Testate Amoebae and Foraminifera
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A Guide to 1.000 Foraminifera from Southwestern Pacific New Caledonia
Jean-Pierre Debenay A Guide to 1,000 Foraminifera from Southwestern Pacific New Caledonia PUBLICATIONS SCIENTIFIQUES DU MUSÉUM Debenay-1 7/01/13 12:12 Page 1 A Guide to 1,000 Foraminifera from Southwestern Pacific: New Caledonia Debenay-1 7/01/13 12:12 Page 2 Debenay-1 7/01/13 12:12 Page 3 A Guide to 1,000 Foraminifera from Southwestern Pacific: New Caledonia Jean-Pierre Debenay IRD Éditions Institut de recherche pour le développement Marseille Publications Scientifiques du Muséum Muséum national d’Histoire naturelle Paris 2012 Debenay-1 11/01/13 18:14 Page 4 Photos de couverture / Cover photographs p. 1 – © J.-P. Debenay : les foraminifères : une biodiversité aux formes spectaculaires / Foraminifera: a high biodiversity with a spectacular variety of forms p. 4 – © IRD/P. Laboute : îlôt Gi en Nouvelle-Calédonie / Island Gi in New Caledonia Sauf mention particulière, les photos de cet ouvrage sont de l'auteur / Except particular mention, the photos of this book are of the author Préparation éditoriale / Copy-editing Yolande Cavallazzi Maquette intérieure et mise en page / Design and page layout Aline Lugand – Gris Souris Maquette de couverture / Cover design Michelle Saint-Léger Coordination, fabrication / Production coordination Catherine Plasse La loi du 1er juillet 1992 (code de la propriété intellectuelle, première partie) n'autorisant, aux termes des alinéas 2 et 3 de l'article L. 122-5, d'une part, que les « copies ou reproductions strictement réservées à l'usage privé du copiste et non destinées à une utilisation collective » et, d'autre part, que les analyses et les courtes citations dans un but d'exemple et d'illustration, « toute représentation ou reproduction intégrale ou partielle, faite sans le consentement de l'auteur ou de ses ayants droit ou ayants cause, est illicite » (alinéa 1er de l'article L. -
A New Preparation Method for Testate Amoebae in Minerogenic Sediments
A new preparation method for testate amoebae in minerogenic sediments X. Zheng1, J.B. Harper2, G. Hope3 and S.D. Mooney1 1 School of Biological, Earth & Environmental Sciences, University of New South Wales, Australia 2 School of Chemistry, University of New South Wales, Australia 3 Department of Archaeology and Natural History, Australian National University, Australia _______________________________________________________________________________________ SUMMARY Testate amoebae are one of a few moisture-sensitive proxies available to study Holocene palaeohydrology. Although the majority of research has been conducted on ombrotrophic peatlands in the Northern Hemisphere, the application of testate amoebae in minerogenic sediments, such as minerotrophic peatlands and saltmarshes, holds considerable promise but is often impeded by the low concentration of testate amoebae and by time- consuming counting. Here a new preparation protocol to concentrate testate amoebae is proposed; it removes more minerogenic particles and organic matter, but results in negligible damage to testate amoebae. Sodium pyrophosphate (Na4P2O7) is introduced to remove fine particles through deflocculation that, in contrast to the commonly used chemical digestion/deprotonation via an alkaline treatment, is more physically benign to testate amoebae. Furthermore, acetone is introduced as an organic co-solvent to increase the solubility of organic matter in the alkaline treatment. We test the new protocol against standard, water-based methods and find that the addition of sodium pyrophosphate yields the highest concentration and increases the total number of testate amoebae recovered. Statistical analyses (multivariate ANOVA and ordination) suggest that the new method retains the assemblage integrity. We conclude by recommending a protocol combining sodium pyrophosphate, acetone and a mild alkaline treatment, as this combination yields the best slide clarity, reduced counting time and results in negligible damage to testate amoebae. -
Molecular Phylogeny of Euglyphid Testate Amoebae (Cercozoa: Euglyphida)
View metadata, citation and similar papers at core.ac.uk brought to you by CORE ARTICLE IN PRESS provided by Infoscience - École polytechnique fédérale de Lausanne Molecular Phylogenetics and Evolution xxx (2010) xxx–xxx Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Molecular phylogeny of euglyphid testate amoebae (Cercozoa: Euglyphida) suggests transitions between marine supralittoral and freshwater/terrestrial environments are infrequent Thierry J. Heger a,b,c,d,e,*, Edward A.D. Mitchell a,b,c, Milcho Todorov f, Vassil Golemansky f, Enrique Lara c, Brian S. Leander e, Jan Pawlowski d a Ecosystem Boundaries Research Unit, Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), CH-1015 Lausanne, Switzerland b Environmental Engineering Institute, École Polytechnique Fédérale de Lausanne (EPFL), Station 2, CH-1015 Lausanne, Switzerland c Institute of Biology, University of Neuchâtel, CH-2009 Neuchâtel, Switzerland d Department of Zoology and Animal Biology, University of Geneva, Sciences III, CH-1211 Geneva 4, Switzerland e Departments of Zoology and Botany, University of British Columbia, Vancouver, BC, Canada V6T 1Z4 f Institute of Zoology, Bulgarian Academy of Sciences, 1000 Sofia, Bulgaria article info abstract Article history: Marine and freshwater ecosystems are fundamentally different regarding many biotic and abiotic factors. Received 24 June 2009 The physiological adaptations required for an organism to pass the salinity barrier are considerable. Many Revised 22 November 2009 eukaryotic lineages are restricted to either freshwater or marine environments. Molecular phylogenetic Accepted 25 November 2009 analyses generally demonstrate that freshwater species and marine species segregate into different Available online xxxx sub-clades, indicating that transitions between these two environments occur only rarely in the course of evolution. -
Amoebozoa) Is Congruent with Test Size and Metabolism Type
Phylogenetic divergence within the Arcellinida (Amoebozoa) is congruent with test size and metabolism type. Macumber, A., Blandenier, Q., Todorov, M., Duckert, C., Lara, E., Lahr, D., Mitchell, E., & Roe, H. (2019). Phylogenetic divergence within the Arcellinida (Amoebozoa) is congruent with test size and metabolism type. European Journal of Protistology. https://doi.org/10.1016/j.ejop.2019.125645 Published in: European Journal of Protistology Document Version: Peer reviewed version Queen's University Belfast - Research Portal: Link to publication record in Queen's University Belfast Research Portal Publisher rights Copyright 2019 Elsevier. This manuscript is distributed under a Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/), which permits distribution and reproduction for non-commercial purposes, provided the author and source are cited. General rights Copyright for the publications made accessible via the Queen's University Belfast Research Portal is retained by the author(s) and / or other copyright owners and it is a condition of accessing these publications that users recognise and abide by the legal requirements associated with these rights. Take down policy The Research Portal is Queen's institutional repository that provides access to Queen's research output. Every effort has been made to ensure that content in the Research Portal does not infringe any person's rights, or applicable UK laws. If you discover content in the Research Portal that you believe breaches copyright or violates any law, please contact [email protected]. Download date:03. mar. 2021 1 Title: 2 3 Phylogenetic divergence within the Arcellinida (Amoebozoa) is congruent with test size 4 and metabolism type 5 6 Author Names: 7 8 Andrew L. -
Use of Arcellinida (Testate Lobose Amoebae) Arsenic Tolerance Limits As a Novel Tool for Biomonitoring Arsenic Contamination in Lakes T ⁎ Nawaf A
Ecological Indicators 113 (2020) 106177 Contents lists available at ScienceDirect Ecological Indicators journal homepage: www.elsevier.com/locate/ecolind Use of Arcellinida (testate lobose amoebae) arsenic tolerance limits as a novel tool for biomonitoring arsenic contamination in lakes T ⁎ Nawaf A. Nassera, , R. Timothy Pattersona, Helen M. Roeb, Jennifer M. Gallowayc, Hendrik Falckd, Hamed Saneie a Department of Earth Sciences, Carleton University, Ottawa, Ontario K1S 5B6, Canada b School of Natural and Built Environment, Queen's University Belfast, Belfast, BT7 1NN, UK c Geological Survey of Canada/Commission géologique du Canada, Calgary, Alberta T2L 2A7, Canada d Northwest Territories Geological Survey, Yellowknife, Northwest Territories X1A 2L9, Canada e Department of Geoscience, Aarhus University, Aarhus 8000, Denmark ARTICLE INFO ABSTRACT Keywords: Arsenic (As) contamination from legacy gold mining in subarctic Canada poses an ongoing threat to lake biota. Arsenic contamination With climatic warming expected to increase As bioavailability in lake waters, developing tools for monitoring As Subarctic variability becomes essential. Arcellinida (testate lobose amoebae) is an established group of lacustrine bioin- Gold mining dicators that are sensitive to changes in environmental conditions and lacustrine ecological health. In this study, Lake sediments As-tolerance of Arcellinida (testate lobose amoebae) in lake sediments (n = 93) in subarctic Northwest Arcellinida Territories, Canada was investigated. Arcellinida assemblage dynamics were compared with the intra-lake As As tolerance limits distribution to delineate the geospatial extent of legacy As contamination related to the former Giant Mine (Yellowknife). Cluster analysis revealed five Arcellinida assemblages that correlate strongly with ten variables (variance explained = 40.4%), with As (9.4%) and S1-carbon (labile organic matter; 8.9%) being the most important (p-value = 0.001, n = 84). -
Testate Amoebae As a Proxy for Reconstructing Holocene Water Table Dynamics in Southern Patagonian Peat Bogs
JOURNAL OF QUATERNARY SCIENCE (2014) 29(5) 463–474 ISSN 0267-8179. DOI: 10.1002/jqs.2719 Testate amoebae as a proxy for reconstructing Holocene water table dynamics in southern Patagonian peat bogs SIMON VAN BELLEN,1* DMITRI MAUQUOY,1 RICHARD J. PAYNE,2 THOMAS P. ROLAND,3 TIM J. DALEY,4 PAUL D. M. HUGHES,5 NEIL J. LOADER,6 F. ALAYNE STREET-PERROTT,6 EMMA M. RICE4 and VERO´ NICA A. PANCOTTO7 1University of Aberdeen, Geography & Environment, St Mary’s Building, Room G19 Elphinstone Road, Aberdeen AB24 3UF, UK 2University of Stirling, Biological and Environmental Sciences, UK 3University of Southampton, Geography & Environment, UK 4University of Plymouth, School of Geography, UK 5University of Southampton, School of Geography, UK 6Swansea University, Department of Geography, UK 7CADIC-CONICET, Ushuaia, Argentina Received 17 October 2013; Revised 14 March 2014; Accepted 1 May 2014 ABSTRACT: Testate amoebae are abundant and diverse in Sphagnum peat bogs and have been used extensively as indicators of past water table depths. Although these unicellular protists are widely dispersed with globally similar hydrological preferences, regional variations in communities demand region-specific transfer functions. Here we present the first transfer function for southern Patagonian bogs, based on 154 surface samples obtained from transects in five bogs sampled in 2012 and 2013. Significant variance was explained by pH, electrical conductivity and, in particular, water table depth. Transfer functions for water table were constructed using weighted averaging and evaluated by cross-validation and independent test sets. The optimal transfer function has predictive ability, but relatively high prediction errors given the wide range in sampled water tables. -
Checklist, Assemblage Composition, and Biogeographic Assessment of Recent Benthic Foraminifera (Protista, Rhizaria) from São Vincente, Cape Verdes
Zootaxa 4731 (2): 151–192 ISSN 1175-5326 (print edition) https://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2020 Magnolia Press ISSN 1175-5334 (online edition) https://doi.org/10.11646/zootaxa.4731.2.1 http://zoobank.org/urn:lsid:zoobank.org:pub:560FF002-DB8B-405A-8767-09628AEDBF04 Checklist, assemblage composition, and biogeographic assessment of Recent benthic foraminifera (Protista, Rhizaria) from São Vincente, Cape Verdes JOACHIM SCHÖNFELD1,3 & JULIA LÜBBERS2 1GEOMAR Helmholtz-Centre for Ocean Research Kiel, Wischhofstrasse 1-3, 24148 Kiel, Germany 2Institute of Geosciences, Christian-Albrechts-University, Ludewig-Meyn-Straße 14, 24118 Kiel, Germany 3Corresponding author. E-mail: [email protected] Abstract We describe for the first time subtropical intertidal foraminiferal assemblages from beach sands on São Vincente, Cape Verdes. Sixty-five benthic foraminiferal species were recognised, representing 47 genera, 31 families, and 8 superfamilies. Endemic species were not recognised. The new checklist largely extends an earlier record of nine benthic foraminiferal species from fossil carbonate sands on the island. Bolivina striatula, Rosalina vilardeboana and Millettiana milletti dominated the living (rose Bengal stained) fauna, while Elphidium crispum, Amphistegina gibbosa, Quinqueloculina seminulum, Ammonia tepida, Triloculina rotunda and Glabratella patelliformis dominated the dead assemblages. The living fauna lacks species typical for coarse-grained substrates. Instead, there were species that had a planktonic stage in their life cycle. The living fauna therefore received a substantial contribution of floating species and propagules that may have endured a long transport by surface ocean currents. The dead assemblages largely differed from the living fauna and contained redeposited tests deriving from a rhodolith-mollusc carbonate facies at <20 m water depth. -
(Protozoa: Rhizopoda) of the Genera Arcella and Difflugia from India
Journal on New Biological Reports ISSN 2319 – 1104 (Online) JNBR 5(1) 7 – 9 (2016) Published by www.researchtrend.net New records of testate amoebae (Protozoa: Rhizopoda) of the genera Arcella and Difflugia from India Bindu. L* and Jasmine Purushothaman** *Marine Biology Regional Centre, Zoological Survey of India, Chennai-600 028 **Zoological Survey of India, M-Block, New Alipore, Kolkata-700 053 *Corresponding author: [email protected] | Received: 06 January 2016 | Accepted: 29 February 2016 | ABSTRACT Two species of testate amoebae viz., Arcella excavata Cunningham, 1919 and Difflugia geosphaira Ogden, 1991are reported from Marakkanam and Coleron estuaries in Tamil Nadu and D. geosphaira also from Himachal Pradesh which are new records from India. Key Words: Testate amoebae, Arcella excavata, Difflugia geosphaira, Marakkanam estuary, Coleron estuary, Himachal Pradesh. INTRODUCTION Testate amoebae are a group of free-living already been reported from various states of India protozoans with a predominately anemochorous (Nair & Mukherjee, 1968; Mahajan, 1971; Das et way of dispersion. Most testacean species are al., 1993, 1995, 2000a, 2000b, 2003; Mishra et al., cosmopolitan. Arcella and Difflugia are the genera 1997; Bindu, 2013; Bindu et al., 2013; Bindu et al., of testate amoebae of the class Lobosea and the 2014) and Arcella excavata and Difflugia order Arcellinida. geosphaira are new records to India. These have Arcella is a genus of testate amoebae and been recorded from estuarine habitats of Tamil one of the largest and most common testacean Nadu and D. geosphaira is also recorded from genera. This genus was erected by Ehrenberg moss habitat of Himachal Pradesh. (1832) and the type species is Arcella vulgaris. -
Benthic Foraminiferal Living Depths, Stable Isotopes, and Taxonomy Offshore South Georgia, Southern Ocean: Implications for Calcification Depths
J. Micropalaeontology, 37, 25–71, 2018 https://doi.org/10.5194/jm-37-25-2018 © Author(s) 2018. This work is distributed under the Creative Commons Attribution 4.0 License. “Live” (stained) benthic foraminiferal living depths, stable isotopes, and taxonomy offshore South Georgia, Southern Ocean: implications for calcification depths Rowan Dejardin1, Sev Kender2,3, Claire S. Allen4, Melanie J. Leng1,5, George E. A. Swann1, and Victoria L. Peck4 1Centre for Environmental Geochemistry, School of Geography, University of Nottingham, University Park, Nottingham, NG7 2RD, UK 2Camborne School of Mines, University of Exeter, Penryn, Cornwall TR10 9FE, UK 3British Geological Survey, Keyworth, Nottingham NG12 5GG, UK 4British Antarctic Survey, High Cross, Madingley Road, Cambridge, CB3 0ET, UK 5NERC Isotope Geosciences Facilities, British Geological Survey, Keyworth, Nottingham, NG12 5GG, UK Correspondence: Rowan Dejardin ([email protected]) Published: 5 January 2018 Abstract. It is widely held that benthic foraminifera exhibit species-specific calcification depth preferences, with their tests recording sediment pore water chemistry at that depth (i.e. stable isotope and trace metal compositions). This assumed depth-habitat-specific pore water chemistry relationship has been used to re- construct various palaeoenvironmental parameters, such as bottom water oxygenation. However, many deep- water foraminiferal studies show wide intra-species variation in sediment living depth but relatively narrow intra-species variation in stable isotope composition. To investigate this depth-habitat–stable-isotope relation- ship on the shelf, we analysed depth distribution and stable isotopes of “living” (Rose Bengal stained) benthic foraminifera from two box cores collected on the South Georgia shelf (ranging from 250 to 300 m water depth). -
Redalyc.Testate Amoebae (Amebozoa: Arcellinida) in Tropical
Revista de Biología Tropical ISSN: 0034-7744 [email protected] Universidad de Costa Rica Costa Rica Sigala, Itzel; Lozano-García, Socorro; Escobar, Jaime; Pérez, Liseth; Gallegos-Neyra, Elvia Testate Amoebae (Amebozoa: Arcellinida) in Tropical Lakes of Central Mexico Revista de Biología Tropical, vol. 64, núm. 1, marzo, 2016, pp. 393-413 Universidad de Costa Rica San Pedro de Montes de Oca, Costa Rica Available in: http://www.redalyc.org/articulo.oa?id=44943437032 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative Testate Amoebae (Amebozoa: Arcellinida) in Tropical Lakes of Central Mexico Itzel Sigala*1, Socorro Lozano-García2, Jaime Escobar3,4, Liseth Pérez2 & Elvia Gallegos-Neyra5 1. Posgrado de Ciencias Biológicas, Instituto de Geología, Universidad Nacional Autónoma de México, Ciudad Universitaria, 04510, Distrito Federal, México; [email protected] 2. Instituto de Geología, Universidad Nacional Autónoma de México, Ciudad Universitaria, 04510, Distrito Federal, México; [email protected], [email protected] 3. Departamento de Ingeniería Civil y Ambiental, Universidad del Norte, Km 5 Vía Puerto Colombia, Barranquilla, Colombia; [email protected] 4. Center for Tropical Paleoecology and Archaeology, Smithsonian Tropical Research Institute, Balboa, Ancon, 0843- 033092, Panamá City, Panamá. 5. Laboratorio de Investigación de Patógenos Emergentes, Unidad de Investigación Interdisciplinaria para las Ciencias de la Salud y Educación, Facultad de Estudios Superiores Iztacala, Universidad Nacional Autónoma de México, Los Reyes Iztacala, 54090, Estado de México, México; [email protected] * Correspondence Received 02-II-2015. -
Population Dynamics and Food Preferences of the Testate Amoeba Nebela Tincta Major-Bohemica-Collaris Complex (Protozoa) in a Sphagnum Peatland
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by RERO DOC Digital Library Published in Acta protozoologica 42, issue 2, 99-104, 2003 1 which should be used for any reference to this work Population Dynamics and Food Preferences of the Testate Amoeba Nebela tincta major-bohemica-collaris Complex (Protozoa) in a Sphagnum Peatland Daniel Gilbert1, Edward A. D. Mitchell2, Christian Amblard3, Gilles Bourdier3 and André-Jean Francez4 1Laboratoire de Biologie et Écophysiologie, USC INRA, Université de Franche-Comté, Besançon, France; 2Department of Biological Sciences, University of Alaska Anchorage, Anchorage, U.S.A.; 3Laboratoire de Biologie Comparée des Protistes, UMR CNRS, Université de Clermont-Ferrand, Aubière Cedex, France; 4Equipe Interactions Biologiques et Transferts de Matière, UMR CNRS Ecobio, Université de Rennes I, Rennes Cedex, France Summary. Population dynamics and food preferences of the testate amoeba species complex Nebela tincta major-bohemica-collaris (“Nebela collaris sensu lato”) were described from a Sphagnum peatland over one growing season. The average abundance of Nebela collaris sensu lato was 29582 ind. l-1 active, and 2263 ind. l-1 encysted forms. On average, 17.4% of Nebela collaris sensu lato specimens were observed associated with prey, 71% of which could not be identified because of their poor preservation state. Among the identified prey, those most frequently ingested were micro-algae (45% of the total predator-prey associations, especially diatoms: 33%), and spores and mycelia of fungi (36%). Large ciliates, rotifers and small testate amoebae were also ingested, but mainly in summer. The seasonal variations in the proportions of prey categories in the ecosystem and the percentage of identifiable prey lead us to hypothesise that (1) Nebela collaris sensu lato ingest mainly immobile, senescent or dead organisms, and (2) that the more mobile micro-organisms such as ciliates and micro- Metazoa become more accessible, in relatively dry conditions, when the water film is thin. -
Biogeography and Ecological Distribution of Shallow-Water Benthic Foraminifera from the Auckland and Campbell Islands, Subantarctic Southwest Pacific
Journal of Micropalaeontology, 26: 127–143. 0262-821X/07 $15.00 2007 The Micropalaeontological Society Biogeography and ecological distribution of shallow-water benthic foraminifera from the Auckland and Campbell Islands, subantarctic southwest Pacific BRUCE W. HAYWARD, HUGH R. GRENFELL, ASHWAQ T. SABAA & RHIANNON DAYMOND-KING Geomarine Research, 49 Swainston Rd, St Johns, Auckland, New Zealand (e-mail: [email protected]) ABSTRACT – One hundred and forty-eight species of benthic foraminifera are recorded from depths shallower than 80 m around the subantarctic Auckland (130 spp.) and Campbell (71 spp.) Islands, southwest Pacific. Comparisons with other circum-polar, subantarctic island groups suggest that they all have relatively low diversity, shallow-water benthic, foraminiferal faunas, with their sheltered harbours dominated by species of Elphidium, Notorotalia, Cassidulina, Haynesina and Nonionella-Nonionellina. More exposed environments are dominated by a small number of species of Cibicides, Miliolinella, Rosalina, Quinqueloculina and Glabratellidae. The extremely low species richness (three species) in high-tidal grass-dominated salt marsh on Campbell Island is similar to that reported from Tierra del Fuego at a similar latitude. The faunas of Auckland and Campbell Islands have their strongest affinities (70–75% species in common) with New Zealand’s three main islands, 460–700 km away. Ten percent of their fauna has not been recorded from mainland New Zealand, reflecting one endemic species and a small element of apparently subantarctic and bipolar-restricted species. Since there have been no shallow-water (<500 m) links to other lands since these two Miocene volcanic islands were formed, it is concluded that most benthic foraminiferal species have arrived in suspension in eddies of surface water, many since the peak of the Last Glacial.