Possible Metabolic Basis for the Different Immunodeficient States
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Nucleoside Phosphate-Conjugates Come of Age: Catalytic Transformation, Polymerase Recognition and Antiviral Properties.# Elisabetta Groaz* and Piet Herdewijn
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Lirias Send Orders for Reprints to [email protected] Current Medicinal Chemistry, Year, Volume 1 Nucleoside Phosphate-Conjugates Come of Age: Catalytic Transformation, Polymerase Recognition and Antiviral Properties.# Elisabetta Groaz* and Piet Herdewijn Medicinal Chemistry, Rega Institute for Medical Research, KU Leuven, Minderbroedersstraat 10, 3000 Leuven, Belgium Abstract: Over the past few decades, different types of nucleoside phosphate-conjugates have been under extensive investigation due to their favorable molecular lability with interesting catalytic hydrolysis mechanisms, recognition as polymerase substrates, and especially for their development as antiviral/anticancer protide therapeutics. The antiviral conjugates such as nucleoside phosphoesters and phosphoramidates that were discovered and developed in the initial years have been well reviewed by the pioneers in the field. In the present review, we will discuss the basic chemical and biological principles behind consideration of some representative structural classes. We will also summarize the chemical and biological properties of some of the more recent analogues that were synthesized and evaluated in our laboratory and by others. This includes new principles for their application as direct substrates of polymerases, nucleobase-dependent catalytic and antiviral activity, and a plausible ‘prodrug of a prodrug’ strategy for tissue/organ-specific targeted drug delivery. Keywords: Prodrug – Delivery – Stability – Polymerase - Phosphoramidates INTRODUCTION profile of these molecules through the “tuning” of the nature of the existing ligands and the pursuit of new protecting The ability of unnatural nucleoside-based therapeutics to moieties relying on chemical rather than enzymatic induce inhibition of uncontrolled cell proliferation or viral dependant activation mechanisms. -
Depression of Thymidylate Synthetase Activity in Response to Cytosine Arabinoside1
[CANCER RESEARCH 32, 1160-1169, June 1972] Depression of Thymidylate Synthetase Activity in Response To Cytosine Arabinoside1 DeWayne Roberts and Ellen V. Loehr St. Jude Children's Research Hospital, Memphis, Tennessee 38101 ¡D.R., E. V. L.J and Department of Pharmacology, University of Tennessee Medical Units, Memphis, Tennessee 38101 [D. R.J SUMMARY Cytosine arabinoside induces remission of acute granulocytic leukemia (11). After the administration of Depression of thymidylate synthetase activity by cytosine cytosine arabinoside to patients, changes in the enzyme arabinoside in CCRF-CEM cells was correlated with a blocking activity pattern of leukemic leukocytes occur (32). After drug of precursor incorporation into RNA and with cell lysis. With administration, a decrease in thymidylate synthetase activity is increasing concentrations of cytosine arabinoside in the observed as early as 1 hr and persists for 24 hr in some culture media, a proportional decrease of uridine patients. A concentration-dependent decrease in thymidylate incorporation into RNA and decrease in thymidylate synthetase activity also follows the addition of cytosine synthetase activity occurred and was accompanied by lysis of arabinoside to CCRF-CEM cultures (33). the cells. These effects continued to develop with drug Methotrexate elevates thymidylate synthetase activity in concentrations in excess of that required to block thymidine leukocytes from patients with acute leukemia (32), in rat liver incorporation into DNA. The addition of deoxycytidine at and transplantable tumors (27), and in cells of LI210 or concentrations that failed to reverse inhibition by cytosine CCRF-CEM cultures (32, 33). The simultaneous addition of arabinoside of thymidine incorporation into DNA reversed the cytosine arabinoside and methotrexate to CCRF-CEM cultures drug effects on uridine incorporation, thymidylate synthetase modulated the effect of each drug on thymidylate synthetase activity, and cell lysis. -
Deoxyguanosine Cytotoxicity by a Novel Inhibitor of Furine Nucleoside Phosphorylase, 8-Amino-9-Benzylguanine1
[CANCER RESEARCH 46, 519-523, February 1986] Potentiation of 2'-Deoxyguanosine Cytotoxicity by a Novel Inhibitor of Furine Nucleoside Phosphorylase, 8-Amino-9-benzylguanine1 Donna S. Shewach,2 Ji-Wang Chern, Katherine E. Pillóte,Leroy B. Townsend, and Peter E. Daddona3 Departments of Internal Medicine [D.S.S., P.E.D.], Biological Chemistry [P.E.D.], and Medicinal Chemistry [J-W.C., K.E.P., L.B.T.], University ol Michigan, Ann Arbor, Michigan 48109 ABSTRACT to the ADA-deficient disease state (2). PNP is an essential enzyme of the purine salvage pathway, We have synthesized and evaluated a series of 9-substituted catalyzing the phosphorolysis of guanosine, inosine, and their analogues of 8-aminoguanine, a known inhibitor of human purine 2'-deoxyribonucleoside derivatives to the respective purine nucleoside phosphorylase (PNP) activity. The ability of these bases. To date, several inhibitors of PNP have been identified, agents to inhibit PNP has been investigated. All compounds were and most of these compounds resemble purine bases or nucleo found to act as competitive (with inosine) inhibitors of PNP, with sides. The most potent inhibitors exhibit apparent K¡values in K¡values ranging from 0.2 to 290 /¿M.Themost potent of these the range of 10~6to 10~7 M (9-12). Using partially purified human analogues, 8-amino-9-benzylguanine, exhibited a K, value that erythrocyte PNP, the diphosphate derivative of acyclovir dis was 4-fold lower than that determined for the parent base, 8- played K¡values of 5.1 x 10~7 to 8.7 x 10~9 M, depending on aminoguanine. -
2'-Deoxyguanosine Toxicity for B and Mature T Lymphoid Cell Lines Is Mediated by Guanine Ribonucleotide Accumulation
2'-deoxyguanosine toxicity for B and mature T lymphoid cell lines is mediated by guanine ribonucleotide accumulation. Y Sidi, B S Mitchell J Clin Invest. 1984;74(5):1640-1648. https://doi.org/10.1172/JCI111580. Research Article Inherited deficiency of the enzyme purine nucleoside phosphorylase (PNP) results in selective and severe T lymphocyte depletion which is mediated by its substrate, 2'-deoxyguanosine. This observation provides a rationale for the use of PNP inhibitors as selective T cell immunosuppressive agents. We have studied the relative effects of the PNP inhibitor 8- aminoguanosine on the metabolism and growth of lymphoid cell lines of T and B cell origin. We have found that 2'- deoxyguanosine toxicity for T lymphoblasts is markedly potentiated by 8-aminoguanosine and is mediated by the accumulation of deoxyguanosine triphosphate. In contrast, the growth of T4+ mature T cell lines and B lymphoblast cell lines is inhibited by somewhat higher concentrations of 2'-deoxyguanosine (ID50 20 and 18 microM, respectively) in the presence of 8-aminoguanosine without an increase in deoxyguanosine triphosphate levels. Cytotoxicity correlates instead with a three- to fivefold increase in guanosine triphosphate (GTP) levels after 24 h. Accumulation of GTP and growth inhibition also result from exposure to guanosine, but not to guanine at equimolar concentrations. B lymphoblasts which are deficient in the purine salvage enzyme hypoxanthine guanine phosphoribosyltransferase are completely resistant to 2'-deoxyguanosine or guanosine concentrations up to 800 microM and do not demonstrate an increase in GTP levels. Growth inhibition and GTP accumulation are prevented by hypoxanthine or adenine, but not by 2'-deoxycytidine. -
Hyperhomocysteinemia: Focus on Endothelial Damage As a Cause of Erectile Dysfunction
International Journal of Molecular Sciences Review Hyperhomocysteinemia: Focus on Endothelial Damage as a Cause of Erectile Dysfunction Gianmaria Salvio , Alessandro Ciarloni, Melissa Cutini and Giancarlo Balercia * Division of Endocrinology, Department of Clinical and Molecular Sciences, Polytechnic University of Marche, via Conca 71, Umberto I Hospital, 60126 Ancona, Italy; [email protected] (G.S.); [email protected] (A.C.); [email protected] (M.C.) * Correspondence: [email protected] Abstract: Erectile Dysfunction (ED) is defined as the inability to maintain and/or achieve a satis- factory erection. This condition can be influenced by the presence of atherosclerosis, a systemic pathology of the vessels that also affects the cavernous arteries and which can cause an alteration of blood flow at penile level. Among the cardiovascular risk factors affecting the genesis of atherosclero- sis, hyperhomocysteinemia (HHcys) plays a central role, which is associated with oxidative stress and endothelial dysfunction. This review focuses on the biological processes that lead to homocysteine- induced endothelial damage and discusses the consequences of HHcys on male sexual function Keywords: Erectile Dysfunction; hyperhomocysteinemia; endothelial dysfunction 1. Introduction Erectile Dysfunction (ED) is defined as the persistent inability to obtain or maintain penile erection sufficient for a satisfactory sexual performance [1] and represents a common condition in middle-aged men, with a prevalence that increases exponentially with age. Citation: Salvio, G.; Ciarloni, A.; According to data from the Massachusetts Male Aging Study (MMAS), 52% of men between Cutini, M.; Balercia, G. 40 and 70 years old report some form of ED with a percentage that increases proportionally Hyperhomocysteinemia: Focus on with aging and reaches 70% at 70 years of age [2]. -
Expanding the Genetic Code Lei Wang and Peter G
Reviews P. G. Schultz and L. Wang Protein Science Expanding the Genetic Code Lei Wang and Peter G. Schultz* Keywords: amino acids · genetic code · protein chemistry Angewandte Chemie 34 2005 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim DOI: 10.1002/anie.200460627 Angew. Chem. Int. Ed. 2005, 44,34–66 Angewandte Protein Science Chemie Although chemists can synthesize virtually any small organic molecule, our From the Contents ability to rationally manipulate the structures of proteins is quite limited, despite their involvement in virtually every life process. For most proteins, 1. Introduction 35 modifications are largely restricted to substitutions among the common 20 2. Chemical Approaches 35 amino acids. Herein we describe recent advances that make it possible to add new building blocks to the genetic codes of both prokaryotic and 3. In Vitro Biosynthetic eukaryotic organisms. Over 30 novel amino acids have been genetically Approaches to Protein encoded in response to unique triplet and quadruplet codons including Mutagenesis 39 fluorescent, photoreactive, and redox-active amino acids, glycosylated 4. In Vivo Protein amino acids, and amino acids with keto, azido, acetylenic, and heavy-atom- Mutagenesis 43 containing side chains. By removing the limitations imposed by the existing 20 amino acid code, it should be possible to generate proteins and perhaps 5. An Expanded Code 46 entire organisms with new or enhanced properties. 6. Outlook 61 1. Introduction The genetic codes of all known organisms specify the same functional roles to amino acid residues in proteins. Selectivity 20 amino acid building blocks. These building blocks contain a depends on the number and reactivity (dependent on both limited number of functional groups including carboxylic steric and electronic factors) of a particular amino acid side acids and amides, a thiol and thiol ether, alcohols, basic chain. -
Questions with Answers- Nucleotides & Nucleic Acids A. the Components
Questions with Answers- Nucleotides & Nucleic Acids A. The components and structures of common nucleotides are compared. (Questions 1-5) 1._____ Which structural feature is shared by both uracil and thymine? a) Both contain two keto groups. b) Both contain one methyl group. c) Both contain a five-membered ring. d) Both contain three nitrogen atoms. 2._____ Which component is found in both adenosine and deoxycytidine? a) Both contain a pyranose. b) Both contain a 1,1’-N-glycosidic bond. c) Both contain a pyrimidine. d) Both contain a 3’-OH group. 3._____ Which property is shared by both GDP and AMP? a) Both contain the same charge at neutral pH. b) Both contain the same number of phosphate groups. c) Both contain the same purine. d) Both contain the same furanose. 4._____ Which characteristic is shared by purines and pyrimidines? a) Both contain two heterocyclic rings with aromatic character. b) Both can form multiple non-covalent hydrogen bonds. c) Both exist in planar configurations with a hemiacetal linkage. d) Both exist as neutral zwitterions under cellular conditions. 5._____ Which property is found in nucleosides and nucleotides? a) Both contain a nitrogenous base, a pentose, and at least one phosphate group. b) Both contain a covalent phosphodister bond that is broken in strong acid. c) Both contain an anomeric carbon atom that is part of a β-N-glycosidic bond. d) Both contain an aldose with hydroxyl groups that can tautomerize. ___________________________________________________________________________ B. The structures of nucleotides and their components are studied. (Questions 6-10) 6._____ Which characteristic is shared by both adenine and cytosine? a) Both contain one methyl group. -
Central Nervous System Dysfunction and Erythrocyte Guanosine Triphosphate Depletion in Purine Nucleoside Phosphorylase Deficiency
Arch Dis Child: first published as 10.1136/adc.62.4.385 on 1 April 1987. Downloaded from Archives of Disease in Childhood, 1987, 62, 385-391 Central nervous system dysfunction and erythrocyte guanosine triphosphate depletion in purine nucleoside phosphorylase deficiency H A SIMMONDS, L D FAIRBANKS, G S MORRIS, G MORGAN, A R WATSON, P TIMMS, AND B SINGH Purine Laboratory, Guy's Hospital, London, Department of Immunology, Institute of Child Health, London, Department of Paediatrics, City Hospital, Nottingham, Department of Paediatrics and Chemical Pathology, National Guard King Khalid Hospital, Jeddah, Saudi Arabia SUMMARY Developmental retardation was a prominent clinical feature in six infants from three kindreds deficient in the enzyme purine nucleoside phosphorylase (PNP) and was present before development of T cell immunodeficiency. Guanosine triphosphate (GTP) depletion was noted in the erythrocytes of all surviving homozygotes and was of equivalent magnitude to that found in the Lesch-Nyhan syndrome (complete hypoxanthine-guanine phosphoribosyltransferase (HGPRT) deficiency). The similarity between the neurological complications in both disorders that the two major clinical consequences of complete PNP deficiency have differing indicates copyright. aetiologies: (1) neurological effects resulting from deficiency of the PNP enzyme products, which are the substrates for HGPRT, leading to functional deficiency of this enzyme. (2) immunodeficiency caused by accumulation of the PNP enzyme substrates, one of which, deoxyguanosine, is toxic to T cells. These studies show the need to consider PNP deficiency (suggested by the finding of hypouricaemia) in patients with neurological dysfunction, as well as in T cell immunodeficiency. http://adc.bmj.com/ They suggest an important role for GTP in normal central nervous system function. -
Standard Abbreviations
Journal of CancerJCP Prevention Standard Abbreviations Journal of Cancer Prevention provides a list of standard abbreviations. Standard Abbreviations are defined as those that may be used without explanation (e.g., DNA). Abbreviations not on the Standard Abbreviations list should be spelled out at first mention in both the abstract and the text. Abbreviations should not be used in titles; however, running titles may carry abbreviations for brevity. ▌Abbreviations monophosphate ADP, dADP adenosine diphosphate, deoxyadenosine IR infrared diphosphate ITP, dITP inosine triphosphate, deoxyinosine AMP, dAMP adenosine monophosphate, deoxyadenosine triphosphate monophosphate LOH loss of heterozygosity ANOVA analysis of variance MDR multiple drug resistance AP-1 activator protein-1 MHC major histocompatibility complex ATP, dATP adenosine triphosphate, deoxyadenosine MRI magnetic resonance imaging trip hosphate mRNA messenger RNA bp base pair(s) MTS 3-(4,5-dimethylthiazol-2-yl)-5-(3- CDP, dCDP cytidine diphosphate, deoxycytidine diphosphate carboxymethoxyphenyl)-2-(4-sulfophenyl)- CMP, dCMP cytidine monophosphate, deoxycytidine mono- 2H-tetrazolium phosphate mTOR mammalian target of rapamycin CNBr cyanogen bromide MTT 3-(4,5-Dimethylthiazol-2-yl)-2,5- cDNA complementary DNA diphenyltetrazolium bromide CoA coenzyme A NAD, NADH nicotinamide adenine dinucleotide, reduced COOH a functional group consisting of a carbonyl and nicotinamide adenine dinucleotide a hydroxyl, which has the formula –C(=O)OH, NADP, NADPH nicotinamide adnine dinucleotide -
Cancer Science Standard Abbreviations List
Cancer Science Standard Abbreviations List Common abbreviations, acronyms and short names are listed below. These shortened forms can be used without definition in articles published in Cancer Science. The same form is used in the plural. 7-AAD 7-amino-actinomycin D (stain) ES cell embryonic stem cell Ab antibody EST expressed sequence tag ADP adenosine 5′-diphosphate FACS fluorescence-activated cell sorter dADP 2′-deoxyadenosine 5′-diphosphate FBS fetal bovine serum AIDS acquired immunodeficiency syndrome FCS fetal calf serum Akt protein kinase B FDA Food and Drug Administration AML acute myelogenous leukemia FISH fluorescence in situ hybridization AMP adenosine 5′-monophosphate FITC fluorescein isothiocyanate dAMP 2′-deoxyadenosine 5′-monophosphate FPLC fast protein liquid chromatography ANOVA analysis of variance FRET fluorescence resonance energy transfer ATCC American Type Culture Collection GAPDH glyceraldehyde-3-phosphate dehydrogenase ATP adenosine 5′-triphosphate GDP guanosine 5′-diphosphate dATP 2′-deoxyadenosine 5′-triphosphate dGDP 2′-deoxyguanosine 5′-diphosphate beta-Gal, β-Gal beta-galactosidase GFP green fluorescent protein bp base pair(s) GMP guanosine 5′-monophosphate BrdU 5-bromodeoxyuridine dGMP 2′-deoxyguanosine 5′-monophosphate BSA bovine serum albumin GST glutathione S-transferase CCK-8 Cell Counting Kit-8 (tradename) GTP guanosine 5′-triphosphate CDP cytidine 5′-diphosphate dGTP 2′-deoxyguanosine 5′-triphosphate cCDP 2′-deoxycytidine 5′-diphosphate HA hemagglutinin CHAPS 3-[(3-cholamidopropyl)dimethylamino]-1- -
Deoxycytidine Kinase and Cytosine Nucleoside Deaminase Activities in Synchronized Cultures of Normal Rat Kidney Cells1 Charnwingwan2andtak W
(CANCERRESEARCH38,2768-2772,September1978] 0008-5472/78/0038-0000$02.00 Deoxycytidine Kinase and Cytosine Nucleoside Deaminase Activities in Synchronized Cultures of Normal Rat Kidney Cells1 CharnWingWan2andTak W. Mak Ontario Cancer Institute and Department of Medical Biophysics, university of Toronto, 500 Sherbourne Street, Toronto, Ontario, Canada M4X 1K9 ABSTRACT increased levels of cytidmnedeaminase in HeLa cell treated with ara-C. Other studies (1, 10, 23, 24, 34, 38, 40), however, Previouswork has suggestedthat 1-fi-D-arabinofurano have shown that the levels of kinase were important in sylcytosine5'-triphosphateis the active metaboliteof 1- determining the sensitivity of cells to ara-C treatment. On @-o-arabinofuranosylcytosine.Theamountof 1-/3-o-arabi the other hand it has been suggested that the nofuranosylcytosine5'-trlphosphate formed in tissues kinase:deaminase ratio could be indicative of the response has been shownto be influencedby the relativelevels of to treatment with ara-C (16, 18). These different observa deoxycytidine kinase and cytosine deaminase. In this tions are probably due to the wide variations in the kinases studywe have measuredthe intracellularlevels of deox and deaminase activities, which are known to exist among ycytidine kinase and cytosine deaminase activities in various normal and malignant tissues or cells (4, 8, 11, 18, synchronizedcultures of normal rat kidney cells. The 33). deoxycytidinekinase activftywas found to be cell cycle Since the action of ara-C is to inhibit DNA synthesis, it is relatedwith a minorpeak of activityin early G1phaseand believed to be a cell cycle-dependent drug (20, 22, 42). a major peak of activity in middleand late S phase. The Karon and Shirakawa (20, 23) and Young and Fischer (42) cytosinedeaminase activity was also found to be cycle have also determined that the action of ara-C is specifically dependent with a peak of activity at G1phase and another in the S phase of the cell cycle. -
Cyclic Adenosine 3':5'-Monophc;Phate and Cyclic Guanosine 3':5'
1 CYCLIC ADENOSINE 3':5'-MONOPHC;PHATE AND CYCLIC GUANOSINE 3':5'- MONOPHOSPHATE METABOLISM DURING THE MITOTIC CYCLE OF THE ACELLULAR SLIME MOULD PHYSABUM POLYCEPHALUM ( SCHWEINITZ ) by James Richard Lovely B.Sc. A.R.C.S. Submitted in part fulfilment for the degree of Doctor of Philosophy of the University of London. September 1977 Department of Botany, Imperial College, London SW7 2AZ. ABSTRACT. Several methods have been assessed and the most effective used for the extraction, purification, separation and assay of cyclic AMP and cyclic GMP from the acellular slime mould Physarum polycephalum. Both cyclic nucleotides have been measured at half hourly intervals in synchronous macroplasmodia. Cyclic AMP was maximal in the last quarter of G2 while cyclic GMP showed two maxima, one occurring during S phase and the other late in G2. Enzymes synthesising and degrading these cyclic nucleotides and their sensitivity to certain inhibitors and cations have been assayed by new radiometric methods in which the tritium labelled substrate and product are separated by thin layer chromatography on cellulose. Synchronous surface plasmodia have been homogenised and sepa- rated into three fractions by differential centrifugation. Phosphodiesterase activity of each fraction has been measured using tritium labelled cyclic AMP and cyclic GMP as substrate. During the 8 hour mitotic cycle, no significant change of either enzyme in any fraction was detected. Adenylate and guanylate cyclase activity has been measured using the tritium labelled imidophosphate analogues as substrate. Adenylate cyclase activity in a low speed particulate fraction increased by about 50% in late G2. No significant changes were detected at any time in the high speed particulate or soluble fractions.