Structural and Functional Diversity of the Lectin Repertoire in Teleost fish: Relevance to Innate and Adaptive Immunity
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2010-2012년 어류표본사업에서 채집된 한국 남해 어류 종 목록 Fish
Original Article 한수지 48(4), 507-528, 2015 Korean J Fish Aquat Sci 48(4),507-528,2015 2010-2012년 어류표본사업에서 채집된 한국 남해 어류 종 목록 문대연*·정현경·명정구1·최정화2·권혁준·백진욱·홍성열3·김성용 국립해양생물자원관, 1한국해양과학기술원 생물연구본부, 2국립수산과학원 자원관리과, 3해양수산부 해양수산생명자원과 Fish Species Collected by the Fish Collection Project from the Southern Sea of Korea during 2010-2012 Dae Yeon Moon*, Hyeon Gyeong Jeong, Jung-Goo Myoung1, Jung Hwa Choi2, Hyuck Joon Kwun, Jin Wook Back, Sung Youl Hong3 and Seong Yong Kim National Marine Biodiversity Institute of Korea, Seocheon 33662, Korea 1Biological Oceanography and Marine Biology Division, Korea Institute of Ocean Science and Technology, Ansan 15627, Korea 2Resources Management Division, National Fisheries Research and Development Institute, Busan 46083, Korea 3Marine and Fisheries Bioresources Division, Ministry of Ocean and Fisheries, Sejong 30110, Korea The Fish Collection Project collected 356 fish species from the Southern Sea of Korea during 2010–2012, 55 more than previously collected. The fishes belonged to 3 classes, 29 orders and 128 families. The 5 dominant orders, Per- ciformes, Scorpaeniformes, Pleuronectiformes, Tetraodontiformes, and Clupeiformes, accounted for ~80% of the identified species. Additionally, 126 species were collected from the Southern Sea for the first time, while 85 species that had been found in previous collections were not seen. The species variety of fish in the Southern Sea may be influenced by its unique oceanographic conditions such as increased water temperatures in coastal areas, so regular surveys would assist our understanding of the fish community. We suggest that various collection methods, includ- ing diving, be used to collect fish species inhabiting rocky shore or deep-sea areas, where commercial fishing gear is difficult to deploy. -
On the Evolution of the Sghc1q Gene Family, with Bioinformatic and Transcriptional Case Studies in Zebrafish
UNIVERSITY OF CALIFORNIA, SAN DIEGO On the evolution of the sghC1q gene family, with bioinformatic and transcriptional case studies in zebrafish A dissertation submitted in partial satisfaction of the requirements for the degree Doctor of Philosophy in Marine Biology by Tristan Matthew Carland Committee in charge: Lena G. Gerwick, Chair Eric E. Allen Phillip A. Hastings Victor Nizet Victor D. Vacquier 2011 Copyright Tristan Matthew Carland, 2011 All rights reserved. The dissertation of Tristan Matthew Carland is ap- proved, and it is acceptable in quality and form for pub- lication on microfilm and electronically: Chair University of California, San Diego 2011 iii DEDICATION To my family and friends To my parents To my fiancee´ You are the makings of this life I can never thank you enough iv EPIGRAPH Computers are incredibly fast, accurate, and stupid. Human beings are incredibly slow, inaccurate, and brilliant. Together they are powerful beyond imagination. | A. Einstein All we have to decide is what to do with the time that is given to us. | J.R.R. Tolkein Enlightenment is man's release from his self-incurred tutelage. Tutelage is man's inability to make use of his understanding without direction from another. Self- incurred is this tutelage when its cause lies not in lack of reason but in lack of resolution and courage to use it without direction from another. Sapere aude! \Have courage to use your own reason!" | I. Kant v TABLE OF CONTENTS Signature Page . iii Dedication . iv Epigraph . .v Table of Contents . vi List of Figures . ix List of Tables . xii Acknowledgements . -
Fish Defenses: Immunology
3rd Proof_5-4-08 Fish Defenses 4th Proof_4-9-08 in CD Prelims.pmd 1 12/1/2008, 4:15 PM 3rd Proof_5-4-08 Fish Defenses Volume 1: Immunology Editors Giacomo Zaccone Department of Animal Biology and Marine Ecology University of Messina Messina, Italy J. Meseguer Department of Cell Biology University of Murcia Murcia, Spain A. García-Ayala Department of Cell Biology University of Murcia Murcia, Spain B.G. Kapoor Formerly Professor of Zoology The University of Jodhpur Jodhpur, India Science Publishers Enfield (NH) Jersey Plymouth Prelims.pmd 3 12/1/2008, 4:15 PM 3rd Proof_5-4-08 Science Publishers www.scipub.net 234 May Street Post Office Box 699 Enfield, New Hampshire 03748 United States of America General enquiries : [email protected] Editorial enquiries : [email protected] Sales enquiries : [email protected] Published by Science Publishers, Enfield, NH, USA An imprint of Edenbridge Ltd., British Channel Islands Printed in India © 2009 reserved ISBN 978-1-57808-327-5 Cover illustration: Reproduced from Chapter 1 by C.J. Secombes, J. Zou and S. Bird with kind permission of the authors. Library of Congress Cataloging-in-Publication Data Fish defenses/editors, Giacomo Zaccone ...[et al.]. v. cm. Includes bibliographical references. Contents: v. 1. Immunology ISBN 978-1-57808-327-5 (hardcover) 1. Fishes--Defenses. I. Zaccone, Giacomo. QL639.3.F578 2008 571.9'617--dc22 2008016632 All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted in any form or by any means, electronic, mechanical, photocopying or otherwise, without the prior permission of the publisher, in writing. -
Functional Characterization of OXYL, a Sghc1qdc Lacnac-Specific
marine drugs Article Functional Characterization of OXYL, A SghC1qDC LacNAc-specific Lectin from The Crinoid Feather Star Anneissia Japonica Imtiaj Hasan 1,2 , Marco Gerdol 3 , Yuki Fujii 4 and Yasuhiro Ozeki 1,* 1 Graduate School of NanoBio Sciences, Yokohama City University, 22-2 Seto, Kanazawa-ku, Yokohama 236-0027, Japan; [email protected] 2 Department of Biochemistry and Molecular Biology, Faculty of Science, University of Rajshahi, Rajshahi 6205, Bangladesh 3 Department of Life Sciences, University of Trieste, Via Licio Giorgieri 5, 34127 Trieste, Italy; [email protected] 4 Graduate School of Pharmaceutical Sciences, Nagasaki International University, 2825-7 Huis Ten Bosch, Sasebo, Nagasaki 859-3298, Japan; [email protected] * Correspondence: [email protected]; Tel.: +81-45-787-2221; Fax: +81-45-787-2413 Received: 29 January 2019; Accepted: 18 February 2019; Published: 25 February 2019 Abstract: We identified a lectin (carbohydrate-binding protein) belonging to the complement 1q(C1q) family in the feather star Anneissia japonica (a crinoid pertaining to the phylum Echinodermata). The combination of Edman degradation and bioinformatics sequence analysis characterized the primary structure of this novel lectin, named OXYL, as a secreted 158 amino acid-long globular head (sgh)C1q domain containing (C1qDC) protein. Comparative genomics analyses revealed that OXYL pertains to a family of intronless genes found with several paralogous copies in different crinoid species. Immunohistochemistry assays identified the tissues surrounding coelomic cavities and the arms as the main sites of production of OXYL. Glycan array confirmed that this lectin could quantitatively bind to type-2 N-acetyllactosamine (LacNAc: Galβ1-4GlcNAc), but not to type-1 LacNAc (Galβ1-3GlcNAc). -
The Evolutionary History of the Embiotocid Surfperch Radiation Based on Genome-Wide RAD Sequence Data ⇑ Gary Longo , Giacomo Bernardi
Molecular Phylogenetics and Evolution 88 (2015) 55–63 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev The evolutionary history of the embiotocid surfperch radiation based on genome-wide RAD sequence data ⇑ Gary Longo , Giacomo Bernardi Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA, USA article info abstract Article history: The radiation of surfperches (Embiotocidae) in the temperate North Pacific has been suggested to be the Received 19 December 2014 product of ecological competition and niche partitioning. Surfperches are a family of viviparous marine Revised 29 March 2015 fishes, which have been used to study multiple paternity, sperm competition, and population genetics. Accepted 31 March 2015 Phylogenetic inference is essential for interpreting the evolutionary context of embiotocid life history Available online 7 April 2015 traits and testing alternative scenarios, yet previous studies have yielded phylogenies with low support and incongruent topologies. Here we constructed reduced representation genomic libraries using restric- Keywords: tion-site associated DNA (RAD) sequence markers to infer phylogenetic relationships among all genera Evolutionary radiation and 22 out of 24 embiotocid species. Orthologous markers retained across 91% of sampled species, Embiotocidae Surfperches corresponding to 523 loci, yielded trees with the highest support values. Our results support a scenario RAD-seq where embiotocids first diverged into clades associated with sandy and reef habitats during the middle Phylogenetics Miocene (13–18 Mya) with subsequent invasions of novel habitats in the reef associated clade, and north- ern range expansion in the Northwest Pacific. The appearance of California kelp forests (Laminariales) in the late Miocene (8–15 Mya) correlates with further proliferation in the reef associated clade. -
A New Species of Peniculus (Copepoda: Siphonostomatoida) Parasitizing Mesopelagic Myctophid Fish: First Discovery of Colonization of the Genus in Deep Water
Parasite 25, 58 (2018) Ó S. Ohtsuka et al., published by EDP Sciences, 2018 https://doi.org/10.1051/parasite/2018057 urn:lsid:zoobank.org:pub:71DA2B2D-125C-4C63-8D85-448314B36322 Available online at: www.parasite-journal.org RESEARCH ARTICLE OPEN ACCESS A new species of Peniculus (Copepoda: Siphonostomatoida) parasitizing mesopelagic myctophid fish: first discovery of colonization of the genus in deep water Susumu Ohtsuka1,*, Jun Nishikawa2, and Geoffrey A. Boxshall3 1 Takehara Station, Seotuchi Field Science Center, Graduate School of Biosphere Science, Hiroshima University, 5-8-1 Minato-machi, Takehara, Hiroshima 725-0024, Japan 2 Department of Marine Biology, School of Marine Science and Technology, Tokai University, Orido, Shimizu, Shizuoka 424-8610, Japan 3 Life Sciences Department, The Natural History Museum, Cromwell Road, London SW7 5BD, United Kingdom Received 29 August 2018, Accepted 1 November 2018, Published online 26 November 2018 Abstract – Peniculus hokutoae n. sp. is described on the basis of an ovigerous adult female parasitizing the caudal fin of the myctophid fish Symbolophorus evermanni (Gilbert, 1905), collected from Suruga Bay, Japan. This is the first record of parasitism by this genus on mesopelagic myctophid fish. The new species is easily distinguished from other congeners in: (1) the presence of a conical process anterior to the rostrum; (2) the secondary elongation of the first pedigerous somite; (3) the incorporation of the third and fourth pedigerous somites into the trunk; (4) the unilobate maxillule bearing two unequal apical setae; (5) the lack of any processes on the first segment of the maxilla. Four mor- phological patterns of the cephalothorax, neck and anterior parts of the trunk can be found in the genus. -
Alien Parasites of Freshwater
Doctor Thesis Taxonomic studies on monogeneans parasitic on cyprinids and alien freshwater fishes in Japan Masato Nitta Department of Bioresource Science Graduate School of Biosphere Science Hiroshima University March 2017 Contents Chapter 1. Introduction ................................................................................................................... 1 Chapter 2. Materials and Methods .................................................................................................. 3 Chapter 3. Monogeneans from Cyprinids in Japan ......................................................................... 6 3.1 Monogeneans of the Topmouth Gudgeons Pseudorasbora spp. ........................................... 6 3.1.1 Introduction ................................................................................................................... 6 3.1.2 Results ........................................................................................................................... 6 3.1.2.1 Dactylogyrus squameus Gussev, 1955 ...................................................................... 6 3.1.2.2 Bivaginogyrus obscurus (Gussev, 1955) ................................................................... 8 3.1.2.3 Ancyrocephalus pseudorasborae Achmerow, 1952 ................................................ 11 3.1.3 Discussion ................................................................................................................... 13 3.2 Monogenean of the Kazetoge Bitterling Rhodeus atremius atremius ................................ -
Proceedingsofbio31biol.Pdf
-7 PROCEEDINGS (>K THE Biological Society of Washington /' VOLUME 31 1918 WASHINGTON PRINTED FOR THE SOCIETY K99¥ COMMITTEE ON PUBLICATIONS CHAS. W. RICHMOND, Chairman W. L. McATEE NED DEARBORN J. H. RILEY Press of H. L. & J. B. McQueen, Inc. Washington, D. C. OFFICERS AM) COUNCIL OF THE BIOLOGICAL SOCIETY OF WASHINGTON For 1918 (ELECTED DECEMBER 15, 1917) OFFICERS President J. N. ROSE Vice-Presidents A. D. HOPKINS VERNON BAILEY HUGH M. SMITH NED HOLLISTER Recording Secretary MARCUS W. LYON, Jr. Corresponding Secretary W. L. McATEE Treasurer NED DEARBORN COUNCIL PAUL BARTSCH* FRANK H. KNOWLTON* FREDERICK V. COVILLE* F. A. LUCAS* WILLIAM H. DALL* C. HART MERRIAM* B. W. EVERMANN* E. W. NELSON* J. W. GIDLEY T. S. PALMER* E. A. GOLDMAN WILLIAM PALMER W. P. HAY* L. STEJNEGER* A. S. HITCHCOCK ALEXANDER WETMORE L. O. HOWARD* DAVID WHITE* STANDING COMMITTEES— 1918 Committee on Communications William Palmer, Chairman Alexander Wetmore L. O. Howard R. E. Coker A. S. Hitchcock Committee on Publications Chas. W. Richmond, Chairman W. L. McAtee Ned Dearborn J. H. Riley *Ex-Presidents of the Society. (iii) EX-PRESIDENTS OF THE BIOLOGICAL SOCIETY OF WASHINGTON *Theodore N. Gill, 1881, 1882 *Charles A. White, 1883, 1884 *G. Brown Goode, 1885, 1886 William H. Dall, 1887, 1888 Lester F. Ward, 1889, 1890 C. Hart Merriam, 1891, 1892 *C. V. Riley, 1893, 1894 *Geo. M. Sternberg, 1895, 1896 L. O. Howard, 1897, 1898 Frederick V. Coville, 1899, 1900 F. A. Lucas, 1901, 1902 B. W. Evermann, 1903, 1904 F. H. Knowlton, 1905, 1906 L. Stejneger, 1907, 1908 T. S. Palmer, 1909, 1910 David White, 1911 E. -
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OVALENTARIA (Incertae sedis) · 1 The ETYFish Project © Christopher Scharpf and Kenneth J. Lazara COMMENTS: v. 8.0 - 20 June 2021 Series OVALENTARIA (1 of 3) Families Incertae sedis in Ovalentaria; they are listed here in alphabetical order. ovum, egg; lentae, sticky or tenacious, referring to the diagnostic and characteristic adhesive eggs found in most species in this clade Family AMBASSIDAE Asiatic Glassfishes 8 genera · 45 species · Taxonomic note: Some recent authors now use Chandidae instead of Ambassidae; the available names in date order are (1) Bogodidae Bleeker 1859, (2) Ambassidae Klunzinger 1870, and (3) Chandidae Fowler 1905. Ambassis Cuvier 1828 tautonymous with Centropomus ambassis (see A. ambassis, below) Ambassis agassizii Steindachner 1867 patronym not identified but almost certainly in honor of zoologist-geologist Louis Agassiz (1807-1873) Ambassis agrammus Günther 1867 a-, without; grammus, line, referring to near-absence of lateral line (visible on foremost scale only) Ambassis ambassis (Lacepède 1802) latinization of l’ambasse (later spelled l’ambache), a manuscript name of unknown provenance coined by Commerçon that supposedly means “de deux sous” (two pennies); a sou is an old French coin of very little value and “deux sous” is a 19th-century French euphemism for a cheap or worthless thing, referring (per Valenciennes 1867) to this glassfish’s abundance at Bourbon, Reunion Island, Mascarenes (type locality) Ambassis buruensis Bleeker 1856 -ensis, suffix denoting place: Buru Island, Molucca Islands, Indonesia, type locality (occurs from Thailand and Indonesia east to Philippines and New Guinea, north to southern Japan) Ambassis buton Popta 1918 named for Buton (also spelled Butung), Indonesia, type locality Ambassis elongata (Castelnau 1878) elongate, referring to its more elongate body compared to A. -
Sialic Acid Binding Lectins (SABL) from Mollusca, a Review and Insilico
Journal of Entomology and Zoology Studies 2017; 5(6): 1563-1572 E-ISSN: 2320-7078 P-ISSN: 2349-6800 Sialic acid binding lectins (SABL) from Mollusca, JEZS 2017; 5(6): 1563-1572 © 2017 JEZS a review and insilico study of SABL from Solen Received: 01-09-2017 Accepted: 03-10-2017 grandis and Limax flavus Shyamasree Ghosh School of Biological Sciences, National Institute of Science Shyamasree Ghosh Education and Research (NISER), Bhubaneswar, Jatni, Abstract Odisha, PO 752050 India, Homi Members of Phylum Mollusca with aquatic existence are exposed to pathogens. Their innate immune Bhabha National Institute, Training School Complex, system comprises of both cellular and humoral immune responses. Many members are known to Anushakti Nagar, Mumbai, synthesise lectins that confer innate immunity. Sialic acid binding lectins (SABLs) show high specificity Maharashtra, India towards N-acetylneuraminic acid (NeuNAc), N-Glycolylneuraminic acid (Neu5Gc) and Nacetyl-9-0- acetylneuraminic acid (Neu5, 9Ac2). No study on their crystal structure of SABLs from Mollusca exists and therefore we have analysed the only complete sequences available from the genebank and performed insilico analysis to understand the 3D structures. We discuss in this article structural peculiarities in SABL from Solen grandis and Limax flavus through insilico approaches. While all the SABLs with complete sequences had a conserved C1q complement domain, which may play role in bacterial recognition, Solen grandis SABL has an additional domain with similarity to Prefoldin with a probable molecular chaperon like activity and Limax flavus has domains bearing homology to fibrinogen-related domains (Fred) superfamily with probable role in blood clotting and are unique amongst molluscan SABLs. -
Taxonomic Revisions Within Embiotocidae (Teleostei, Perciformes) Based on Molecular Phylogenetics
Zootaxa 4482 (3): 591–596 ISSN 1175-5326 (print edition) http://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2018 Magnolia Press ISSN 1175-5334 (online edition) https://doi.org/10.11646/zootaxa.4482.3.10 http://zoobank.org/urn:lsid:zoobank.org:pub:082CDE81-5237-4DED-BDB5-946C48A42775 Taxonomic revisions within Embiotocidae (Teleostei, Perciformes) based on molecular phylogenetics GARY C. LONGO1,2,4, GIACOMO BERNARDI2 & ROBERT N. LEA3 1Current address: Conservation Biology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, 2725 Montlake Blvd E, Seattle, WA 98112, USA 2Department of Ecology and Evolutionary Biology, University of California Santa Cruz, Santa Cruz, California, 95060, USA. 3California Department of Fish and Game (retired), Marine Region, 20 Lower Ragsdale Drive, Monterey, California 93940 and Cali- fornia Academy of Sciences, 55 Music Concourse Drive, Golden Gate Park, San Francisco, California 94118 4Corresponding author. Conservation Biology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, 2725 Montlake Blvd E Seattle, WA 98112 USA. E-mail: [email protected] Abstract Embiotocidae, a unique family within the Perciformes that has evolved a complex viviparous natural history, has lacked full resolution and strong support in several interspecific relationships until recently. Here we propose three taxonomic revisions within embiotocid surfperches based on recent molecular phylogenetic analyses that robustly resolve all inter- specific relationship in the Eastern Pacific species: Hypsurus caryi (Agassiz, 1853) resurrected to its original name Em- biotoca caryi Agassiz, 1853, Rhacochilus vacca (Girard, 1855) shifted into the genus Phanerodon Girard, 1854, and Hyperprosopon anale Agassiz, 1861 separated into the available genus Hypocritichthys Gill, 1862.