale et Comparée 15 UR4443, Villetaneuse, France. 16 17 3Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark 18 19 *Contributed equally to this work 20 21 22 Corresponding author: Michael Poulsen: [email protected], +45 35330377 23 24 25 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.07.01.183558; this version posted July 3, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 26 Abstract 27 A multitude of factors affect the assemblies of complex microbial communities associated 28 with animal hosts, with implications for community flexibility, resilience and long-term 29 stability; however, their relative effects have rarely been deduced. Here, we use a tractable 30 lab model to quantify the relative and combined effects of parental transmission (egg case 31 microbiome present/reduced), gut inocula (cockroach vs.
    [Show full text]
  • An Ensemble Approach to the Taxonomic Classification of Metatranscriptomic Sequence Data
    bioRxiv preprint doi: https://doi.org/10.1101/081026; this version posted October 28, 2016. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Gist – an ensemble approach to the taxonomic classification of metatranscriptomic sequence data. Samantha Halliday1,2 and John Parkinson1,3,4,* 1 Program in Molecular Structure and Function, Hospital for Sick Children, Toronto, Ontario, M5G 1L7, Canada 2 Department of Computer Science, University of Toronto, Toronto, Ontario, M5S 1A8, Canada 3 Department of Molecular Genetics, University of Toronto, Toronto, Ontario, M5S 1A8, Canada 4 Department of Biochemistry, University of Toronto, Toronto, Ontario, M5S 1A8, Canada * To whom correspondence should be addressed: [email protected] Running Title: Taxonomic classification of metatranscriptomic data Keywords: metatranscriptomics, taxonomic classification, 1 bioRxiv preprint doi: https://doi.org/10.1101/081026; this version posted October 28, 2016. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. ABSTRACT The study of whole microbial communities through RNA-seq, or metatranscriptomics, offers a unique view of the relative levels of activity for different genes across a large number of species simultaneously. To make sense of these sequencing data, it is necessary to be able to as- sign both taxonomic and functional identities to each sequenced read. High-quality identifica- tions are important not only for community profiling, but to also ensure that functional assign- ments of sequence reads are correctly attributed to their source taxa.
    [Show full text]
  • Characterisation of the Turkey Microbiome Along the Gastrointestinal Tract of Growing Turkeys
    Characterisation of the turkey microbiome along the gastrointestinal tract of growing turkeys Wilkinson, T. J., Cowan, A. A., Vallin, H. E., Onime, L. A., Oyama, L. B., Cameron, S. J., ... Huws, S. (2017). Characterisation of the turkey microbiome along the gastrointestinal tract of growing turkeys. Frontiers in Microbiology, 8, [1089]. DOI: 10.3389/fmicb.2017.01089 Published in: Frontiers in Microbiology Document Version: Publisher's PDF, also known as Version of record Queen's University Belfast - Research Portal: Link to publication record in Queen's University Belfast Research Portal Publisher rights Copyright 2017 the authors. This is an open access article published under a Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution and reproduction in any medium, provided the author and source are cited. General rights Copyright for the publications made accessible via the Queen's University Belfast Research Portal is retained by the author(s) and / or other copyright owners and it is a condition of accessing these publications that users recognise and abide by the legal requirements associated with these rights. Take down policy The Research Portal is Queen's institutional repository that provides access to Queen's research output. Every effort has been made to ensure that content in the Research Portal does not infringe any person's rights, or applicable UK laws. If you discover content in the Research Portal that you believe breaches copyright or violates any law, please contact [email protected]. Download date:06. Nov. 2017 ORIGINAL RESEARCH published: 22 June 2017 doi: 10.3389/fmicb.2017.01089 Characterization of the Microbiome along the Gastrointestinal Tract of Growing Turkeys Toby J.
    [Show full text]